Ss1.1-Tes1-TES01E080052.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCGGGATTGCCTGCCCGCTCGCGCAGCGCCGCACGCAGTTCCGCTCCTCTCGGCCCCC ACATAGTTCGCTCAGGACTCCAGGGTCCCCAGGGGCCGGATTCCGGGCCCCGCTCCGGGG CTCCCCTCCCCCACGGCAGTGTGGCGGGGTCGGATTAGCTCATCCCCGCAGGGAGGTGGG AGAGCGCGCGGCCGCCCCGCAGTATGAGGTGGTGCCGGCGGCTCGGGGCCGTGGCGCGGC CGCTGCGGCGCCGGCTGCTGGGGGGGCGCTGAGGGAGCCCTGGGGGCGGCGCAGCCGGGC CTCCGGGCTTTTCTTCTCCAGCCGGGAGGACGCGGCTGGGATACGAAGACCTTGTGTGGA CAGTAATGACCTCACGTTTCCGATTGCCTGCTGGCAGAACCTACAATGTACGAGCATCAG AGTTGGCCCGAGACAGACAGCATACAGAGGTGGTTTGCAACATCCTTCTTCTGGATAATA CTGTACAAGCTTTCAAAGTTAATAAACAGGAACAGGGGCAAGTTCTGTTGGATGTAGTCT TCAAGCATCTTGATTTGACTGAGCGTGACTATTTTGGTTTACAGTTGGCTGACGATTCCT CAGATAACCCAAGGTGGCTGGATCCAAACAAACCAATAAGGAAGCAGCTAAAGAGAGGAT CTCCTTACAGTTTGAACTTTAGAGTCAAATTTTTTGTAAGTGACCCCAACAAGTTACAAG AAGAATATACAAGGTACCAATATTTTTTGCAAATCAAACAAGACATTCTTACTGGAAGAT TGCCCTGTCCTTATAATACTGCTGCTCTTTTGGCTTCATTTGCTGTTCAGTCTGAACTTG GAGACTACAATCAAACAGAAAATTTGCCAGGCTACCTCTCAGATTATTCTTTCATTCCTA ATCAGCCTCAAGATTTTGAAAAAGAAATTGCAAAATTACATCAGCAACATACAGGCTTAT CTCCTGCAGAAGCAGAATTTAATTACCTGAACACAGCACGTACCTTAGAACTCTATGGAG TTGAATTCCACTATGCAAGGGATCAAAGTAACAATGAAATTATGATTGGAGTAATGTCAG GAGGAATTCTGATTTACATGAACAGAGAACGAATGAATAGTTTTCCATGGTTGAAGATTG TAAAAATTTCTTTTAAGTGCAAACAGTTTTTTATTCAACTTAGAAAAGAATTGCATGAAT CTAGAGAAACATTATTGGGATTTAATATGGTGAATTACAGAGCATGTAAAAATTTGTGGA AAGCATGTGTAGAACATCACACATTCTTCCGTTTGGACAGACCACTTCCACCTCAAAAGA ATTTTTTTGCACATTATTTTACATTAGGTTCAAAATTCCGGTACTGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCGGGATTGCCTGCCCGCTCGCGCAGCGCCGCACGCAGTTCCGCTCCTCTCGGCCCCC ACATAGTTCGCTCAGGACTCCAGGGTCCCCAGGGGCCGGATTCCGGGCCCCGCTCCGGGG CTCCCCTCCCCCACGGCAGTGTGGCGGGGTCGGATTAGCTCATCCCCGCAGGGAGGTGGG AGAGCGCGCGGCCGCCCCGCAGTATGAGGTGGTGCCGGCGGCTCGGGGCCGTGGCGCGGC CGCTGCGGCGCCGGCTGCTGGGGGGGCGCTGAGGGAGCCCTGGGGGCGGCGCAGCCGGGC CTCCGGGCTTTTCTTCTCCAGCCGGGAGGACGCGGCTGGGATACGAAGACCTTGTGTGGA CAGTAATGACCTCACGTTTCCGATTGCCTGCTGGCAGAACCTACAATGTACGAGCATCAG AGTTGGCCCGAGACAGACAGCATACAGAGGTGGTTTGCAACATCCTTCTTCTGGATAATA CTGTACAAGCTTTCAAAGTTAATAAACAGGAACAGGGGCAAGTTCTGTTGGATGTAGTCT TCAAGCATCTTGATTTGACTGAGCGTGACTATTTTGGTTTACAGTTGGCTGACGATTCCT CAGATAACCCAAGGTGGCTGGATCCAAACAAACCAATAAGGAAGCAGCTAAAGAGAGGAT CTCCTTACAGTTTGAACTTTAGAGTCAAATTTTTTGTAAGTGACCCCAACAAGTTACAAG AAGAATATACAAGGTACCAATATTTTTTGCAAATCAAACAAGACATTCTTACTGGAAGAT TGCCCTGTCCTTATAATACTGCTGCTCTTTTGGCTTCATTTGCTGTTCAGTCTGAACTTG GAGACTACAATCAAACAGAAAATTTGCCAGGCTACCTCTCAGATTATTCTTTCATTCCTA ATCAGCCTCAAGATTTTGAAAAAGAAATTGCAAAATTACATCAGCAACATACAGGCTTAT CTCCTGCAGAAGCAGAATTTAATTACCTGAACACAGCACGTACCTTAGAACTCTATGGAG TTGAATTCCACTATGCAAGGGATCAAAGTAACAATGAAATTATGATTGGAGTAATGTCAG GAGGAATTCTGATTTACATGAACAGAGAACGAATGAATAGTTTTCCATGGTTGAAGATTG TAAAAATTTCTTTTAAGTGCAAACAGTTTTTTATTCAACTTAGAAAAGAATTGCATGAAT CTAGAGAAACATTATTGGGATTTAATATGGTGAATTACAGAGCATGTAAAAATTTGTGGA AAGCATGTGTAGAACATCACACATTCTTCCGTTTGGACAGACCACTTCCACCTCAAAAGA ATTTTTTTGCACATTATTTTACATTAGGTTCAAAATTCCGGTACTGGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 105 entry(ies) | More info |
| Aligned organism(s): 105 entry(ies) | Help | Less info |
| 11-348, gnl|bosTau2|chr2 (43987342-43987010) | |
| 11-348, gnl|Hg17|chr2 (120233734-120234190) | |
| 11-348, gnl|Mm7|chr1 (119697860-119697421) | |
| 504-611, gnl|bosTau2|chr2 (43915184-43915077) | |
| 504-611, gnl|canFam2|chr19 (33219673-33219538) | |
| 504-611, gnl|danRer3|chr9 (27663552-27663387) | |
| 504-611, gnl|dasNov1|scaffold_32867 (6647-6512) | |
| 504-611, gnl|echTel1|scaffold_16133 (4032-4167) | |
| 504-611, gnl|fr1|chrUn (147445946-147446082) | |
| 504-611, gnl|galGal2|chr7 (26072073-26072208) | |
| 504-611, gnl|hg17|chr2 (120336326-120336465) | |
| 504-611, gnl|Hg17|chr2 (120336342-120336449) | |
| 504-611, gnl|loxAfr1|scaffold_40346 (1142-1267) | |
| 504-611, gnl|mm7|chr1 (119644122-119643987) | |
| 504-611, gnl|Mm7|chr1 (119644108-119644001) | |
| 504-611, gnl|monDom2|scaffold_2 (9629504-9629374) | |
| 504-611, gnl|oryCun1|scaffold_119094 (1608-1743) | |
| 504-611, gnl|panTro1|chr13 (6354518-6354657) | |
| 504-611, gnl|rheMac2|chr13 (126062852-126062985) | |
| 504-611, gnl|rn3|chr13 (32562330-32562195) | |
| 504-611, gnl|tetNig1|chr2 (15686261-15686132) | |
| 832-951, gnl|bosTau2|chr2 (43900410-43900291) | |
| 832-951, gnl|canFam2|chr19 (33198626-33198497) | |
| 832-951, gnl|danRer3|chr9 (27654314-27654130) | |
| 832-951, gnl|dasNov1|scaffold_139551 (3277-3148) | |
| 832-951, gnl|fr1|chrUn (147449794-147449926) | |
| 832-951, gnl|galGal2|chr7 (26079165-26079294) | |
| 832-951, gnl|hg17|chr2 (120356304-120356433) | |
| 832-951, gnl|Hg17|chr2 (120356309-120356428) | |
| 832-951, gnl|loxAfr1|scaffold_48377 (3857-3986) | |
| 832-951, gnl|mm7|chr1 (119625677-119625548) | |
| 832-951, gnl|Mm7|chr1 (119625670-119625551) | |
| 832-951, gnl|monDom2|scaffold_2 (9582166-9582037) | |
| 832-951, gnl|oryCun1|scaffold_153867 (614-485) | |
| 832-951, gnl|panTro1|chr13 (6374423-6374552) | |
| 832-951, gnl|rheMac2|chr13 (126082327-126082456) | |
| 832-951, gnl|rn3|chr13 (32538531-32538402) | |
| 832-951, gnl|tetNig1|chr2 (15682442-15682316) | |
| 953-1072, gnl|bosTau2|chr2 (43897472-43897355) | |
| 953-1072, gnl|canFam2|chr19 (33194142-33194056) | |
| 953-1072, gnl|canFam2|chr19 (33194165-33194054) | |
| 953-1072, gnl|danRer3|chr9 (27651374-27651272) | |
| 953-1072, gnl|danRer3|chr9 (27651385-27651272) | |
| 953-1072, gnl|dasNov1|scaffold_147515 (1870-1782) | |
| 953-1072, gnl|dasNov1|scaffold_147515 (1874-1782) | |
| 953-1072, gnl|echTel1|scaffold_293482 (4624-4537) | |
| 953-1072, gnl|echTel1|scaffold_293482 (4645-4536) | |
| 953-1072, gnl|fr1|chrUn (147450207-147450294) | |
| 953-1072, gnl|fr1|chrUn (147450204-147450294) | |
| 953-1072, gnl|galGal2|chr7 (26080258-26080372) | |
| 953-1072, gnl|hg17|chr2 (120359576-120359690) | |
| 953-1072, gnl|Hg17|chr2 (120359601-120359723) | |
| 953-1072, gnl|hg17|chr8 (6563791-6563879) | |
| 953-1072, gnl|loxAfr1|scaffold_48377 (6515-6602) | |
| 953-1072, gnl|loxAfr1|scaffold_48377 (6489-6603) | |
| 953-1072, gnl|mm7|chr1 (119603949-119603871) | |
| 953-1072, gnl|mm7|chr1 (119603985-119603871) | |
| 953-1072, gnl|Mm7|chr1 (119603958-119603840) | |
| 953-1072, gnl|monDom2|scaffold_2 (9577857-9577743) | |
| 953-1072, gnl|oryCun1|scaffold_210071 (40640-40724) | |
| 953-1072, gnl|oryCun1|scaffold_210071 (40614-40728) | |
| 953-1072, gnl|panTro1|chr13 (6377688-6377802) | |
| 953-1072, gnl|panTro1|chr7 (6895711-6895799) | |
| 953-1072, gnl|rheMac2|chr13 (126085622-126085733) | |
| 953-1072, gnl|rheMac2|chr8 (6802579-6802667) | |
| 953-1072, gnl|rn3|chr13 (32528958-32528880) | |
| 953-1072, gnl|rn3|chr13 (32528994-32528880) | |
| 953-1072, gnl|tetNig1|chr2 (15681964-15681877) | |
| 953-1072, gnl|tetNig1|chr2 (15681967-15681877) | |
| 953-1072, gnl|xenTro1|scaffold_398 (529638-529552) | |
| 1193-1368, gnl|bosTau2|chr2 (43871260-43871085) | |
| 1193-1368, gnl|canFam2|chr19 (33160316-33160150) | |
| 1193-1368, gnl|canFam2|chr19 (33160333-33160138) | |
| 1193-1368, gnl|danRer3|chr9 (27646114-27645948) | |
| 1193-1368, gnl|danRer3|chr9 (27646125-27645936) | |
| 1193-1368, gnl|dasNov1|scaffold_147515 (1621-1470) | |
| 1193-1368, gnl|dasNov1|scaffold_24859 (210-405) | |
| 1193-1368, gnl|echTel1|scaffold_228460 (2976-2810) | |
| 1193-1368, gnl|echTel1|scaffold_228460 (2993-2798) | |
| 1193-1368, gnl|fr1|chrUn (147453492-147453646) | |
| 1193-1368, gnl|fr1|chrUn (147453472-147453659) | |
| 1193-1368, gnl|galGal2|chr7 (26094291-26094457) | |
| 1193-1368, gnl|galGal2|chr7 (26094277-26094469) | |
| 1193-1368, gnl|hg17|chr2 (120393858-120394053) | |
| 1193-1368, gnl|Hg17|chr2 (120393874-120394049) | |
| 1193-1368, gnl|hg17|chr8 (6564028-6564196) | |
| 1193-1368, gnl|loxAfr1|scaffold_28757 (23528-23694) | |
| 1193-1368, gnl|loxAfr1|scaffold_28757 (23511-23706) | |
| 1193-1368, gnl|mm7|chr1 (119582550-119582391) | |
| 1193-1368, gnl|mm7|chr1 (119582574-119582379) | |
| 1193-1368, gnl|Mm7|chr1 (119582556-119582381) | |
| 1193-1368, gnl|monDom2|scaffold_2 (9544930-9544762) | |
| 1193-1368, gnl|monDom2|scaffold_2 (9544955-9544752) | |
| 1193-1368, gnl|oryCun1|scaffold_147748 (9308-9149) | |
| 1193-1368, gnl|oryCun1|scaffold_147748 (9332-9137) | |
| 1193-1368, gnl|panTro1|chr13 (6412126-6412321) | |
| 1193-1368, gnl|panTro1|chr7 (6895948-6896116) | |
| 1193-1368, gnl|rheMac2|chr13 (126119379-126119574) | |
| 1193-1368, gnl|rheMac2|chr8 (6802817-6802985) | |
| 1193-1368, gnl|rn3|chr13 (32504057-32503898) | |
| 1193-1368, gnl|rn3|chr13 (32504081-32503886) | |
| 1193-1368, gnl|tetNig1|chr2 (15679005-15678851) | |
| 1193-1368, gnl|tetNig1|chr2 (15679018-15678838) | |
| 1193-1368, gnl|xenTro1|scaffold_398 (524925-524752) | |
| 1193-1368, gnl|xenTro1|scaffold_398 (524930-524747) |
| Aligned organism(s): 105 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-348, gnl|bosTau2|chr2 (43987342-43987010) | |
| 11-348, gnl|Hg17|chr2 (120233734-120234190) | |
| 11-348, gnl|Mm7|chr1 (119697860-119697421) | |
| 504-611, gnl|bosTau2|chr2 (43915184-43915077) | |
| 504-611, gnl|canFam2|chr19 (33219673-33219538) | |
| 504-611, gnl|danRer3|chr9 (27663552-27663387) | |
| 504-611, gnl|dasNov1|scaffold_32867 (6647-6512) | |
| 504-611, gnl|echTel1|scaffold_16133 (4032-4167) | |
| 504-611, gnl|fr1|chrUn (147445946-147446082) | |
| 504-611, gnl|galGal2|chr7 (26072073-26072208) | |
| 504-611, gnl|hg17|chr2 (120336326-120336465) | |
| 504-611, gnl|Hg17|chr2 (120336342-120336449) | |
| 504-611, gnl|loxAfr1|scaffold_40346 (1142-1267) | |
| 504-611, gnl|mm7|chr1 (119644122-119643987) | |
| 504-611, gnl|Mm7|chr1 (119644108-119644001) | |
| 504-611, gnl|monDom2|scaffold_2 (9629504-9629374) | |
| 504-611, gnl|oryCun1|scaffold_119094 (1608-1743) | |
| 504-611, gnl|panTro1|chr13 (6354518-6354657) | |
| 504-611, gnl|rheMac2|chr13 (126062852-126062985) | |
| 504-611, gnl|rn3|chr13 (32562330-32562195) | |
| 504-611, gnl|tetNig1|chr2 (15686261-15686132) | |
| 832-951, gnl|bosTau2|chr2 (43900410-43900291) | |
| 832-951, gnl|canFam2|chr19 (33198626-33198497) | |
| 832-951, gnl|danRer3|chr9 (27654314-27654130) | |
| 832-951, gnl|dasNov1|scaffold_139551 (3277-3148) | |
| 832-951, gnl|fr1|chrUn (147449794-147449926) | |
| 832-951, gnl|galGal2|chr7 (26079165-26079294) | |
| 832-951, gnl|hg17|chr2 (120356304-120356433) | |
| 832-951, gnl|Hg17|chr2 (120356309-120356428) | |
| 832-951, gnl|loxAfr1|scaffold_48377 (3857-3986) | |
| 832-951, gnl|mm7|chr1 (119625677-119625548) | |
| 832-951, gnl|Mm7|chr1 (119625670-119625551) | |
| 832-951, gnl|monDom2|scaffold_2 (9582166-9582037) | |
| 832-951, gnl|oryCun1|scaffold_153867 (614-485) | |
| 832-951, gnl|panTro1|chr13 (6374423-6374552) | |
| 832-951, gnl|rheMac2|chr13 (126082327-126082456) | |
| 832-951, gnl|rn3|chr13 (32538531-32538402) | |
| 832-951, gnl|tetNig1|chr2 (15682442-15682316) | |
| 953-1072, gnl|bosTau2|chr2 (43897472-43897355) | |
| 953-1072, gnl|canFam2|chr19 (33194142-33194056) | |
| 953-1072, gnl|canFam2|chr19 (33194165-33194054) | |
| 953-1072, gnl|danRer3|chr9 (27651374-27651272) | |
| 953-1072, gnl|danRer3|chr9 (27651385-27651272) | |
| 953-1072, gnl|dasNov1|scaffold_147515 (1870-1782) | |
| 953-1072, gnl|dasNov1|scaffold_147515 (1874-1782) | |
| 953-1072, gnl|echTel1|scaffold_293482 (4624-4537) | |
| 953-1072, gnl|echTel1|scaffold_293482 (4645-4536) | |
| 953-1072, gnl|fr1|chrUn (147450207-147450294) | |
| 953-1072, gnl|fr1|chrUn (147450204-147450294) | |
| 953-1072, gnl|galGal2|chr7 (26080258-26080372) | |
| 953-1072, gnl|hg17|chr2 (120359576-120359690) | |
| 953-1072, gnl|Hg17|chr2 (120359601-120359723) | |
| 953-1072, gnl|hg17|chr8 (6563791-6563879) | |
| 953-1072, gnl|loxAfr1|scaffold_48377 (6515-6602) | |
| 953-1072, gnl|loxAfr1|scaffold_48377 (6489-6603) | |
| 953-1072, gnl|mm7|chr1 (119603949-119603871) | |
| 953-1072, gnl|mm7|chr1 (119603985-119603871) | |
| 953-1072, gnl|Mm7|chr1 (119603958-119603840) | |
| 953-1072, gnl|monDom2|scaffold_2 (9577857-9577743) | |
| 953-1072, gnl|oryCun1|scaffold_210071 (40640-40724) | |
| 953-1072, gnl|oryCun1|scaffold_210071 (40614-40728) | |
| 953-1072, gnl|panTro1|chr13 (6377688-6377802) | |
| 953-1072, gnl|panTro1|chr7 (6895711-6895799) | |
| 953-1072, gnl|rheMac2|chr13 (126085622-126085733) | |
| 953-1072, gnl|rheMac2|chr8 (6802579-6802667) | |
| 953-1072, gnl|rn3|chr13 (32528958-32528880) | |
| 953-1072, gnl|rn3|chr13 (32528994-32528880) | |
| 953-1072, gnl|tetNig1|chr2 (15681964-15681877) | |
| 953-1072, gnl|tetNig1|chr2 (15681967-15681877) | |
| 953-1072, gnl|xenTro1|scaffold_398 (529638-529552) | |
| 1193-1368, gnl|bosTau2|chr2 (43871260-43871085) | |
| 1193-1368, gnl|canFam2|chr19 (33160316-33160150) | |
| 1193-1368, gnl|canFam2|chr19 (33160333-33160138) | |
| 1193-1368, gnl|danRer3|chr9 (27646114-27645948) | |
| 1193-1368, gnl|danRer3|chr9 (27646125-27645936) | |
| 1193-1368, gnl|dasNov1|scaffold_147515 (1621-1470) | |
| 1193-1368, gnl|dasNov1|scaffold_24859 (210-405) | |
| 1193-1368, gnl|echTel1|scaffold_228460 (2976-2810) | |
| 1193-1368, gnl|echTel1|scaffold_228460 (2993-2798) | |
| 1193-1368, gnl|fr1|chrUn (147453492-147453646) | |
| 1193-1368, gnl|fr1|chrUn (147453472-147453659) | |
| 1193-1368, gnl|galGal2|chr7 (26094291-26094457) | |
| 1193-1368, gnl|galGal2|chr7 (26094277-26094469) | |
| 1193-1368, gnl|hg17|chr2 (120393858-120394053) | |
| 1193-1368, gnl|Hg17|chr2 (120393874-120394049) | |
| 1193-1368, gnl|hg17|chr8 (6564028-6564196) | |
| 1193-1368, gnl|loxAfr1|scaffold_28757 (23528-23694) | |
| 1193-1368, gnl|loxAfr1|scaffold_28757 (23511-23706) | |
| 1193-1368, gnl|mm7|chr1 (119582550-119582391) | |
| 1193-1368, gnl|mm7|chr1 (119582574-119582379) | |
| 1193-1368, gnl|Mm7|chr1 (119582556-119582381) | |
| 1193-1368, gnl|monDom2|scaffold_2 (9544930-9544762) | |
| 1193-1368, gnl|monDom2|scaffold_2 (9544955-9544752) | |
| 1193-1368, gnl|oryCun1|scaffold_147748 (9308-9149) | |
| 1193-1368, gnl|oryCun1|scaffold_147748 (9332-9137) | |
| 1193-1368, gnl|panTro1|chr13 (6412126-6412321) | |
| 1193-1368, gnl|panTro1|chr7 (6895948-6896116) | |
| 1193-1368, gnl|rheMac2|chr13 (126119379-126119574) | |
| 1193-1368, gnl|rheMac2|chr8 (6802817-6802985) | |
| 1193-1368, gnl|rn3|chr13 (32504057-32503898) | |
| 1193-1368, gnl|rn3|chr13 (32504081-32503886) | |
| 1193-1368, gnl|tetNig1|chr2 (15679005-15678851) | |
| 1193-1368, gnl|tetNig1|chr2 (15679018-15678838) | |
| 1193-1368, gnl|xenTro1|scaffold_398 (524925-524752) | |
| 1193-1368, gnl|xenTro1|scaffold_398 (524930-524747) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) |