Ss1.1-Tes1-TES01E010010.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACGTGTGCAGTCCCGGAAGCGGCTCCGGGAAGCTGCCCAGCGCGCGCAGCGGGAGGAG GTGCAGCCCGGTCCGCTCAGGTCGGGTCCGGCTGGGCCATGGAACCATTACCTGAGCCCA CGTCCCGGCCTCGGCTCCGGCCTCGGCCCCGCTGTCTTCTGCTTCTTCCCCTGCTACTGT TGCTGCTGCTGCTACTGCCCGCCCCGGAGCTGGGCCCGAGGGAGGCCCGAGCAGAGGAGA CAGACTGGGTTCGACTGCCAAGCAAATGCGAAGTGTGTAAATATGTCGCCGTGGAGCTGA AGTCAGCCTTTGAGGAAACTGGCAAGACCAAGGAGGTGATTGACACAGGCTATGGCATCT TGGACCGGAAAGCCTCTGGAGTCAAATACACCAAGTCGGACTTACGGCTAATTGAAGTCA CTGAGACCATCTGCAAGCGGCTCCTGGACTATAGCCTGCACAAGGAGAGGACCGGCAGCA ACCGGTTTGCCAAGGGCATGTCAGAGACCTTTGAGACGCTGCACAACCTGGTGCACAAAG GGGTCAAGGTGGTGATGGACATCCCCTACGAGCTGTGGAACGAGACCTCTGCGGAGGTGG CCGACCTCAAGAAGCAGTGCGACGTGCTGGTAGAGGAGTTCGAGGAAGTGATCGAGGACT GGTACAGGAACCACCAGGAGGAGGACCTGACTCAGTTCCTCTGCGCCAACCACGTGCTGA AGGGCAAGGACACCAGCTGCCTGGCAGAACAGTGGTCTGGCAAGAAGGGGGACACAGCAG CCCTGGGGGGAAAGAAATCCAAGAAGAAGAGCAGCAGGGCCAAGGCATCGGGCGGTGGCA GCAAACAGAGGAAGGAGCTGGGTGGCATCGAGGGAGACCCCAGTCCTGAGGAGGATGAGG GCATCCAGAAGGCCTCCCCCCTCACACACAGCCCCCCTGATGAGCTCTGAGCCTCACCCG GCAGCTCCTGCTCACCCAGACCCCAGTCCTGGGAGCTGAAGGGTCTGGACCCCGGTTCCC GCAGACGAAGTGGCGCCGGACTTCAGGCCACTGCCCGGACTGTGCCTCCTTCTGCTGAGG AGCAACTCCCACCCTGGAAGGACTCACATCAGCTGTGCTTGGCCCCGGCCGGGCTGAGCC TTCCTCTCCCAACACAGGCTTCAGGTGGGCCCTGGCATCTCAGGGCTGCCCAGAACCCCG GCGTGAACTCTGCCAGGCAGGCGGCCAGCTGAGCCAGGGGACTGGGGCCTCCGGAGCCCT CGCCCCTCATGCCTTCCCACCTGGGAAGCAAGACTGAGGCCCCGCTCCTCTCTCTGCCTC CCCCTCCTGTGGACACGTTATGCTCTGCCCAGCCCTCCCCAGGGCTCACAGAGTAAACAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACGTGTGCAGTCCCGGAAGCGGCTCCGGGAAGCTGCCCAGCGCGCGCAGCGGGAGGAG GTGCAGCCCGGTCCGCTCAGGTCGGGTCCGGCTGGGCCATGGAACCATTACCTGAGCCCA CGTCCCGGCCTCGGCTCCGGCCTCGGCCCCGCTGTCTTCTGCTTCTTCCCCTGCTACTGT TGCTGCTGCTGCTACTGCCCGCCCCGGAGCTGGGCCCGAGGGAGGCCCGAGCAGAGGAGA CAGACTGGGTTCGACTGCCAAGCAAATGCGAAGTGTGTAAATATGTCGCCGTGGAGCTGA AGTCAGCCTTTGAGGAAACTGGCAAGACCAAGGAGGTGATTGACACAGGCTATGGCATCT TGGACCGGAAAGCCTCTGGAGTCAAATACACCAAGTCGGACTTACGGCTAATTGAAGTCA CTGAGACCATCTGCAAGCGGCTCCTGGACTATAGCCTGCACAAGGAGAGGACCGGCAGCA ACCGGTTTGCCAAGGGCATGTCAGAGACCTTTGAGACGCTGCACAACCTGGTGCACAAAG GGGTCAAGGTGGTGATGGACATCCCCTACGAGCTGTGGAACGAGACCTCTGCGGAGGTGG CCGACCTCAAGAAGCAGTGCGACGTGCTGGTAGAGGAGTTCGAGGAAGTGATCGAGGACT GGTACAGGAACCACCAGGAGGAGGACCTGACTCAGTTCCTCTGCGCCAACCACGTGCTGA AGGGCAAGGACACCAGCTGCCTGGCAGAACAGTGGTCTGGCAAGAAGGGGGACACAGCAG CCCTGGGGGGAAAGAAATCCAAGAAGAAGAGCAGCAGGGCCAAGGCATCGGGCGGTGGCA GCAAACAGAGGAAGGAGCTGGGTGGCATCGAGGGAGACCCCAGTCCTGAGGAGGATGAGG GCATCCAGAAGGCCTCCCCCCTCACACACAGCCCCCCTGATGAGCTCTGAGCCTCACCCG GCAGCTCCTGCTCACCCAGACCCCAGTCCTGGGAGCTGAAGGGTCTGGACCCCGGTTCCC GCAGACGAAGTGGCGCCGGACTTCAGGCCACTGCCCGGACTGTGCCTCCTTCTGCTGAGG AGCAACTCCCACCCTGGAAGGACTCACATCAGCTGTGCTTGGCCCCGGCCGGGCTGAGCC TTCCTCTCCCAACACAGGCTTCAGGTGGGCCCTGGCATCTCAGGGCTGCCCAGAACCCCG GCGTGAACTCTGCCAGGCAGGCGGCCAGCTGAGCCAGGGGACTGGGGCCTCCGGAGCCCT CGCCCCTCATGCCTTCCCACCTGGGAAGCAAGACTGAGGCCCCGCTCCTCTCTCTGCCTC CCCCTCCTGTGGACACGTTATGCTCTGCCCAGCCCTCCCCAGGGCTCACAGAGTAAACAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 1-142, gnl|bosTau2|chr23 (13002192-13002334) | |
| 1-142, gnl|canFam2|chr12 (14481247-14481436) | |
| 1-142, gnl|hg17|chr6 (43005130-43005314) | |
| 1-142, gnl|Hg17|chr6 (43005188-43005313) | |
| 1-142, gnl|loxAfr1|scaffold_12521 (73737-73922) | |
| 1-142, gnl|mm7|chr17 (44881409-44881225) | |
| 1-142, gnl|Mm7|chr17 (44881349-44881224) | |
| 1-142, gnl|monDom2|scaffold_0 (198706735-198706520) | |
| 1-142, gnl|oryCun1|scaffold_198310 (38697-38510) | |
| 1-142, gnl|panTro1|chr5 (43599202-43599386) | |
| 1-142, gnl|rheMac2|chr4 (42815643-42815826) | |
| 1-142, gnl|rn3|chr9 (10102875-10103060) | |
| 272-398, gnl|bosTau2|chr23 (13005555-13005681) | |
| 272-398, gnl|canFam2|chr12 (14485727-14485874) | |
| 272-398, gnl|danRer3|chr1 (6336243-6336377) | |
| 272-398, gnl|dasNov1|scaffold_3896 (6541-6393) | |
| 272-398, gnl|fr1|chrUn (291617036-291617185) | |
| 272-398, gnl|galGal2|chr14 (16220724-16220580) | |
| 272-398, gnl|hg17|chr6 (43010175-43010321) | |
| 272-398, gnl|Hg17|chr6 (43010189-43010315) | |
| 272-398, gnl|mm7|chr17 (44876686-44876543) | |
| 272-398, gnl|Mm7|chr17 (44876673-44876547) | |
| 272-398, gnl|monDom2|scaffold_0 (198701761-198701613) | |
| 272-398, gnl|panTro1|chr5 (43604364-43604510) | |
| 272-398, gnl|rheMac2|chr4 (42820962-42821108) | |
| 272-398, gnl|rn3|chr9 (10106884-10107027) | |
| 272-398, gnl|tetNig1|chrUn_random (13211605-13211744) | |
| 493-617, gnl|bosTau2|chr23 (13008826-13008950) | |
| 493-617, gnl|canFam2|chr12 (14489447-14489587) | |
| 493-617, gnl|danRer3|chr1 (6338804-6338937) | |
| 493-617, gnl|dasNov1|scaffold_95728 (7148-7281) | |
| 493-617, gnl|echTel1|scaffold_323377 (89346-89486) | |
| 493-617, gnl|fr1|chrUn (291618011-291618144) | |
| 493-617, gnl|galGal2|chr14 (16220084-16219953) | |
| 493-617, gnl|hg17|chr6 (43013426-43013566) | |
| 493-617, gnl|Hg17|chr6 (43013431-43013555) | |
| 493-617, gnl|loxAfr1|scaffold_48555 (362-502) | |
| 493-617, gnl|mm7|chr17 (44866856-44866716) | |
| 493-617, gnl|Mm7|chr17 (44866849-44866725) | |
| 493-617, gnl|monDom2|scaffold_0 (198700325-198700185) | |
| 493-617, gnl|oryCun1|scaffold_193147 (24678-24811) | |
| 493-617, gnl|panTro1|chr5 (43607616-43607756) | |
| 493-617, gnl|rheMac2|chr4 (42824440-42824580) | |
| 493-617, gnl|rn3|chr9 (10115339-10115479) | |
| 493-617, gnl|tetNig1|chrUn_random (13212259-13212392) | |
| 736-1380, gnl|bosTau2|chr23 (13009600-13010243) | |
| 736-1380, gnl|Hg17|chr6 (43014284-43014966) | |
| 736-1380, gnl|Mm7|chr17 (44865906-44865051) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-142, gnl|bosTau2|chr23 (13002192-13002334) | |
| 1-142, gnl|canFam2|chr12 (14481247-14481436) | |
| 1-142, gnl|hg17|chr6 (43005130-43005314) | |
| 1-142, gnl|Hg17|chr6 (43005188-43005313) | |
| 1-142, gnl|loxAfr1|scaffold_12521 (73737-73922) | |
| 1-142, gnl|mm7|chr17 (44881409-44881225) | |
| 1-142, gnl|Mm7|chr17 (44881349-44881224) | |
| 1-142, gnl|monDom2|scaffold_0 (198706735-198706520) | |
| 1-142, gnl|oryCun1|scaffold_198310 (38697-38510) | |
| 1-142, gnl|panTro1|chr5 (43599202-43599386) | |
| 1-142, gnl|rheMac2|chr4 (42815643-42815826) | |
| 1-142, gnl|rn3|chr9 (10102875-10103060) | |
| 272-398, gnl|bosTau2|chr23 (13005555-13005681) | |
| 272-398, gnl|canFam2|chr12 (14485727-14485874) | |
| 272-398, gnl|danRer3|chr1 (6336243-6336377) | |
| 272-398, gnl|dasNov1|scaffold_3896 (6541-6393) | |
| 272-398, gnl|fr1|chrUn (291617036-291617185) | |
| 272-398, gnl|galGal2|chr14 (16220724-16220580) | |
| 272-398, gnl|hg17|chr6 (43010175-43010321) | |
| 272-398, gnl|Hg17|chr6 (43010189-43010315) | |
| 272-398, gnl|mm7|chr17 (44876686-44876543) | |
| 272-398, gnl|Mm7|chr17 (44876673-44876547) | |
| 272-398, gnl|monDom2|scaffold_0 (198701761-198701613) | |
| 272-398, gnl|panTro1|chr5 (43604364-43604510) | |
| 272-398, gnl|rheMac2|chr4 (42820962-42821108) | |
| 272-398, gnl|rn3|chr9 (10106884-10107027) | |
| 272-398, gnl|tetNig1|chrUn_random (13211605-13211744) | |
| 493-617, gnl|bosTau2|chr23 (13008826-13008950) | |
| 493-617, gnl|canFam2|chr12 (14489447-14489587) | |
| 493-617, gnl|danRer3|chr1 (6338804-6338937) | |
| 493-617, gnl|dasNov1|scaffold_95728 (7148-7281) | |
| 493-617, gnl|echTel1|scaffold_323377 (89346-89486) | |
| 493-617, gnl|fr1|chrUn (291618011-291618144) | |
| 493-617, gnl|galGal2|chr14 (16220084-16219953) | |
| 493-617, gnl|hg17|chr6 (43013426-43013566) | |
| 493-617, gnl|Hg17|chr6 (43013431-43013555) | |
| 493-617, gnl|loxAfr1|scaffold_48555 (362-502) | |
| 493-617, gnl|mm7|chr17 (44866856-44866716) | |
| 493-617, gnl|Mm7|chr17 (44866849-44866725) | |
| 493-617, gnl|monDom2|scaffold_0 (198700325-198700185) | |
| 493-617, gnl|oryCun1|scaffold_193147 (24678-24811) | |
| 493-617, gnl|panTro1|chr5 (43607616-43607756) | |
| 493-617, gnl|rheMac2|chr4 (42824440-42824580) | |
| 493-617, gnl|rn3|chr9 (10115339-10115479) | |
| 493-617, gnl|tetNig1|chrUn_random (13212259-13212392) | |
| 736-1380, gnl|bosTau2|chr23 (13009600-13010243) | |
| 736-1380, gnl|Hg17|chr6 (43014284-43014966) | |
| 736-1380, gnl|Mm7|chr17 (44865906-44865051) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| csp (0.161186) | |
| cag (0.151194) | |
| eep (0.122564) | |
| clu (0.119646) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) | |
| cag (0.151194) | |
| eep (0.122564) | |
| clu (0.119646) |