Non-Coding RNA Search

Ss1.1-Tes1-TES01D110062.5

Sequence:


               
               GGGTCTTCTGCTTCGTCTTGGAGCGTGGGCTTCCACCAGGGTCCTCCGGGAAAGTCGGCA
GTGGGAGCGGAGCTTCTGTCTTGGTTTCTAGTGTGGTGTGTGTGGAGCTGACCCCGCCTG
CGCACAGTCTTGCCAAGGGTCTGGAGAGGGTAGCCCCTCCCTGAGGAAGGGGCTCAGGAG
GCGCCGGGTGGCGGAACTTTGCGACCATGAAGGTCAAAGTCATCCCAGTGCTTGAGGACA
ACTACATGTACCTGGTCATCGAGGAACACACGCGGGAGGCCTTGGCCGTGGACGTGGCTG
TGCCCAAAAGGCTGCTGGAGATCGTGGGCCGGGAGGGGGTGTCACTGACCACCGTGCTGA
CCACCCACCACCACTGGGACCACGCTCGTGGCAACGCAGAGCTGGCAAGGCTGCTGCCTG
GGCTGGAGGTGCTGGGCGCGGATGAACGTATCTGTGCGCTGACCCGCAGGCTGGTGCATG
GCGAGGAGCTGCAGTTTGGTGCCATCCACGTGCGCTGCCTCCTGACACCTGGCCACACCT
CCGGCCACATGAGTTACTTTCTGTGGGAAGACGAGTGTCCAGACCCCCCCGCCGTGTTCT
CAAGGGATGCGCTGTCAGTGGCCGGCTGCGGCTCACGCCTGGAGAGCACAGCTCAGCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTCTTCTGCTTCGTCTTGGAGCGTGGGCTTCCACCAGGGTCCTCCGGGAAAGTCGGCA
GTGGGAGCGGAGCTTCTGTCTTGGTTTCTAGTGTGGTGTGTGTGGAGCTGACCCCGCCTG
CGCACAGTCTTGCCAAGGGTCTGGAGAGGGTAGCCCCTCCCTGAGGAAGGGGCTCAGGAG
GCGCCGGGTGGCGGAACTTTGCGACCATGAAGGTCAAAGTCATCCCAGTGCTTGAGGACA
ACTACATGTACCTGGTCATCGAGGAACACACGCGGGAGGCCTTGGCCGTGGACGTGGCTG
TGCCCAAAAGGCTGCTGGAGATCGTGGGCCGGGAGGGGGTGTCACTGACCACCGTGCTGA
CCACCCACCACCACTGGGACCACGCTCGTGGCAACGCAGAGCTGGCAAGGCTGCTGCCTG
GGCTGGAGGTGCTGGGCGCGGATGAACGTATCTGTGCGCTGACCCGCAGGCTGGTGCATG
GCGAGGAGCTGCAGTTTGGTGCCATCCACGTGCGCTGCCTCCTGACACCTGGCCACACCT
CCGGCCACATGAGTTACTTTCTGTGGGAAGACGAGTGTCCAGACCCCCCCGCCGTGTTCT
CAAGGGATGCGCTGTCAGTGGCCGGCTGCGGCTCACGCCTGGAGAGCACAGCTCAGCTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q59FX8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q59FX8_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               138-236, + strand, RNAz p=0.583057

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               138-236, + strand, RNAz p=0.583057

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032304, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032304, +

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               19-314, gnl|bosTau2|chr25 (1176636-1176353)
               

               
               19-314, gnl|Hg17|chr16 (717318-717618)
               

               
               19-314, gnl|Mm7|chr17 (23968496-23968241)
               


               
               371-492, gnl|bosTau2|chr25 (1175859-1175738)
               

               
               371-492, gnl|canFam2|chr6 (42896982-42896812)
               

               
               371-492, gnl|dasNov1|scaffold_192680 (4057-3911)
               

               
               371-492, gnl|fr1|chrUn (144220201-144220342)
               

               
               371-492, gnl|galGal2|chr14 (8080885-8080729)
               

               
               371-492, gnl|hg17|chr16 (718055-718223)
               

               
               371-492, gnl|Hg17|chr16 (718111-718232)
               

               
               371-492, gnl|loxAfr1|scaffold_53264 (15938-16100)
               

               
               371-492, gnl|mm7|chr17 (23967878-23967708)
               

               
               371-492, gnl|Mm7|chr17 (23967818-23967697)
               

               
               371-492, gnl|monDom2|scaffold_227 (335846-335651)
               

               
               371-492, gnl|rheMac2|chr20 (720875-721046)
               

               
               371-492, gnl|rn3|chr10 (15052151-15051985)
               

               
               371-492, gnl|tetNig1|chr3 (9075305-9075434)
               

               
               371-492, gnl|xenTro1|scaffold_2227 (7656-7815)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-314, gnl|bosTau2|chr25 (1176636-1176353)
               

               
               19-314, gnl|Hg17|chr16 (717318-717618)
               

               
               19-314, gnl|Mm7|chr17 (23968496-23968241)
               


               
               371-492, gnl|bosTau2|chr25 (1175859-1175738)
               

               
               371-492, gnl|canFam2|chr6 (42896982-42896812)
               

               
               371-492, gnl|dasNov1|scaffold_192680 (4057-3911)
               

               
               371-492, gnl|fr1|chrUn (144220201-144220342)
               

               
               371-492, gnl|galGal2|chr14 (8080885-8080729)
               

               
               371-492, gnl|hg17|chr16 (718055-718223)
               

               
               371-492, gnl|Hg17|chr16 (718111-718232)
               

               
               371-492, gnl|loxAfr1|scaffold_53264 (15938-16100)
               

               
               371-492, gnl|mm7|chr17 (23967878-23967708)
               

               
               371-492, gnl|Mm7|chr17 (23967818-23967697)
               

               
               371-492, gnl|monDom2|scaffold_227 (335846-335651)
               

               
               371-492, gnl|rheMac2|chr20 (720875-721046)
               

               
               371-492, gnl|rn3|chr10 (15052151-15051985)
               

               
               371-492, gnl|tetNig1|chr3 (9075305-9075434)
               

               
               371-492, gnl|xenTro1|scaffold_2227 (7656-7815)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	19-314, gnl\|bosTau2\|chr25 (1176636-1176353)
	19-314, gnl\|Hg17\|chr16 (717318-717618)
	19-314, gnl\|Mm7\|chr17 (23968496-23968241)

	371-492, gnl\|bosTau2\|chr25 (1175859-1175738)
	371-492, gnl\|canFam2\|chr6 (42896982-42896812)
	371-492, gnl\|dasNov1\|scaffold_192680 (4057-3911)
	371-492, gnl\|fr1\|chrUn (144220201-144220342)
	371-492, gnl\|galGal2\|chr14 (8080885-8080729)
	371-492, gnl\|hg17\|chr16 (718055-718223)
	371-492, gnl\|Hg17\|chr16 (718111-718232)
	371-492, gnl\|loxAfr1\|scaffold_53264 (15938-16100)
	371-492, gnl\|mm7\|chr17 (23967878-23967708)
	371-492, gnl\|Mm7\|chr17 (23967818-23967697)
	371-492, gnl\|monDom2\|scaffold_227 (335846-335651)
	371-492, gnl\|rheMac2\|chr20 (720875-721046)
	371-492, gnl\|rn3\|chr10 (15052151-15051985)
	371-492, gnl\|tetNig1\|chr3 (9075305-9075434)
	371-492, gnl\|xenTro1\|scaffold_2227 (7656-7815)