Non-Coding RNA Search

Ss1.1-Tes1-TES01E030002.5

Sequence:


               
               CCGGCATCCAGGAACAGGGAGTGCTCAGTGCCCCTTCCCTGTACCACCCCCCATGCTGCC
CCTGTCCCGCTGGCTGAGATCTGTGGGGCTCTTCTTGCTGCCAGCCCCCTGCTGGGTGCC
CCGGGAAAGGTGGCTGGGTCCCCTACGGCGGCCCTCCCTGGTGCACGGGTGCCCAGTCCT
GGGGGCATGGCACAGTGCTCGCTGCTGGTGCCAAGCGTGGACAGAGGAGCCTCGAGCATT
TTACTCCTCCCTCAGAATGAACGGAGACCAGAAATTGGACGCTTATGCCCGAGAAAGGCA
GGATTTCATCCAGCACTTCTCCCAGATCGTCAAGGTGCTGACTGAGGAGGACATCGGGCA
CCCAGAGATAGGGGATGCTATTGCCCGACTCAAGGAGGTTCTGGAGTACAATGTTGTCGG
AGGCAAGTACAACCGAGGTATCACGGTGCTGGTGGTGTTCCGGGAGCTGGTGGAGCCCAG
GAAGCAGGATGCTGATAGTCTCCAGCGGGCCCTGACCGTGGGCTGGTGTATTGAACTGCT
CCAAGCCTTCTTCCTGGTGGCAGACGACATCGAGGACTCCTCCCTCACCCGCCGGGGCCA
GACCTGCTGGTATCGGAAGCCAGGTATAGGTTTGGATGCCATCAATGATGCTTTCCTTCT
GGAAGCTTGTATCTACCGCCTGCTGAAGTTCTACTGCCGGGAGCAGCCCTATTACCTGAA
CCTGATTGAGCTCTTCTTGCAGACTTCCTACAACACTGAGATCGGACAGACCCTGGACCT
CATCGCCGGCCCCCAGGGCAACGTGGATCTTAGCAGGTTCACTGAAAAGAGGTACAAGTC
TATTGTCAAGTACAAGACAGCTTTCTACTCTTTCTACCTGCCCGTGGCTGCTGCCATGTA
TATGGCAGGCATTGACGGGGAGAAGGAGCACGCCAATGCCAAGAAGATCCTGATGGAGAT
GGGAGAGTTCTTTCAGATTCAGGACGATTACCTCGACCTCTTTGGGGACCCCAGCGTGAC
AGGCAAGATCGGCACAGACATCCAGGACAACAAGTGCAGCTGGCTGGTGGTTCAGTGTCT
GCAGCGGGCCTCTCCGGAGCAGCGCCAAATCCTGCAGGAGAACTATGGGCAGAAGGATGC
TGAGAAGGTGGCCCGGGTGAAGGCGCTGTATGAGGAGATGAATCTGCAGGCAGTGTTCCT
GCAGTACGAGGAAGACAGTTACAGCCACCTGATGGGTCTCATCGAGCAGTATGCTGCGCC
CCTGCCCCCGGCCATCTTCCTGGAGCTGGCACACAAGATCTACAAGAGAAGAAAGTAGCC
CAGAGACTGAAGGTGGGAGGGGGGGCTCTCAATAAATTACTATCTAACCTCCAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCATCCAGGAACAGGGAGTGCTCAGTGCCCCTTCCCTGTACCACCCCCCATGCTGCC
CCTGTCCCGCTGGCTGAGATCTGTGGGGCTCTTCTTGCTGCCAGCCCCCTGCTGGGTGCC
CCGGGAAAGGTGGCTGGGTCCCCTACGGCGGCCCTCCCTGGTGCACGGGTGCCCAGTCCT
GGGGGCATGGCACAGTGCTCGCTGCTGGTGCCAAGCGTGGACAGAGGAGCCTCGAGCATT
TTACTCCTCCCTCAGAATGAACGGAGACCAGAAATTGGACGCTTATGCCCGAGAAAGGCA
GGATTTCATCCAGCACTTCTCCCAGATCGTCAAGGTGCTGACTGAGGAGGACATCGGGCA
CCCAGAGATAGGGGATGCTATTGCCCGACTCAAGGAGGTTCTGGAGTACAATGTTGTCGG
AGGCAAGTACAACCGAGGTATCACGGTGCTGGTGGTGTTCCGGGAGCTGGTGGAGCCCAG
GAAGCAGGATGCTGATAGTCTCCAGCGGGCCCTGACCGTGGGCTGGTGTATTGAACTGCT
CCAAGCCTTCTTCCTGGTGGCAGACGACATCGAGGACTCCTCCCTCACCCGCCGGGGCCA
GACCTGCTGGTATCGGAAGCCAGGTATAGGTTTGGATGCCATCAATGATGCTTTCCTTCT
GGAAGCTTGTATCTACCGCCTGCTGAAGTTCTACTGCCGGGAGCAGCCCTATTACCTGAA
CCTGATTGAGCTCTTCTTGCAGACTTCCTACAACACTGAGATCGGACAGACCCTGGACCT
CATCGCCGGCCCCCAGGGCAACGTGGATCTTAGCAGGTTCACTGAAAAGAGGTACAAGTC
TATTGTCAAGTACAAGACAGCTTTCTACTCTTTCTACCTGCCCGTGGCTGCTGCCATGTA
TATGGCAGGCATTGACGGGGAGAAGGAGCACGCCAATGCCAAGAAGATCCTGATGGAGAT
GGGAGAGTTCTTTCAGATTCAGGACGATTACCTCGACCTCTTTGGGGACCCCAGCGTGAC
AGGCAAGATCGGCACAGACATCCAGGACAACAAGTGCAGCTGGCTGGTGGTTCAGTGTCT
GCAGCGGGCCTCTCCGGAGCAGCGCCAAATCCTGCAGGAGAACTATGGGCAGAAGGATGC
TGAGAAGGTGGCCCGGGTGAAGGCGCTGTATGAGGAGATGAATCTGCAGGCAGTGTTCCT
GCAGTACGAGGAAGACAGTTACAGCCACCTGATGGGTCTCATCGAGCAGTATGCTGCGCC
CCTGCCCCCGGCCATCTTCCTGGAGCTGGCACACAAGATCTACAAGAGAAGAAAGTAGCC
CAGAGACTGAAGGTGGGAGGGGGGGCTCTCAATAAATTACTATCTAACCTCCAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55957735|emb|CAI12715.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55957735|emb|CAI12715.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               353-472, + strand, RNAz p=0.811184

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               353-472, + strand, RNAz p=0.811184

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               234-1383, gnl|bosTau2|chr21 (49355013-49353883)
               

               
               234-1383, gnl|Hg17|chrX (44092945-44091459)
               

               
               234-1383, gnl|Mm7|chr10 (93337542-93338692)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               234-1383, gnl|bosTau2|chr21 (49355013-49353883)
               

               
               234-1383, gnl|Hg17|chrX (44092945-44091459)
               

               
               234-1383, gnl|Mm7|chr10 (93337542-93338692)

Expressed library(ies): 32 entry(ies)

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Expressed library(ies): 32 entry(ies)

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               cov (1.45368)
               

               
               jej (0.791374)
               

               
               ece (0.45861)
               

               
               ute (0.398353)
               

               
               col (0.390016)
               

               
               eep (0.367692)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               cag (0.302389)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               csk (0.281492)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (1.45368)
               

               
               jej (0.791374)
               

               
               ece (0.45861)
               

               
               ute (0.398353)
               

               
               col (0.390016)
               

               
               eep (0.367692)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               cag (0.302389)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               csk (0.281492)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	234-1383, gnl\|bosTau2\|chr21 (49355013-49353883)
	234-1383, gnl\|Hg17\|chrX (44092945-44091459)
	234-1383, gnl\|Mm7\|chr10 (93337542-93338692)

	cov (1.45368)
	jej (0.791374)
	ece (0.45861)
	ute (0.398353)
	col (0.390016)
	eep (0.367692)
	ebs (0.354904)
	fbs (0.350693)
	cag (0.302389)
	cte (0.29274)
	hyp (0.285673)
	csk (0.281492)
	nca (0.273748)
	fce (0.271592)
	nlu (0.191681)
	ton (0.1755)
	duo (0.172801)
	cut (0.169924)
	fhi (0.169578)
	cje (0.165235)
	cli (0.152812)
	eli (0.151814)
	lnt (0.142308)
	nmm (0.132802)
	ese (0.126502)
	cly (0.120642)
	eru (0.120048)
	clu (0.119646)
	pgl (0.118483)
	ecc (0.115035)
	spc (0.113366)
	nbm (0.0993246)