Non-Coding RNA Search

Ss1.1-Tes1-TES01E070024.5

Sequence:


               
               GCGCGTAGGAGTCACAGCCATGGCGGCCTCGCTTCTGCTGCGGCAAGGACGGGCCAGGGC
GCTGAAGACGGTGCTCCTAGAAGGAGGAGTATTTCGCGGACTCGCTCCTGCAGTTTCTCT
CTCTGCAGAATCAGGAAGGAATGAAAAGGAACGGCCACCGAATCCTAAGAAGCAAAGTCC
ACCAAAAAATGTAGTGGCGGCACAGGAGGGGGGCACACCGCTGGCCACCCCGGCAGCCCC
TGAACTGTCCCAGCAGCTGTCCTCACCCACGTCCCCCCCAGCGGCTGCGAGGCCAGGTGG
GACGCTCGCTCCCCCCAACCCCGGTGACAGCACACTGTTCACAGACCGAGGGCGTCCCAG
ATTCCCATCGAGAAAGACTTTGGTCGAGTTTCCTCGGAAAGTCCTGTCTCCGTTCAGCCA
GCAGGGCTCGGATTCAGCAGCCACGCAGGCGAGCAGGGGCCGGGCGGGGGACGCGACCTC
GTCCTCCTCGTCCTCCAGCTCCTCGGACTCCGAGTCCGACGACGAAGAGGAGGGTGACGG
CTCGGAAGCTGTTCGTCCAGTTAAGAGCACAAGCCCGGGAGGGTCTCCCAAAGCAGAGGC
CCCCCGCTCCTTGGCAGGTGGAGCCCCCCAAACAGGCGTCCCAGCAGAAGCGAGGCCAGG
CCCCCAGCAGCCACATCCAGACCTCGCCGCTGCAGAGAGGCCCCGCCAGGCCAAGGGGAA
GGGGGGCTCCGGGGCACCGGAGGACAGAAGGGCCCCCAAAGCCGCAGCACCCGGGTCACG
AGGAGGCCCAGGGGCCGCCAGGCAAAGTGAGACGCCATCGCAGAAAATACCCAGATCAGA
GGAGGCAGATGCCGAAAGCCAGAAGCCACCTGAGGTTAAAACAAGCTTACCTGACCCCAC
AAAATCAGGATTATCCACAGCCCCCAGGGGCGGCCCAGCGTCCGCGGAGCCGGCAGCAAC
CCCGGCAGGGGCCCGGCTGCCGGCCACTCCTCTCGAGACTGGAGAGCGCCCTCTTGGGGA
GCGGGTCCCGGAGCCTGGCGGGCAGGTGGCCTCTCCCCTCTTCAGCAGAGCGCCCTTGGG
AGGGCAGGCGGCAGAGGGCGTCGCGGAGGCCAAGGGAGAGCTTCTGGAAGGTCGGCCCCT
TGTACAGGGTCCGAAGGCCGTCCCCGACGGGCAGGATGAGGGCGCTGAGAAGAAGGCGCT
GAGGCCCGAGGAGGAGGCTGGCATTGAAAAGGAACGGCCACCGAATCCTAAGAAGCAAAG
TCCACCAAAAAAGCCCACGCCAGCCGCCGCGGCCGCCGAGCCATTCGACAACAGCACGTA
CAGGAACCTGCAGCATCATGAGTACAGCACGTACACCTTCCTCGACCTGAACGTGGAGCT
CTCCAAATTCCGCATGCCTCAGCCCTCCTCGGGGCGGCAGTCCCCCCGCCACTGAGCGCC
CGGCCGAGAGTCTCCTCTCCTGCCGTCCTGCATCCTTGCCTGGGAAAATAAAATCTGCAC
AGCGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCGTAGGAGTCACAGCCATGGCGGCCTCGCTTCTGCTGCGGCAAGGACGGGCCAGGGC
GCTGAAGACGGTGCTCCTAGAAGGAGGAGTATTTCGCGGACTCGCTCCTGCAGTTTCTCT
CTCTGCAGAATCAGGAAGGAATGAAAAGGAACGGCCACCGAATCCTAAGAAGCAAAGTCC
ACCAAAAAATGTAGTGGCGGCACAGGAGGGGGGCACACCGCTGGCCACCCCGGCAGCCCC
TGAACTGTCCCAGCAGCTGTCCTCACCCACGTCCCCCCCAGCGGCTGCGAGGCCAGGTGG
GACGCTCGCTCCCCCCAACCCCGGTGACAGCACACTGTTCACAGACCGAGGGCGTCCCAG
ATTCCCATCGAGAAAGACTTTGGTCGAGTTTCCTCGGAAAGTCCTGTCTCCGTTCAGCCA
GCAGGGCTCGGATTCAGCAGCCACGCAGGCGAGCAGGGGCCGGGCGGGGGACGCGACCTC
GTCCTCCTCGTCCTCCAGCTCCTCGGACTCCGAGTCCGACGACGAAGAGGAGGGTGACGG
CTCGGAAGCTGTTCGTCCAGTTAAGAGCACAAGCCCGGGAGGGTCTCCCAAAGCAGAGGC
CCCCCGCTCCTTGGCAGGTGGAGCCCCCCAAACAGGCGTCCCAGCAGAAGCGAGGCCAGG
CCCCCAGCAGCCACATCCAGACCTCGCCGCTGCAGAGAGGCCCCGCCAGGCCAAGGGGAA
GGGGGGCTCCGGGGCACCGGAGGACAGAAGGGCCCCCAAAGCCGCAGCACCCGGGTCACG
AGGAGGCCCAGGGGCCGCCAGGCAAAGTGAGACGCCATCGCAGAAAATACCCAGATCAGA
GGAGGCAGATGCCGAAAGCCAGAAGCCACCTGAGGTTAAAACAAGCTTACCTGACCCCAC
AAAATCAGGATTATCCACAGCCCCCAGGGGCGGCCCAGCGTCCGCGGAGCCGGCAGCAAC
CCCGGCAGGGGCCCGGCTGCCGGCCACTCCTCTCGAGACTGGAGAGCGCCCTCTTGGGGA
GCGGGTCCCGGAGCCTGGCGGGCAGGTGGCCTCTCCCCTCTTCAGCAGAGCGCCCTTGGG
AGGGCAGGCGGCAGAGGGCGTCGCGGAGGCCAAGGGAGAGCTTCTGGAAGGTCGGCCCCT
TGTACAGGGTCCGAAGGCCGTCCCCGACGGGCAGGATGAGGGCGCTGAGAAGAAGGCGCT
GAGGCCCGAGGAGGAGGCTGGCATTGAAAAGGAACGGCCACCGAATCCTAAGAAGCAAAG
TCCACCAAAAAAGCCCACGCCAGCCGCCGCGGCCGCCGAGCCATTCGACAACAGCACGTA
CAGGAACCTGCAGCATCATGAGTACAGCACGTACACCTTCCTCGACCTGAACGTGGAGCT
CTCCAAATTCCGCATGCCTCAGCCCTCCTCGGGGCGGCAGTCCCCCCGCCACTGAGCGCC
CGGCCGAGAGTCTCCTCTCCTGCCGTCCTGCATCCTTGCCTGGGAAAATAAAATCTGCAC
AGCGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|244273|gb|AAB21272.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|244273|gb|AAB21272.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               73-188, - strand, RNAz p=0.973095

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-188, - strand, RNAz p=0.973095

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               9-188, gnl|bosTau2|chr11 (40073735-40073555)
               


               
               189-1136, gnl|bosTau2|chr28 (9407749-9406793)
               

               
               189-1136, gnl|Hg17|chr21 (43196361-43197314)
               

               
               189-1136, gnl|Mm7|chr17 (29718232-29719170)
               


               
               1225-1543, gnl|bosTau2|chr11 (40073603-40073286)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-188, gnl|bosTau2|chr11 (40073735-40073555)
               


               
               189-1136, gnl|bosTau2|chr28 (9407749-9406793)
               

               
               189-1136, gnl|Hg17|chr21 (43196361-43197314)
               

               
               189-1136, gnl|Mm7|chr17 (29718232-29719170)
               


               
               1225-1543, gnl|bosTau2|chr11 (40073603-40073286)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               ece (1.60514)
               

               
               clu (1.07681)
               

               
               pla (0.802032)
               

               
               nms (0.427716)
               

               
               mas (0.42061)
               

               
               nep (0.36785)
               

               
               ton (0.351)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (1.60514)
               

               
               clu (1.07681)
               

               
               pla (0.802032)
               

               
               nms (0.427716)
               

               
               mas (0.42061)
               

               
               nep (0.36785)
               

               
               ton (0.351)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	9-188, gnl\|bosTau2\|chr11 (40073735-40073555)

	189-1136, gnl\|bosTau2\|chr28 (9407749-9406793)
	189-1136, gnl\|Hg17\|chr21 (43196361-43197314)
	189-1136, gnl\|Mm7\|chr17 (29718232-29719170)

	1225-1543, gnl\|bosTau2\|chr11 (40073603-40073286)

	ece (1.60514)
	clu (1.07681)
	pla (0.802032)
	nms (0.427716)
	mas (0.42061)
	nep (0.36785)
	ton (0.351)
	hlv (0.278513)
	fce (0.271592)
	cov (0.264306)
	duo (0.172801)
	eye (0.170503)
	cag (0.151194)
	hyp (0.142837)
	lnt (0.142308)
	nca (0.136874)
	che (0.136314)
	ute (0.132784)
	ese (0.126502)
	ebs (0.118301)
	jca (0.11396)
	eje (0.0988338)