Non-Coding RNA Search

Ss1.1-Tes1-TES01E070006.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTTCCAGTGCTTTTTATGTAG
CATTCGAAGCACTTTAAACACTCCCTCCCAATCCCTGGAAGGAGGCGGCCTGACAGGAAG
GCCAGGCCGGGCTCGGCCCACTGGAGCCCCTTCGGCCTCCTAAGCCACATCCCCTCCGGC
CCAAGGTCACCGGGAGACCCCTACAAGTTCTGGTCCTCGTCCTGGTCGGCCTCCAGCACC
GCCACGTGACTGTAGGACTTCCAGGCCTGCAGGTTACAGCTCTTGAGGATGGTTCCCAGC
TGCTTCCCAGGTCCCACTTCAAAAGTCTTGGGGAAGTCGGTGCCTTTCCTCCTCTCGTAT
ATGGCGTGCATCGTCTGCTCCCACTTCACTGGGGAGACCACCTGCTGGACCAGCAGCTGC
CGGATGTGTTTGGGGTGCATGTATTTATTCCCAGTGACGTTGGAATGGACAGAAACCAGA
GGCTTCTTGAGATCAATGTCTTTTAGAACGTGTGCCAGGGGCTCCAGGGCTGGCTCCATG
AGGCGGGTGTGGAAGGCGCCGCTGACGGGCACCATCTTGGTGCGTCTGAAGTGATACTTG
TAGGAATTCTTCCGGAGGTAGTGCAGAGCCTCCAGGTGTCCTGAGATCACCCTGCAGTCG
GGGAAGAGGAAGTTGGCCACCTCGCACACCGGGTTCTCTATGCCCAAAGTCCTGCAGTGC
TCCCGGGCTTCCCGACAGGCGACGGTGAACTTGGACTGGGGCTGGCCAAGGACGGACAAC
ATCCCGCTGGGGACAGCTTCCGAGGCTTCCTGCATGGCCTCCGCTCGGATCTTCACTGCA
TACAAGCCTTCACAAAATTCCATGGCTCCAGCAAACACTAGGGCTGCAAATTCTCCCACA
CTGAATCCAGCAGCAGCAACACAGTTCTCAATAACCGCGGGCTGCAGGTGATGCAGTTTC
TCCACGGCAGCCAGCGAAGCCACGAAGACGGCGGGCTGGCAGTGCACGGTGCGGTCCAGG
TCCTCCTGAGGCCCATGCAGGCTCAGCTCCAGCAGGTCGTAACCCAGCACGCGGCGGGCG
GCGGCGTAGAGCTCGCGGACGCGCGGGTAGCGGAGCAGACCGCGGCCCATGCCCACTACC
TGGCTGCCCTGGCCCGGGAAGAGCAGCACCGAGCACTGGCCCGGCAACCGCCGCGCCGCC
GCCACCCGGGGCCCTTCCTCCCCCGCTGCCGCATCTCGCAGCAGCTCCGCCACGTCCACC
GCGCCCGGCGGAGGCAGCGGGAAGTTCGAGGTGCTGCGGTGACCTCCCGCGCGCCAGCCA
CAGGCCCACGCAGCCCGCGCAACCCGGACGCTCATGGTGAGAAAATTGCCCCACGCACGT
TACCGGGGCGACCGAGGCCCGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTTCCAGTGCTTTTTATGTAG
CATTCGAAGCACTTTAAACACTCCCTCCCAATCCCTGGAAGGAGGCGGCCTGACAGGAAG
GCCAGGCCGGGCTCGGCCCACTGGAGCCCCTTCGGCCTCCTAAGCCACATCCCCTCCGGC
CCAAGGTCACCGGGAGACCCCTACAAGTTCTGGTCCTCGTCCTGGTCGGCCTCCAGCACC
GCCACGTGACTGTAGGACTTCCAGGCCTGCAGGTTACAGCTCTTGAGGATGGTTCCCAGC
TGCTTCCCAGGTCCCACTTCAAAAGTCTTGGGGAAGTCGGTGCCTTTCCTCCTCTCGTAT
ATGGCGTGCATCGTCTGCTCCCACTTCACTGGGGAGACCACCTGCTGGACCAGCAGCTGC
CGGATGTGTTTGGGGTGCATGTATTTATTCCCAGTGACGTTGGAATGGACAGAAACCAGA
GGCTTCTTGAGATCAATGTCTTTTAGAACGTGTGCCAGGGGCTCCAGGGCTGGCTCCATG
AGGCGGGTGTGGAAGGCGCCGCTGACGGGCACCATCTTGGTGCGTCTGAAGTGATACTTG
TAGGAATTCTTCCGGAGGTAGTGCAGAGCCTCCAGGTGTCCTGAGATCACCCTGCAGTCG
GGGAAGAGGAAGTTGGCCACCTCGCACACCGGGTTCTCTATGCCCAAAGTCCTGCAGTGC
TCCCGGGCTTCCCGACAGGCGACGGTGAACTTGGACTGGGGCTGGCCAAGGACGGACAAC
ATCCCGCTGGGGACAGCTTCCGAGGCTTCCTGCATGGCCTCCGCTCGGATCTTCACTGCA
TACAAGCCTTCACAAAATTCCATGGCTCCAGCAAACACTAGGGCTGCAAATTCTCCCACA
CTGAATCCAGCAGCAGCAACACAGTTCTCAATAACCGCGGGCTGCAGGTGATGCAGTTTC
TCCACGGCAGCCAGCGAAGCCACGAAGACGGCGGGCTGGCAGTGCACGGTGCGGTCCAGG
TCCTCCTGAGGCCCATGCAGGCTCAGCTCCAGCAGGTCGTAACCCAGCACGCGGCGGGCG
GCGGCGTAGAGCTCGCGGACGCGCGGGTAGCGGAGCAGACCGCGGCCCATGCCCACTACC
TGGCTGCCCTGGCCCGGGAAGAGCAGCACCGAGCACTGGCCCGGCAACCGCCGCGCCGCC
GCCACCCGGGGCCCTTCCTCCCCCGCTGCCGCATCTCGCAGCAGCTCCGCCACGTCCACC
GCGCCCGGCGGAGGCAGCGGGAAGTTCGAGGTGCTGCGGTGACCTCCCGCGCGCCAGCCA
CAGGCCCACGCAGCCCGCGCAACCCGGACGCTCATGGTGAGAAAATTGCCCCACGCACGT
TACCGGGGCGACCGAGGCCCGACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51574069|gb|AAH42195.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51574069|gb|AAH42195.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               37-151, - strand, RNAz p=0.795013
               

               
               512-631, + strand, RNAz p=0.526952

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-151, - strand, RNAz p=0.795013
               

               
               512-631, + strand, RNAz p=0.526952

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014507, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014507, -

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               37-631, gnl|bosTau2|chr5 (71789726-71790311)
               

               
               37-631, gnl|Hg17|chr22 (41853387-41853992)
               


               
               934-1404, gnl|bosTau2|chr5 (71800202-71800684)
               

               
               934-1404, gnl|Hg17|chr22 (41863428-41863900)
               

               
               934-1404, gnl|Mm7|chr15 (83637590-83638055)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-631, gnl|bosTau2|chr5 (71789726-71790311)
               

               
               37-631, gnl|Hg17|chr22 (41853387-41853992)
               


               
               934-1404, gnl|bosTau2|chr5 (71800202-71800684)
               

               
               934-1404, gnl|Hg17|chr22 (41863428-41863900)
               

               
               934-1404, gnl|Mm7|chr15 (83637590-83638055)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               amn (0.417711)
               

               
               fce (0.271592)
               

               
               cki (0.165235)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               fce (0.271592)
               

               
               cki (0.165235)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	37-151, - strand, RNAz p=0.795013
	512-631, + strand, RNAz p=0.526952

	37-631, gnl\|bosTau2\|chr5 (71789726-71790311)
	37-631, gnl\|Hg17\|chr22 (41853387-41853992)

	934-1404, gnl\|bosTau2\|chr5 (71800202-71800684)
	934-1404, gnl\|Hg17\|chr22 (41863428-41863900)
	934-1404, gnl\|Mm7\|chr15 (83637590-83638055)

	amn (0.417711)
	fce (0.271592)
	cki (0.165235)
	hlv (0.139256)
	che (0.136314)
	clu (0.119646)
	cty (0.10408)