Non-Coding RNA Search

Ss1.1-Tes1-TES01E110039.5.5

Sequence:


               
               AGTTGCTCCACAGCGGCCGAAGGGGCGGGCTCGGGGGCCGAGGGACCCTGAGGTGCTCGC
GGCCTGCTCGGCGGTGCAAGATGGCGGACATCTCCCTGGACGAGCTCATCCGGAAGCGCG
GGGCTGCTGCGAAGGGGCGCCTCAACGCCAGACCAGGAGTTGGAGGTATCCGATCTCGTG
TCGGGATCCAACAGAGCCTTCTCAGCCAGCCAGCACGCACCGCCACCTTCCAGCAGAGAT
TTGATGCCCGGCAGAAGATTGGCCTCTCAGATGCCCGGCTCAAGCTGGGAGTCAAAGATG
CCCGGGAAAAGCTTTTACAGAAAGATGCCCGGTTCCGGATCAAAGGGAAAGTGCAAGATG
CCAGAGAGATGCTGAACTCCCGCAAACAGCAGAGCACAGTGCCCCAGAAGCCCCGCCAGG
TGGCTGATGCCCGGGAGAAGATCAGCCTGAAGCGGAATTCTCCTGCTGCCTTCATGAGCC
CACCCATCGGGACAGTGACCCCTGCTCTAAAGCTCACTAAAACCATCCAGGTTCCACAGC
AGAAGGCCATGGCACCAGTTCATGCCCATCCTGCTGGAATGAGGATCAATGTCGTCAATA
ACCACCAGGCCAAACAGAATTTATATGACCTGGATGAAGACGATGATGTAGCTCCCATTC
CTAGTAAACAGATGAAATTTGTAGCCCCGGGCAACTTTCTCCACCATGTGGCTGGGCTGA
GCAGTTCCAAGCTTTCCATGTCCAAGGCCCTTCCTCTCACCAAAGTGGTTCAAAATGATG
CATACACAGCTCCTGCTCTCCCTTCCTCTGTTCGAACAAAAGCCTTGACCAACATGTCCC
GGACTCTAGTGAACAAGGAGGAGCCCCCCAAAGAACTGCCGCCTGCTGAGCCTGTCCTCA
GCCCTTTGGAAGGTACCAAGATGACGGTGAATAATCTGCACCCTCGAGTCACCGAGGAAG
ACATTGTTGAGCTTTTCTGTGTGTGTGGAGCCCTGAAGAGGGCTCGGCTGGTCCATCCTG
GAGTAGCAGAGGTGGTCTTTGTGAAGAAGGACGATGCCATCACCGCGTATAAGAAGTATA
ACAACCGGTGTCTAGACGGGCAACCAATGAAGTGCAACCTGCACATGAATGGGAACGTTA
TCACCTCAGACCAGCCCATCCTGCTACGGCTGAGTGACAGCCCCTCAGTGAAAAAGGAGA
GTGAGCTGCCTCGCAGGGTGAATTCTGCCGGCTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTGCTCCACAGCGGCCGAAGGGGCGGGCTCGGGGGCCGAGGGACCCTGAGGTGCTCGC
GGCCTGCTCGGCGGTGCAAGATGGCGGACATCTCCCTGGACGAGCTCATCCGGAAGCGCG
GGGCTGCTGCGAAGGGGCGCCTCAACGCCAGACCAGGAGTTGGAGGTATCCGATCTCGTG
TCGGGATCCAACAGAGCCTTCTCAGCCAGCCAGCACGCACCGCCACCTTCCAGCAGAGAT
TTGATGCCCGGCAGAAGATTGGCCTCTCAGATGCCCGGCTCAAGCTGGGAGTCAAAGATG
CCCGGGAAAAGCTTTTACAGAAAGATGCCCGGTTCCGGATCAAAGGGAAAGTGCAAGATG
CCAGAGAGATGCTGAACTCCCGCAAACAGCAGAGCACAGTGCCCCAGAAGCCCCGCCAGG
TGGCTGATGCCCGGGAGAAGATCAGCCTGAAGCGGAATTCTCCTGCTGCCTTCATGAGCC
CACCCATCGGGACAGTGACCCCTGCTCTAAAGCTCACTAAAACCATCCAGGTTCCACAGC
AGAAGGCCATGGCACCAGTTCATGCCCATCCTGCTGGAATGAGGATCAATGTCGTCAATA
ACCACCAGGCCAAACAGAATTTATATGACCTGGATGAAGACGATGATGTAGCTCCCATTC
CTAGTAAACAGATGAAATTTGTAGCCCCGGGCAACTTTCTCCACCATGTGGCTGGGCTGA
GCAGTTCCAAGCTTTCCATGTCCAAGGCCCTTCCTCTCACCAAAGTGGTTCAAAATGATG
CATACACAGCTCCTGCTCTCCCTTCCTCTGTTCGAACAAAAGCCTTGACCAACATGTCCC
GGACTCTAGTGAACAAGGAGGAGCCCCCCAAAGAACTGCCGCCTGCTGAGCCTGTCCTCA
GCCCTTTGGAAGGTACCAAGATGACGGTGAATAATCTGCACCCTCGAGTCACCGAGGAAG
ACATTGTTGAGCTTTTCTGTGTGTGTGGAGCCCTGAAGAGGGCTCGGCTGGTCCATCCTG
GAGTAGCAGAGGTGGTCTTTGTGAAGAAGGACGATGCCATCACCGCGTATAAGAAGTATA
ACAACCGGTGTCTAGACGGGCAACCAATGAAGTGCAACCTGCACATGAATGGGAACGTTA
TCACCTCAGACCAGCCCATCCTGCTACGGCTGAGTGACAGCCCCTCAGTGAAAAAGGAGA
GTGAGCTGCCTCGCAGGGTGAATTCTGCCGGCTCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34327982|dbj|BAB33368.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34327982|dbj|BAB33368.2|

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-139, gnl|bosTau2|chr5 (71405905-71405767)
               

               
               1-139, gnl|Hg17|chr22 (41335433-41335303)
               

               
               1-139, gnl|Mm7|chr15 (83233723-83233592)
               


               
               141-532, gnl|bosTau2|chr5 (71394189-71393798)
               

               
               141-532, gnl|Hg17|chr22 (41323663-41323272)
               

               
               141-532, gnl|Mm7|chr15 (83222918-83222527)
               


               
               710-890, gnl|bosTau2|chr5 (71390065-71389885)
               

               
               710-890, gnl|Hg17|chr22 (41316870-41316690)
               

               
               710-890, gnl|Mm7|chr15 (83217724-83217544)
               


               
               969-1125, gnl|bosTau2|chr5 (71387715-71387560)
               

               
               969-1125, gnl|Hg17|chr22 (41312588-41312431)
               

               
               969-1125, gnl|Mm7|chr15 (83216007-83215855)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-139, gnl|bosTau2|chr5 (71405905-71405767)
               

               
               1-139, gnl|Hg17|chr22 (41335433-41335303)
               

               
               1-139, gnl|Mm7|chr15 (83233723-83233592)
               


               
               141-532, gnl|bosTau2|chr5 (71394189-71393798)
               

               
               141-532, gnl|Hg17|chr22 (41323663-41323272)
               

               
               141-532, gnl|Mm7|chr15 (83222918-83222527)
               


               
               710-890, gnl|bosTau2|chr5 (71390065-71389885)
               

               
               710-890, gnl|Hg17|chr22 (41316870-41316690)
               

               
               710-890, gnl|Mm7|chr15 (83217724-83217544)
               


               
               969-1125, gnl|bosTau2|chr5 (71387715-71387560)
               

               
               969-1125, gnl|Hg17|chr22 (41312588-41312431)
               

               
               969-1125, gnl|Mm7|chr15 (83216007-83215855)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-139, gnl\|bosTau2\|chr5 (71405905-71405767)
	1-139, gnl\|Hg17\|chr22 (41335433-41335303)
	1-139, gnl\|Mm7\|chr15 (83233723-83233592)

	141-532, gnl\|bosTau2\|chr5 (71394189-71393798)
	141-532, gnl\|Hg17\|chr22 (41323663-41323272)
	141-532, gnl\|Mm7\|chr15 (83222918-83222527)

	710-890, gnl\|bosTau2\|chr5 (71390065-71389885)
	710-890, gnl\|Hg17\|chr22 (41316870-41316690)
	710-890, gnl\|Mm7\|chr15 (83217724-83217544)

	969-1125, gnl\|bosTau2\|chr5 (71387715-71387560)
	969-1125, gnl\|Hg17\|chr22 (41312588-41312431)
	969-1125, gnl\|Mm7\|chr15 (83216007-83215855)