Ss1.1-Tes1-TES01E020013.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTCCGTCTTTCCCACTTTATTGCTCGGTGCACAAGCCCTGGGCCGCCT CTTACTTAGGTTCCGGCTCCGGCCACTCCCGTGACTTGAAGTAGCCCTTCAGGTCCTGGA GGCGGAGCGGCGGGAAGTAGGGTCCCAGCCTCTTCCGAATCCACCACTTGCCCTCGGCGG CGTGCCGGCCCCCCGGGCGGCTGAACTTGTACCTGTAGTGCTCTCCCCGGACCCACCTGG GAGGGGCCGTGCCCTCGAAGGGGTTGACGCCCAGCAGGGACAGGGCCTGGGCGTCGTTGG CCAGGAGCTTGCCCGCCAGGTGGATGATCCATTCGTTGTGCTCATAGGTCTGGAAGGCAG CGAACCACATGAGCCAGTCCAGGCGGTAGTGGTACGGAGAGATGAGGCACGGCCGCCGCC TCAGATCGCCTGGCTTACACTTGAACTCATAGTCCTTCCACTCGGCATCGGGCGCGCTGG CGTTGGGGCTGGCCGTGCCCTGCAGGATGACCTCTGTGCGCTCCTTGGTGATGCTGCCGA AGGCCCCATACGTGTTGACGATGCGGAGCGGGTGGAAGGAGCTGTTCATGATCTGCCGGG GGCTCAGCAAGTTGAGGACCACGGGGACGCTGAGCCCAGCGATCAGCACGCCCATCGCCA GGTTGACCAGGCGCCGTGCCACACAGCCGTATGTCTGCACGGCCCTGGGCCCCTGGGCCT CCTCTTCCTGCATCTTCAGGACTCGGTCCTTCAGGCCCCCAGGCCCCGAGGGAAACAGGA ACGCCAGGGTGGCGTCGTCGAAGCAGGCGAGGCTGGGCACGATGGTCAGCCAGTTGAGGA AGCTCAGGTTCCCGCTGACGATGAGAACCACCTGGAACAGGATCTGTAAGGCTCCGTGGA GGATGCACATGGAACGTCCCAGGAAGACGAAGAAGGGGACCACGAGCTCCAGGAAGTGGT TGCTGAGGGTCTCGAAGCGGTGGAACCACCACGGGGAGCGGTGCAGGACGTAGGCCATGG GGTTGGGCACCGGCTGCGTCTCATAGTGGAAATCCATGCAGGTGAGGTCCCGCCAGCACC GGTCCCCCCGGATCTTGATCAGGCCCGCTCCGAGCATGATTCTGAAAATCAGCCACCGAA AACCCCACAGAACAATCCGGGACGTGGGGGTGCCCCTGGGCAACGGGGACAGTGTCCAGA GAGGGCACAGGAAAATCCCCAGGAAGCCTGTCTCCAGGAGCTGGGACTCCCATCCAAATG AGTACCAGATCTGCCCCACGTTGACCAGGGACATGTAGAGGAGCCAGAGAGCAGCCATGA GGGCCATGTTGGCACAGCCGGAGACCAAGACGAAAGAGGAGATGCCCAGCCCGAGGAGCG CCAGGGCGTCCAGGTTGGAGTCCATGTGAGTCCAGTCCAGCAGCCAGAGGACGGTGGGGG TGGAGCTGACGGCGTCCCAGGCGCGCCCTCGGAAGTGCTGCTGCACGCGCCTCAGGTAGG CCCTGCAGGGCAGCAGCCCCCTGTCGCCAATCAGCTGCTTGTTCTGCTGGAAGGCCACCA AGAAGGCCACGAAGTAAACGAAAGCGAGGGCCTTCAGGAGCACGACCCTGGTGAGCCAGA AGGTGCCCGCGCGGAAGCGGGCCGGGCAGCTCATGGGGTCGCGCCCCGGCGGAGACGCGG GCTCCGGGCCCGCGGCCGCGGCCTTCCGCCGCCTCAGGGGATCCTCGGACGCCGCCATCG CCGGGCCCTCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTCCGTCTTTCCCACTTTATTGCTCGGTGCACAAGCCCTGGGCCGCCT CTTACTTAGGTTCCGGCTCCGGCCACTCCCGTGACTTGAAGTAGCCCTTCAGGTCCTGGA GGCGGAGCGGCGGGAAGTAGGGTCCCAGCCTCTTCCGAATCCACCACTTGCCCTCGGCGG CGTGCCGGCCCCCCGGGCGGCTGAACTTGTACCTGTAGTGCTCTCCCCGGACCCACCTGG GAGGGGCCGTGCCCTCGAAGGGGTTGACGCCCAGCAGGGACAGGGCCTGGGCGTCGTTGG CCAGGAGCTTGCCCGCCAGGTGGATGATCCATTCGTTGTGCTCATAGGTCTGGAAGGCAG CGAACCACATGAGCCAGTCCAGGCGGTAGTGGTACGGAGAGATGAGGCACGGCCGCCGCC TCAGATCGCCTGGCTTACACTTGAACTCATAGTCCTTCCACTCGGCATCGGGCGCGCTGG CGTTGGGGCTGGCCGTGCCCTGCAGGATGACCTCTGTGCGCTCCTTGGTGATGCTGCCGA AGGCCCCATACGTGTTGACGATGCGGAGCGGGTGGAAGGAGCTGTTCATGATCTGCCGGG GGCTCAGCAAGTTGAGGACCACGGGGACGCTGAGCCCAGCGATCAGCACGCCCATCGCCA GGTTGACCAGGCGCCGTGCCACACAGCCGTATGTCTGCACGGCCCTGGGCCCCTGGGCCT CCTCTTCCTGCATCTTCAGGACTCGGTCCTTCAGGCCCCCAGGCCCCGAGGGAAACAGGA ACGCCAGGGTGGCGTCGTCGAAGCAGGCGAGGCTGGGCACGATGGTCAGCCAGTTGAGGA AGCTCAGGTTCCCGCTGACGATGAGAACCACCTGGAACAGGATCTGTAAGGCTCCGTGGA GGATGCACATGGAACGTCCCAGGAAGACGAAGAAGGGGACCACGAGCTCCAGGAAGTGGT TGCTGAGGGTCTCGAAGCGGTGGAACCACCACGGGGAGCGGTGCAGGACGTAGGCCATGG GGTTGGGCACCGGCTGCGTCTCATAGTGGAAATCCATGCAGGTGAGGTCCCGCCAGCACC GGTCCCCCCGGATCTTGATCAGGCCCGCTCCGAGCATGATTCTGAAAATCAGCCACCGAA AACCCCACAGAACAATCCGGGACGTGGGGGTGCCCCTGGGCAACGGGGACAGTGTCCAGA GAGGGCACAGGAAAATCCCCAGGAAGCCTGTCTCCAGGAGCTGGGACTCCCATCCAAATG AGTACCAGATCTGCCCCACGTTGACCAGGGACATGTAGAGGAGCCAGAGAGCAGCCATGA GGGCCATGTTGGCACAGCCGGAGACCAAGACGAAAGAGGAGATGCCCAGCCCGAGGAGCG CCAGGGCGTCCAGGTTGGAGTCCATGTGAGTCCAGTCCAGCAGCCAGAGGACGGTGGGGG TGGAGCTGACGGCGTCCCAGGCGCGCCCTCGGAAGTGCTGCTGCACGCGCCTCAGGTAGG CCCTGCAGGGCAGCAGCCCCCTGTCGCCAATCAGCTGCTTGTTCTGCTGGAAGGCCACCA AGAAGGCCACGAAGTAAACGAAAGCGAGGGCCTTCAGGAGCACGACCCTGGTGAGCCAGA AGGTGCCCGCGCGGAAGCGGGCCGGGCAGCTCATGGGGTCGCGCCCCGGCGGAGACGCGG GCTCCGGGCCCGCGGCCGCGGCCTTCCGCCGCCTCAGGGGATCCTCGGACGCCGCCATCG CCGGGCCCTCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 676-791, - strand, RNAz p=0.998142 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 676-791, - strand, RNAz p=0.998142 |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 86-244, gnl|bosTau2|chr25 (1073051-1072892) | |
| 86-244, gnl|canFam2|chr6 (42803800-42803620) | |
| 86-244, gnl|danRer3|chrNA (121717004-121717197) | |
| 86-244, gnl|echTel1|scaffold_319198 (30757-30943) | |
| 86-244, gnl|fr1|chrUn (182163471-182163655) | |
| 86-244, gnl|hg17|chr16 (844551-844738) | |
| 86-244, gnl|Hg17|chr16 (844561-844715) | |
| 86-244, gnl|mm7|chr17 (23845912-23845732) | |
| 86-244, gnl|Mm7|chr17 (23845904-23845746) | |
| 86-244, gnl|monDom2|scaffold_310 (87934-88117) | |
| 86-244, gnl|panTro1|chr18 (892851-893038) | |
| 86-244, gnl|rheMac2|chr20 (838320-838494) | |
| 86-244, gnl|rn3|chr10 (14917997-14917817) | |
| 86-244, gnl|tetNig1|chrUn_random (107499047-107499207) | |
| 350-536, gnl|bosTau2|chr25 (1071916-1071730) | |
| 350-536, gnl|canFam2|chr6 (42802315-42802099) | |
| 350-536, gnl|danRer3|chrNA (121723166-121723354) | |
| 350-536, gnl|echTel1|scaffold_319198 (31820-32023) | |
| 350-536, gnl|fr1|chrUn (182164281-182164471) | |
| 350-536, gnl|galGal2|chr14 (7944155-7943945) | |
| 350-536, gnl|hg17|chr16 (859880-860091) | |
| 350-536, gnl|Hg17|chr16 (859884-860602) | |
| 350-536, gnl|loxAfr1|scaffold_46476 (32584-32377) | |
| 350-536, gnl|mm7|chr17 (23838812-23838602) | |
| 350-536, gnl|Mm7|chr17 (23838808-23838622) | |
| 350-536, gnl|monDom2|scaffold_49 (10780181-10780392) | |
| 350-536, gnl|oryCun1|scaffold_138846 (4202-4053) | |
| 350-536, gnl|panTro1|chr18 (905915-906127) | |
| 350-536, gnl|rheMac2|chr20 (853315-853526) | |
| 350-536, gnl|rn3|chr10 (14912252-14912046) | |
| 350-536, gnl|tetNig1|chrUn_random (107499594-107499789) | |
| 350-536, gnl|xenTro1|scaffold_60 (2789037-2788845) | |
| 676-791, gnl|bosTau2|chr25 (1070998-1070883) | |
| 676-791, gnl|Hg17|chr16 (861155-861262) | |
| 835-1041, gnl|bosTau2|chr25 (1061160-1060953) | |
| 835-1041, gnl|Hg17|chr16 (869558-869740) | |
| 835-1041, gnl|Mm7|chr17 (23828562-23828387) | |
| 1105-1255, gnl|bosTau2|chr25 (1048473-1048323) | |
| 1105-1255, gnl|canFam2|chr6 (42772457-42772270) | |
| 1105-1255, gnl|dasNov1|scaffold_39760 (14711-14907) | |
| 1105-1255, gnl|echTel1|scaffold_160392 (2171-2338) | |
| 1105-1255, gnl|fr1|chrUn (182168493-182168662) | |
| 1105-1255, gnl|galGal2|chr14 (7858466-7858282) | |
| 1105-1255, gnl|hg17|chr16 (900892-901086) | |
| 1105-1255, gnl|Hg17|chr16 (900931-901081) | |
| 1105-1255, gnl|mm7|chr17 (23795450-23795257) | |
| 1105-1255, gnl|Mm7|chr17 (23795410-23795260) | |
| 1105-1255, gnl|monDom2|scaffold_49 (11258353-11258540) | |
| 1105-1255, gnl|panTro1|chr18 (948227-948420) | |
| 1105-1255, gnl|rn3|chr10 (14870305-14870112) | |
| 1263-1587, gnl|bosTau2|chr25 (1027781-1027455) | |
| 1263-1587, gnl|canFam2|chr6 (42737872-42737510) | |
| 1263-1587, gnl|danRer3|chr21 (30125801-30125464) | |
| 1263-1587, gnl|fr1|chrUn (182169708-182170038) | |
| 1263-1587, gnl|galGal2|chr14 (7819691-7819337) | |
| 1263-1587, gnl|hg17|chr16 (944342-944706) | |
| 1263-1587, gnl|Hg17|chr16 (944355-944681) | |
| 1263-1587, gnl|loxAfr1|scaffold_28926 (3175-3529) | |
| 1263-1587, gnl|mm7|chr17 (23768777-23768423) | |
| 1263-1587, gnl|Mm7|chr17 (23768771-23768445) | |
| 1263-1587, gnl|monDom2|scaffold_49 (11535280-11535654) | |
| 1263-1587, gnl|panTro1|chr18 (997978-998342) | |
| 1263-1587, gnl|rheMac2|chr20 (928465-928829) | |
| 1263-1587, gnl|rn3|chr10 (14846150-14845796) | |
| 1263-1587, gnl|xenTro1|scaffold_60 (2649749-2649418) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 86-244, gnl|bosTau2|chr25 (1073051-1072892) | |
| 86-244, gnl|canFam2|chr6 (42803800-42803620) | |
| 86-244, gnl|danRer3|chrNA (121717004-121717197) | |
| 86-244, gnl|echTel1|scaffold_319198 (30757-30943) | |
| 86-244, gnl|fr1|chrUn (182163471-182163655) | |
| 86-244, gnl|hg17|chr16 (844551-844738) | |
| 86-244, gnl|Hg17|chr16 (844561-844715) | |
| 86-244, gnl|mm7|chr17 (23845912-23845732) | |
| 86-244, gnl|Mm7|chr17 (23845904-23845746) | |
| 86-244, gnl|monDom2|scaffold_310 (87934-88117) | |
| 86-244, gnl|panTro1|chr18 (892851-893038) | |
| 86-244, gnl|rheMac2|chr20 (838320-838494) | |
| 86-244, gnl|rn3|chr10 (14917997-14917817) | |
| 86-244, gnl|tetNig1|chrUn_random (107499047-107499207) | |
| 350-536, gnl|bosTau2|chr25 (1071916-1071730) | |
| 350-536, gnl|canFam2|chr6 (42802315-42802099) | |
| 350-536, gnl|danRer3|chrNA (121723166-121723354) | |
| 350-536, gnl|echTel1|scaffold_319198 (31820-32023) | |
| 350-536, gnl|fr1|chrUn (182164281-182164471) | |
| 350-536, gnl|galGal2|chr14 (7944155-7943945) | |
| 350-536, gnl|hg17|chr16 (859880-860091) | |
| 350-536, gnl|Hg17|chr16 (859884-860602) | |
| 350-536, gnl|loxAfr1|scaffold_46476 (32584-32377) | |
| 350-536, gnl|mm7|chr17 (23838812-23838602) | |
| 350-536, gnl|Mm7|chr17 (23838808-23838622) | |
| 350-536, gnl|monDom2|scaffold_49 (10780181-10780392) | |
| 350-536, gnl|oryCun1|scaffold_138846 (4202-4053) | |
| 350-536, gnl|panTro1|chr18 (905915-906127) | |
| 350-536, gnl|rheMac2|chr20 (853315-853526) | |
| 350-536, gnl|rn3|chr10 (14912252-14912046) | |
| 350-536, gnl|tetNig1|chrUn_random (107499594-107499789) | |
| 350-536, gnl|xenTro1|scaffold_60 (2789037-2788845) | |
| 676-791, gnl|bosTau2|chr25 (1070998-1070883) | |
| 676-791, gnl|Hg17|chr16 (861155-861262) | |
| 835-1041, gnl|bosTau2|chr25 (1061160-1060953) | |
| 835-1041, gnl|Hg17|chr16 (869558-869740) | |
| 835-1041, gnl|Mm7|chr17 (23828562-23828387) | |
| 1105-1255, gnl|bosTau2|chr25 (1048473-1048323) | |
| 1105-1255, gnl|canFam2|chr6 (42772457-42772270) | |
| 1105-1255, gnl|dasNov1|scaffold_39760 (14711-14907) | |
| 1105-1255, gnl|echTel1|scaffold_160392 (2171-2338) | |
| 1105-1255, gnl|fr1|chrUn (182168493-182168662) | |
| 1105-1255, gnl|galGal2|chr14 (7858466-7858282) | |
| 1105-1255, gnl|hg17|chr16 (900892-901086) | |
| 1105-1255, gnl|Hg17|chr16 (900931-901081) | |
| 1105-1255, gnl|mm7|chr17 (23795450-23795257) | |
| 1105-1255, gnl|Mm7|chr17 (23795410-23795260) | |
| 1105-1255, gnl|monDom2|scaffold_49 (11258353-11258540) | |
| 1105-1255, gnl|panTro1|chr18 (948227-948420) | |
| 1105-1255, gnl|rn3|chr10 (14870305-14870112) | |
| 1263-1587, gnl|bosTau2|chr25 (1027781-1027455) | |
| 1263-1587, gnl|canFam2|chr6 (42737872-42737510) | |
| 1263-1587, gnl|danRer3|chr21 (30125801-30125464) | |
| 1263-1587, gnl|fr1|chrUn (182169708-182170038) | |
| 1263-1587, gnl|galGal2|chr14 (7819691-7819337) | |
| 1263-1587, gnl|hg17|chr16 (944342-944706) | |
| 1263-1587, gnl|Hg17|chr16 (944355-944681) | |
| 1263-1587, gnl|loxAfr1|scaffold_28926 (3175-3529) | |
| 1263-1587, gnl|mm7|chr17 (23768777-23768423) | |
| 1263-1587, gnl|Mm7|chr17 (23768771-23768445) | |
| 1263-1587, gnl|monDom2|scaffold_49 (11535280-11535654) | |
| 1263-1587, gnl|panTro1|chr18 (997978-998342) | |
| 1263-1587, gnl|rheMac2|chr20 (928465-928829) | |
| 1263-1587, gnl|rn3|chr10 (14846150-14845796) | |
| 1263-1587, gnl|xenTro1|scaffold_60 (2649749-2649418) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cov (0.264306) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ese (0.126502) | |
| eep (0.122564) | |
| jej (0.0989218) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.264306) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ese (0.126502) | |
| eep (0.122564) | |
| jej (0.0989218) |