Ss1.1-Tes1-TES01E020058.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAAGGGAAGGCAGCGCGCGGGCTGCACGGCCGGTGTGCGGGCCGACGATCAAGTTCAGG CTGCCAGCCCCGGGCCCGGCGGTGCCATGGACGGCCTGCGCCAGCGCTTCGAGCGCTTTC TGGAACAGAGGAACTTGGCCACCGAAGCGCTAGGGGCGCTCGAAGCCAAGACCGGTGTCG ACAAGCGGTACTTGGCCGCGGGAGCCGCCACTCTACTAAGCCTGTATCTTCTGTTCGGCC ACGGGGCGTCTCTGCTGTGCAACCTCATCGGCTTTGCATACCCAGCATATGCTTCAATCA AAGCTATCGAGAGCCCAAGCAAAGAGGACGACACTGTGTGGCTCACCTACTGGGTGGTGT ACGGCCTGTTCGGGCTGGCCGAGTTCTTCAGCGATCTACTCCTGTTCTGGTTCCCTTTCT ACTACGCGGGCAAGTGCGCCTTCCTGTTGTTCTGCATGATTCCCGGCCCCTGGAACGGGG CTCACATGCTGTATCATCGCGCCATCCGTCCACTGTTTCTAAAGCATCACGAGGCCGTGG ACAGCATCATGAACGACCTCAGCGGACGGGCCCTGGATGTGGCAGCCGGAATAACTCGGG ACGACAAAGCAAGCATGACTCACCTCAAGAAGGGCAAGTGAAGCCCCTGGCCAGCCCCTG CATGAATGAGCCGGCTGGTGAGCTGGAGGACCTGTCACACCCCAAGTCCTCTGTGGATTC CTCAACTGACTCCCCAGCAGAGCCCACCAGCAGCCCTTCATCCCCAGCCAAGCCAGCCCT CAGGAGCTCCACCAACCTGGGCCAGTCCCAGCATCAGTCCCTGGCCACTGGCTCTGCCAA CAGCTCCCAGCTGCCCGGCAAGCTCCGGGGTGGGCTTCAGTCTCGGGCCAACTCCTCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAAGGGAAGGCAGCGCGCGGGCTGCACGGCCGGTGTGCGGGCCGACGATCAAGTTCAGG CTGCCAGCCCCGGGCCCGGCGGTGCCATGGACGGCCTGCGCCAGCGCTTCGAGCGCTTTC TGGAACAGAGGAACTTGGCCACCGAAGCGCTAGGGGCGCTCGAAGCCAAGACCGGTGTCG ACAAGCGGTACTTGGCCGCGGGAGCCGCCACTCTACTAAGCCTGTATCTTCTGTTCGGCC ACGGGGCGTCTCTGCTGTGCAACCTCATCGGCTTTGCATACCCAGCATATGCTTCAATCA AAGCTATCGAGAGCCCAAGCAAAGAGGACGACACTGTGTGGCTCACCTACTGGGTGGTGT ACGGCCTGTTCGGGCTGGCCGAGTTCTTCAGCGATCTACTCCTGTTCTGGTTCCCTTTCT ACTACGCGGGCAAGTGCGCCTTCCTGTTGTTCTGCATGATTCCCGGCCCCTGGAACGGGG CTCACATGCTGTATCATCGCGCCATCCGTCCACTGTTTCTAAAGCATCACGAGGCCGTGG ACAGCATCATGAACGACCTCAGCGGACGGGCCCTGGATGTGGCAGCCGGAATAACTCGGG ACGACAAAGCAAGCATGACTCACCTCAAGAAGGGCAAGTGAAGCCCCTGGCCAGCCCCTG CATGAATGAGCCGGCTGGTGAGCTGGAGGACCTGTCACACCCCAAGTCCTCTGTGGATTC CTCAACTGACTCCCCAGCAGAGCCCACCAGCAGCCCTTCATCCCCAGCCAAGCCAGCCCT CAGGAGCTCCACCAACCTGGGCCAGTCCCAGCATCAGTCCCTGGCCACTGGCTCTGCCAA CAGCTCCCAGCTGCCCGGCAAGCTCCGGGGTGGGCTTCAGTCTCGGGCCAACTCCTCCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 767-884, - strand, RNAz p=0.996771 | |
| 793-899, + strand, RNAz p=0.85222 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 767-884, - strand, RNAz p=0.996771 | |
| 793-899, + strand, RNAz p=0.85222 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_138393, + |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-202, gnl|bosTau2|chr7 (28996272-28996071) | |
| 1-202, gnl|Hg17|chr19 (1442183-1442384) | |
| 1-202, gnl|Mm7|chr10 (80112541-80112739) | |
| 296-425, gnl|bosTau2|chr10 (9523474-9523345) | |
| 296-425, gnl|canFam2|chr3 (3106191-3106018) | |
| 296-425, gnl|danRer3|chr24 (29056483-29056302) | |
| 296-425, gnl|dasNov1|scaffold_107186 (3492-3320) | |
| 296-425, gnl|echTel1|scaffold_324424 (44272-44099) | |
| 296-425, gnl|fr1|chrUn (171802185-171802342) | |
| 296-425, gnl|galGal2|chr10_random (1705398-1705223) | |
| 296-425, gnl|hg17|chr5 (112265961-112266134) | |
| 296-425, gnl|Hg17|chr5 (112266114-112265985) | |
| 296-425, gnl|mm7|chr18 (34732530-34732715) | |
| 296-425, gnl|Mm7|chr18 (34732695-34732566) | |
| 296-425, gnl|monDom2|scaffold_55 (487887-487720) | |
| 296-425, gnl|oryCun1|scaffold_214644 (43604-43752) | |
| 296-425, gnl|panTro1|chr4 (118393966-118394139) | |
| 296-425, gnl|rheMac2|chr6 (109226763-109226937) | |
| 296-425, gnl|rn3|chr18 (26853056-26853232) | |
| 296-425, gnl|tetNig1|chrUn_random (162344761-162344901) | |
| 296-425, gnl|xenTro1|scaffold_198 (1201343-1201516) | |
| 433-603, gnl|bosTau2|chr7 (28992447-28992277) | |
| 433-603, gnl|canFam2|chr20 (60506470-60506281) | |
| 433-603, gnl|danRer3|chr15 (5041679-5041854) | |
| 433-603, gnl|echTel1|scaffold_98936 (5444-5608) | |
| 433-603, gnl|fr1|chrUn (171802022-171801822) | |
| 433-603, gnl|hg17|chr19 (1447283-1447472) | |
| 433-603, gnl|Hg17|chr19 (1447282-1447452) | |
| 433-603, gnl|mm7|chr10 (80116358-80116550) | |
| 433-603, gnl|Mm7|chr10 (80116357-80116527) | |
| 433-603, gnl|monDom2|scaffold_75 (5578019-5577833) | |
| 433-603, gnl|oryCun1|scaffold_83931 (3649-3469) | |
| 433-603, gnl|rheMac2|chr19 (1263519-1263708) | |
| 433-603, gnl|rn3|chr7 (10888041-10887863) | |
| 433-603, gnl|tetNig1|chrUn_random (6046967-6046782) | |
| 433-603, gnl|xenTro1|scaffold_198 (1199892-1199707) | |
| 606-900, gnl|bosTau2|chr7 (28991747-28991453) | |
| 606-900, gnl|canFam2|chr20 (60505909-60505629) | |
| 606-900, gnl|hg17|chr19 (1448121-1448419) | |
| 606-900, gnl|Hg17|chr19 (1448175-1448499) | |
| 606-900, gnl|mm7|chr10 (80117446-80117824) | |
| 606-900, gnl|Mm7|chr10 (80117509-80117989) | |
| 606-900, gnl|rheMac2|chr19 (1264384-1264682) | |
| 606-900, gnl|rn3|chr7 (10886831-10886312) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-202, gnl|bosTau2|chr7 (28996272-28996071) | |
| 1-202, gnl|Hg17|chr19 (1442183-1442384) | |
| 1-202, gnl|Mm7|chr10 (80112541-80112739) | |
| 296-425, gnl|bosTau2|chr10 (9523474-9523345) | |
| 296-425, gnl|canFam2|chr3 (3106191-3106018) | |
| 296-425, gnl|danRer3|chr24 (29056483-29056302) | |
| 296-425, gnl|dasNov1|scaffold_107186 (3492-3320) | |
| 296-425, gnl|echTel1|scaffold_324424 (44272-44099) | |
| 296-425, gnl|fr1|chrUn (171802185-171802342) | |
| 296-425, gnl|galGal2|chr10_random (1705398-1705223) | |
| 296-425, gnl|hg17|chr5 (112265961-112266134) | |
| 296-425, gnl|Hg17|chr5 (112266114-112265985) | |
| 296-425, gnl|mm7|chr18 (34732530-34732715) | |
| 296-425, gnl|Mm7|chr18 (34732695-34732566) | |
| 296-425, gnl|monDom2|scaffold_55 (487887-487720) | |
| 296-425, gnl|oryCun1|scaffold_214644 (43604-43752) | |
| 296-425, gnl|panTro1|chr4 (118393966-118394139) | |
| 296-425, gnl|rheMac2|chr6 (109226763-109226937) | |
| 296-425, gnl|rn3|chr18 (26853056-26853232) | |
| 296-425, gnl|tetNig1|chrUn_random (162344761-162344901) | |
| 296-425, gnl|xenTro1|scaffold_198 (1201343-1201516) | |
| 433-603, gnl|bosTau2|chr7 (28992447-28992277) | |
| 433-603, gnl|canFam2|chr20 (60506470-60506281) | |
| 433-603, gnl|danRer3|chr15 (5041679-5041854) | |
| 433-603, gnl|echTel1|scaffold_98936 (5444-5608) | |
| 433-603, gnl|fr1|chrUn (171802022-171801822) | |
| 433-603, gnl|hg17|chr19 (1447283-1447472) | |
| 433-603, gnl|Hg17|chr19 (1447282-1447452) | |
| 433-603, gnl|mm7|chr10 (80116358-80116550) | |
| 433-603, gnl|Mm7|chr10 (80116357-80116527) | |
| 433-603, gnl|monDom2|scaffold_75 (5578019-5577833) | |
| 433-603, gnl|oryCun1|scaffold_83931 (3649-3469) | |
| 433-603, gnl|rheMac2|chr19 (1263519-1263708) | |
| 433-603, gnl|rn3|chr7 (10888041-10887863) | |
| 433-603, gnl|tetNig1|chrUn_random (6046967-6046782) | |
| 433-603, gnl|xenTro1|scaffold_198 (1199892-1199707) | |
| 606-900, gnl|bosTau2|chr7 (28991747-28991453) | |
| 606-900, gnl|canFam2|chr20 (60505909-60505629) | |
| 606-900, gnl|hg17|chr19 (1448121-1448419) | |
| 606-900, gnl|Hg17|chr19 (1448175-1448499) | |
| 606-900, gnl|mm7|chr10 (80117446-80117824) | |
| 606-900, gnl|Mm7|chr10 (80117509-80117989) | |
| 606-900, gnl|rheMac2|chr19 (1264384-1264682) | |
| 606-900, gnl|rn3|chr7 (10886831-10886312) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| eje (0.395335) | |
| col (0.195008) | |
| eli (0.151814) | |
| pty (0.142714) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eje (0.395335) | |
| col (0.195008) | |
| eli (0.151814) | |
| pty (0.142714) |