Non-Coding RNA Search

Ss1.1-Tes1-TES01E040055.5

Sequence:


               
               ACCACCATGGACCCCCACCCGCTCACCTGGGCTCTAGTGCTGCTGGGCCCGGCCCTGGCA
CTCTCCCGGGCCCCTGCGCCCGCCCAGGAGGCGCCAGAGAAGCTGTGCGGCCACCACTTT
GTGCGCGCGCTGGTGCGGCTGTGCGGAGGCCCGCGCTGGTCCCCTGAGGACGGGCGAGCT
GTGGCTGGAGGCGACCGTGAACTGCTACAGTGGCTGGAAGGACAACATCTCTTCCATGGG
CTGATGGCCAGTGGGGACCCCATGCTGGTATTGGCCCCACAGCCCCCGCCTCAGGCCTCT
GGCCATCACCACCACCGCCGGGCAGCTGCCACCAACCCAGCCCGCCACTGCTGCCTCAGT
GGCTGCACCCGGCAAGACTTGCTGACCCTCTGTCCCCACTGAAGCCTCCTGGGGAGTGGC
CATGGGGGAGGCTGAGATCCAGAGGGGGATCCAGTCTGGTGACCTCCTGATGCCACAGAG
CACCACGAAGCCCCATGTCTGGGGAACATAGTGATTACTTCCTAGGACAAGGCACTCACC
ACCTCCCCCAGACCATCTGTCCTCTGGGCGGGGCCAGCTGGGGAAAAAAATCAGACTCCC
CTCAAACCCTGCTTGGAGGACCCTTGGCTTTGCAGAAATACCAGACACTAAGGATCAATG
TCCTCACCTCAGAGGAGTTCAGGTGCCCTGCTCCCTGCATTTCATGACACCCCTTTTGTT
TTCTCAATAGTAAATAAATAAGATGCCTGCAGACTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCACCATGGACCCCCACCCGCTCACCTGGGCTCTAGTGCTGCTGGGCCCGGCCCTGGCA
CTCTCCCGGGCCCCTGCGCCCGCCCAGGAGGCGCCAGAGAAGCTGTGCGGCCACCACTTT
GTGCGCGCGCTGGTGCGGCTGTGCGGAGGCCCGCGCTGGTCCCCTGAGGACGGGCGAGCT
GTGGCTGGAGGCGACCGTGAACTGCTACAGTGGCTGGAAGGACAACATCTCTTCCATGGG
CTGATGGCCAGTGGGGACCCCATGCTGGTATTGGCCCCACAGCCCCCGCCTCAGGCCTCT
GGCCATCACCACCACCGCCGGGCAGCTGCCACCAACCCAGCCCGCCACTGCTGCCTCAGT
GGCTGCACCCGGCAAGACTTGCTGACCCTCTGTCCCCACTGAAGCCTCCTGGGGAGTGGC
CATGGGGGAGGCTGAGATCCAGAGGGGGATCCAGTCTGGTGACCTCCTGATGCCACAGAG
CACCACGAAGCCCCATGTCTGGGGAACATAGTGATTACTTCCTAGGACAAGGCACTCACC
ACCTCCCCCAGACCATCTGTCCTCTGGGCGGGGCCAGCTGGGGAAAAAAATCAGACTCCC
CTCAAACCCTGCTTGGAGGACCCTTGGCTTTGCAGAAATACCAGACACTAAGGATCAATG
TCCTCACCTCAGAGGAGTTCAGGTGCCCTGCTCCCTGCATTTCATGACACCCCTTTTGTT
TTCTCAATAGTAAATAAATAAGATGCCTGCAGACTAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               INSL3_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               INSL3_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               197-395, - strand, RNAz p=0.907097
               

               
               436-627, - strand, RNAz p=0.987945

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-395, - strand, RNAz p=0.907097
               

               
               436-627, - strand, RNAz p=0.987945

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               197-677, gnl|bosTau2|chr7 (4581414-4581887)
               

               
               197-677, gnl|Hg17|chr19 (17788868-17788447)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               197-677, gnl|bosTau2|chr7 (4581414-4581887)
               

               
               197-677, gnl|Hg17|chr19 (17788868-17788447)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cov (0.396458)
               

               
               cte (0.29274)
               

               
               tes (0.207814)
               

               
               che (0.136314)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               cte (0.29274)
               

               
               tes (0.207814)
               

               
               che (0.136314)

	197-395, - strand, RNAz p=0.907097
	436-627, - strand, RNAz p=0.987945

	197-677, gnl\|bosTau2\|chr7 (4581414-4581887)
	197-677, gnl\|Hg17\|chr19 (17788868-17788447)