Ss1.1-Tes1-TES01E040018.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCAGACCGCGGGCAGGTGACGGTCGCTGGGCAGCGAGCGGCGGCGATGGCTACCGTGAT GGCAGCGACGGCGGCGGAGCGGGCGGTGCTGGAGGAGGAGTTTCGCTGGTTATTGCACGA TGAGGTGCACGCTGTGCTAAGGCAGCTACAGGACATCCTCAAGGAGGCCTCTCTTCGCTT CACTCTGCCGGGCTCAGGCACGGAGGGGCCCACGAAGCAGGAGAACTTCATCCTGGGCAG CTGTGGCACAGACCAGGTGAAGGGCGTGCTGACGCTGCAAGGGGATGCCCTGAGCCAGGC GGACGTGAACCTGAAGATGCCCAGGAACAACCAGCTGCTGCACTTCGCCTTCCGGGAGGA CAAGCAGTGGAAGCTGCAGCAGATCCAAGATGCCAGAAACCATGTGAGCCAAGCCATTTA CCTTCTCGCCAACCGGGACGAGAACTACCAGTTCAGGACAGGAGCAGAGGTCCTCAAGCT GATGGACGCAGTGATGCTGCAGCTGACCAGAGCCCGAAACCGGCTCACCACCCCGGCCAC CCTCACTCTGCCTGAGATCGCTGCCAGCGGCCTCACGCGGATGTTCGCCCCCGCCCTGCC CTCAGACCTGCTGGTCAATTTCTACATCAACCTCAACAAGCTCTGCCTCACCGTGTACCA GCTGCACGCCCTGCAGCCCAACTCCACCAAGAACTTCCGCCCGGCTGGAGGCGCTGTGCT CCACAGCCCCGGGGCCATGTTTGAGTGGGGCGCACAGCGTCTGGAGGTGAGCCACGTGCA CAAGGTGGAGTGTGTGATCCCCTGGCTCAATGACGCCCTGGTCTTCTTCACCGTCTCCCT GCAGCTCTGCCAGCAGCTCAAGGACAAGATCTCCGTGTTCTCCAGCTACTGGAGCTACAG GCCCTTCTGAGCGGAGCGCCCAAGACCCGGGCCCCTGGGCATGGCCCCCCGCCCAGGGGC CCCTGTCCCCCCACCGCCTCAGAGTGCCAGCCAGAGCCAGAGCTGTGCACCATGGGCTAT TTATTTCCCTCTTCACCCTGTCCTGCCTGTCACGTCTGCATGGATGGACCTGAACTCTGG GACGAAGGGATAGTGGCTTGCGGTTTGTTTTGGAATGGGGGGGGAGGGGTCAGGAAGGTG GGGCTGTGAGGTGGCCGAAGTCCCAGCCCTGCCCTCCGCAGAAGGCTGGAACCTTTGGAC TCAGGGTAGGGCTGGCCCTCCTCCCTCCCTCCCCTCCCTGGGGCAGCTGAGGACGTTGAG GGGAGCCACACACGCCCCGCCCCTGGAGGGCGTGGCATGGGTGGTGGCCCTAGGCTCTGT GTCAGGAGAGGGGGACAGAAGGCGCCCACCATGAGCTGTGATGCCCTTATCTGTGTTCAC TCCATGACCCTGCTGGGGCCTCTGAGGAATAAAGATCATCTGACTTTGCCTGGAGCCCTC GTGTCTGTCTGAGTGGGGACCTGGCCAGGGCTTCGTGATGGCCAGGAGCTGGCAGAGTAC CCAGGGACTGCGGACTGAGCCCCTGGCCTCCCAGGTGCCAAGGGGCCAAGTGGGATGGTC ACAGACAGTCACTGAGTGGCTACAGCAGGTCACCTAAGGTCTCCTGGGGACAGTCATTCC AGCTGAAGGCTGAGACCTGGGGGCATCTAGAAGAAGGGGGAGGGGGGGGCTGCCCTGTCC GTCCATCCCCCCACACACACAAGAGGCTCAGAACTCGCTCCAGACTCCGGCTTTGGCTGA ACGAGGCATGGTTCTTGCTGTCCGGCAGACAAAGACGAGGGGCAGGGCTCTCCGGCTAAG GTTCCAGGGCCAAGTTATCAACCCCCCAGGAGCGTTCCTTCTGAGGCCTGGAGGAGTGGC GGTCACAGCAGCTGCAGCAGCAGCAGTGGATGAAGACGAGCAGCAGCAGGAGCAGCACGA CGCCGAGGAAGATGAGGAAGATGACGAAGGCCCCGGTGTCCCACTGGGACTGGAACAGCT GGTGGCTCCTCAGCTTCCCCAGCACTTGCTGGCCTGTGGCGCTCAGCTCCTGCTCCAGGC CCGCCCTTGACAAAGCCATCTCAGCCGGACGGTCCTGGGTGCCACCTGCCCAGCCCCCCA GTGGGCCGCCTCAGAACCCTGGGCTCCTCTGGGACTGCCGAGTCCAGGCCTCCGACAGTC CAGCCCAGGCCCTGCCTCTCTTCTCGTCTCAACGACCCTGACCCTGGCCCGGGCAGCCCG TTCCCCCCACCAGCCCCAGCCCTGAGCCCCCACCTGCCTTGGAGCTTCCCGGCCAGGCAA GTCCCTGGTCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCAGACCGCGGGCAGGTGACGGTCGCTGGGCAGCGAGCGGCGGCGATGGCTACCGTGAT GGCAGCGACGGCGGCGGAGCGGGCGGTGCTGGAGGAGGAGTTTCGCTGGTTATTGCACGA TGAGGTGCACGCTGTGCTAAGGCAGCTACAGGACATCCTCAAGGAGGCCTCTCTTCGCTT CACTCTGCCGGGCTCAGGCACGGAGGGGCCCACGAAGCAGGAGAACTTCATCCTGGGCAG CTGTGGCACAGACCAGGTGAAGGGCGTGCTGACGCTGCAAGGGGATGCCCTGAGCCAGGC GGACGTGAACCTGAAGATGCCCAGGAACAACCAGCTGCTGCACTTCGCCTTCCGGGAGGA CAAGCAGTGGAAGCTGCAGCAGATCCAAGATGCCAGAAACCATGTGAGCCAAGCCATTTA CCTTCTCGCCAACCGGGACGAGAACTACCAGTTCAGGACAGGAGCAGAGGTCCTCAAGCT GATGGACGCAGTGATGCTGCAGCTGACCAGAGCCCGAAACCGGCTCACCACCCCGGCCAC CCTCACTCTGCCTGAGATCGCTGCCAGCGGCCTCACGCGGATGTTCGCCCCCGCCCTGCC CTCAGACCTGCTGGTCAATTTCTACATCAACCTCAACAAGCTCTGCCTCACCGTGTACCA GCTGCACGCCCTGCAGCCCAACTCCACCAAGAACTTCCGCCCGGCTGGAGGCGCTGTGCT CCACAGCCCCGGGGCCATGTTTGAGTGGGGCGCACAGCGTCTGGAGGTGAGCCACGTGCA CAAGGTGGAGTGTGTGATCCCCTGGCTCAATGACGCCCTGGTCTTCTTCACCGTCTCCCT GCAGCTCTGCCAGCAGCTCAAGGACAAGATCTCCGTGTTCTCCAGCTACTGGAGCTACAG GCCCTTCTGAGCGGAGCGCCCAAGACCCGGGCCCCTGGGCATGGCCCCCCGCCCAGGGGC CCCTGTCCCCCCACCGCCTCAGAGTGCCAGCCAGAGCCAGAGCTGTGCACCATGGGCTAT TTATTTCCCTCTTCACCCTGTCCTGCCTGTCACGTCTGCATGGATGGACCTGAACTCTGG GACGAAGGGATAGTGGCTTGCGGTTTGTTTTGGAATGGGGGGGGAGGGGTCAGGAAGGTG GGGCTGTGAGGTGGCCGAAGTCCCAGCCCTGCCCTCCGCAGAAGGCTGGAACCTTTGGAC TCAGGGTAGGGCTGGCCCTCCTCCCTCCCTCCCCTCCCTGGGGCAGCTGAGGACGTTGAG GGGAGCCACACACGCCCCGCCCCTGGAGGGCGTGGCATGGGTGGTGGCCCTAGGCTCTGT GTCAGGAGAGGGGGACAGAAGGCGCCCACCATGAGCTGTGATGCCCTTATCTGTGTTCAC TCCATGACCCTGCTGGGGCCTCTGAGGAATAAAGATCATCTGACTTTGCCTGGAGCCCTC GTGTCTGTCTGAGTGGGGACCTGGCCAGGGCTTCGTGATGGCCAGGAGCTGGCAGAGTAC CCAGGGACTGCGGACTGAGCCCCTGGCCTCCCAGGTGCCAAGGGGCCAAGTGGGATGGTC ACAGACAGTCACTGAGTGGCTACAGCAGGTCACCTAAGGTCTCCTGGGGACAGTCATTCC AGCTGAAGGCTGAGACCTGGGGGCATCTAGAAGAAGGGGGAGGGGGGGGCTGCCCTGTCC GTCCATCCCCCCACACACACAAGAGGCTCAGAACTCGCTCCAGACTCCGGCTTTGGCTGA ACGAGGCATGGTTCTTGCTGTCCGGCAGACAAAGACGAGGGGCAGGGCTCTCCGGCTAAG GTTCCAGGGCCAAGTTATCAACCCCCCAGGAGCGTTCCTTCTGAGGCCTGGAGGAGTGGC GGTCACAGCAGCTGCAGCAGCAGCAGTGGATGAAGACGAGCAGCAGCAGGAGCAGCACGA CGCCGAGGAAGATGAGGAAGATGACGAAGGCCCCGGTGTCCCACTGGGACTGGAACAGCT GGTGGCTCCTCAGCTTCCCCAGCACTTGCTGGCCTGTGGCGCTCAGCTCCTGCTCCAGGC CCGCCCTTGACAAAGCCATCTCAGCCGGACGGTCCTGGGTGCCACCTGCCCAGCCCCCCA GTGGGCCGCCTCAGAACCCTGGGCTCCTCTGGGACTGCCGAGTCCAGGCCTCCGACAGTC CAGCCCAGGCCCTGCCTCTCTTCTCGTCTCAACGACCCTGACCCTGGCCCGGGCAGCCCG TTCCCCCCACCAGCCCCAGCCCTGAGCCCCCACCTGCCTTGGAGCTTCCCGGCCAGGCAA GTCCCTGGTCCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 365-482, gnl|bosTau2|chr25 (4702243-4702125) | |
| 365-482, gnl|canFam2|chr6 (39663406-39663290) | |
| 365-482, gnl|danRer3|chr3 (32644673-32644569) | |
| 365-482, gnl|fr1|chrUn (247473107-247473004) | |
| 365-482, gnl|galGal2|chrUn (38942794-38942688) | |
| 365-482, gnl|hg17|chr16 (4789678-4789794) | |
| 365-482, gnl|Hg17|chr16 (4789804-4789684) | |
| 365-482, gnl|loxAfr1|scaffold_2336 (9296-9412) | |
| 365-482, gnl|mm7|chr16 (4684200-4684314) | |
| 365-482, gnl|Mm7|chr16 (4684320-4684204) | |
| 365-482, gnl|monDom2|scaffold_17 (42672561-42672449) | |
| 365-482, gnl|oryCun1|scaffold_149256 (640-756) | |
| 365-482, gnl|panTro1|chr18 (4739742-4739857) | |
| 365-482, gnl|rheMac2|chr20 (4965896-4966012) | |
| 365-482, gnl|rn3|chr10 (10686452-10686336) | |
| 365-482, gnl|tetNig1|chrUn_random (36585252-36585354) | |
| 365-482, gnl|xenTro1|scaffold_409 (314482-314372) | |
| 540-691, gnl|bosTau2|chr25 (4700519-4700368) | |
| 540-691, gnl|Hg17|chr16 (4788211-4788073) | |
| 540-691, gnl|Mm7|chr16 (4683548-4683401) | |
| 867-1632, gnl|bosTau2|chr25 (4699718-4698979) | |
| 867-1632, gnl|Hg17|chr16 (4787505-4786740) | |
| 867-1632, gnl|Mm7|chr16 (4682615-4681754) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 365-482, gnl|bosTau2|chr25 (4702243-4702125) | |
| 365-482, gnl|canFam2|chr6 (39663406-39663290) | |
| 365-482, gnl|danRer3|chr3 (32644673-32644569) | |
| 365-482, gnl|fr1|chrUn (247473107-247473004) | |
| 365-482, gnl|galGal2|chrUn (38942794-38942688) | |
| 365-482, gnl|hg17|chr16 (4789678-4789794) | |
| 365-482, gnl|Hg17|chr16 (4789804-4789684) | |
| 365-482, gnl|loxAfr1|scaffold_2336 (9296-9412) | |
| 365-482, gnl|mm7|chr16 (4684200-4684314) | |
| 365-482, gnl|Mm7|chr16 (4684320-4684204) | |
| 365-482, gnl|monDom2|scaffold_17 (42672561-42672449) | |
| 365-482, gnl|oryCun1|scaffold_149256 (640-756) | |
| 365-482, gnl|panTro1|chr18 (4739742-4739857) | |
| 365-482, gnl|rheMac2|chr20 (4965896-4966012) | |
| 365-482, gnl|rn3|chr10 (10686452-10686336) | |
| 365-482, gnl|tetNig1|chrUn_random (36585252-36585354) | |
| 365-482, gnl|xenTro1|scaffold_409 (314482-314372) | |
| 540-691, gnl|bosTau2|chr25 (4700519-4700368) | |
| 540-691, gnl|Hg17|chr16 (4788211-4788073) | |
| 540-691, gnl|Mm7|chr16 (4683548-4683401) | |
| 867-1632, gnl|bosTau2|chr25 (4699718-4698979) | |
| 867-1632, gnl|Hg17|chr16 (4787505-4786740) | |
| 867-1632, gnl|Mm7|chr16 (4682615-4681754) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| nje (0.99552) | |
| jej (0.791374) | |
| nco (0.646935) | |
| col (0.585023) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| pty (0.142714) | |
| pla (0.133672) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.99552) | |
| jej (0.791374) | |
| nco (0.646935) | |
| col (0.585023) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| pty (0.142714) | |
| pla (0.133672) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |