Ss1.1-Tes1-TES01F010004.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACCCGTTCACGTTTATAGGAGAAACAGCAGAGGCAGGCGGACAGGTCAGCGCTTCCACG GCCGCGACCCGGCCAACCCTGACCAGACGGAGGCAAGAGCGGCATCGCGCGGCAGGCGCG GGTCGCAGCCCTCAGTCCCACTCCCCGTCGCCCTCGGGGTTGTCCTCCGGCGGCACCTCC AGGTCGCGGAAGTGGAAATTGGCCATCATGTCCCGCACGGCCAGCATCAGCCTGTTGAGG CCCTGGTCGGGGTTCAGACCCCCGGCCCCGCCGTCGTCCGGCCTCTCCCCCTCCATGGTG TAGTTTGGCAACAGCGAGCGAAAGAAGAGGGCGATGGTGTTTCCGTGGCTGACGGGGCTG AGCCTCTCCGGCCTGACGTAGGAGTAGATGGTGTCCAGGGGAGGCAGGGGGTCGAAGCCC AGCACGGACTGTGTGGTCACATCCGGAGGCAGGGCGGCCACAGCTTCCTTGATCTCGGAG AGAACCACGTGGCGGTGGATGTTTCTGGGCGCGCGCTGGTACAGCACCTTGCGCCTGCTC TCGCAGGCCTCCACTGCGGGGTCCCCGGCGTCCACCGCCTGCAGCACCTTCCGGACGTTC TCCTCCAGCCAGCTCATGGTGGCCGGCTCCTTCCAGAGAAAGTGCGACCTCCCGAGGTAC AGGCTCACCAGCTGGCTCAGGGCCGGGGGCTGACTTATCTCCGCGTCGGGCCCAAAGAAG CGGTGGCTGGCCACGGCGGCGTCGGGCCGCACGCTGCAGTACTCGAGCAGAGGCATGAGA ACTCCGGGGAACATGAGGAGGGCCTGCTGGACCAGGACCGAGGCCTGCTCCCTCGCCGAG CTCAGCTCCTGCTCGGGGAGCTCCGCCTGCTGACTCAGCAGGAAGTACGCCAGCGGCACG GAGAAGGCAAAATTTGGGAGCTGAGACAGGTTCCGATGGGCCTCCCACTCCTGAAAGAGG CGGATCAGGTACTCGTAGCTCCGCGCCCGCAAGGCCAGATGGTCGACCAGCAGCAACATG CAGAGCGGGTCCTCGTCTGGCTCCAGGCTGAGGATGAGCTTGCAGTACTCAAGCGCCGTG CGTGGGCAGCCCCGCTTCTCCAGGAAGGTCATCTGCTTGTAGAGGGCCAGGTAGAAGCTC CTGTTCTCAGGCCTGCGGTAGTCCAGCCGGCAGGTCCCGCTGGTGAGGCTGAACAGGGGG TGGAAGGCACACTCCATGCTGTGCAGCGCACGCTCTACAAGGTCCCGGGCCATCTCCTGG TCCTCCTGAAAGCGGCAGGCATCGCTGAGCTGCAGGAGCGAATCCACGTGATAGGGGCTC GTCTGCAGCAGAACCACAATGTTGTTGGGCTCCATGGACTCCACCGCGGCCAGGAACTTG TGCTGCGTTTGCTGGTACTCCTCGTTGTGCTCGAAGGCAAAGCAGGAGCGGCCCTTCTTG GACTCCAGCAGCCGCATGGACAGACCTGGTTTGCTGTAGCGCGGCCACGTGCTCTTGGGG GTGGTCAGCCACGAAGACTTGGGGTACACGCGCTGCCTCTGCCGCGGCCTCTGCTCCCCC AGGACAGCCCGGGCACCGAAGTACCTCTTCAGTTCTGTGTCCGGATTCAAGTGTCTGTGC TCCACGTACAGCACGTGCTTCCTGGAGCTCAGCGGGGGCGGGCCCGGGCGGCGGGAGCCG CTGCCGTCCTCGATCCTCTCCAGGATGCGGCCGATGTCCTCCAGCCCGTCCTCCGACGTT TCTCCGGCAGCGTTCTTCTTGTTTTTCTGTTTCCTTTTCTTCTTGCGGAGTTTGCCGCTC GCACTAGACTGCTCGGGGGGCACTGCCCTGTCAGCCACGTTGCCATCCCGCTTGGTCGCC GTGCGTCCGCCCTGGGGCCTCCTCTTGCTCCCCGAGGCCACAGTGTCCGTGAGTGGACAG TCGGTCCTGCCCCCGTTGACCACCGGGCCCTCGTCCAGGTCCTCGATGTTGATCAGCTCG AACCGGTTGTTGACGCGGACGCCCTCCTTCCCTGTGCCCCGGGCACGCCGGCCACCTGGC CCCTGCTGTGGGCATTCTTCTTCTGCATCATCGTCATCATGGAGGACAAACTGCAGGGCG CCGGGCCCAAGGGGCTCCTGGCCGCGCTGTTCCCCCCTCAGCCTCCGGAGGGCCCGGCGC GACATAGGACCCAACAGCCGCTGACGTCTGGAGACCGGCAGAAGGAAGAGCAGAAAAGAG AGCGGCCGGCGCGCCTGCGCACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACCCGTTCACGTTTATAGGAGAAACAGCAGAGGCAGGCGGACAGGTCAGCGCTTCCACG GCCGCGACCCGGCCAACCCTGACCAGACGGAGGCAAGAGCGGCATCGCGCGGCAGGCGCG GGTCGCAGCCCTCAGTCCCACTCCCCGTCGCCCTCGGGGTTGTCCTCCGGCGGCACCTCC AGGTCGCGGAAGTGGAAATTGGCCATCATGTCCCGCACGGCCAGCATCAGCCTGTTGAGG CCCTGGTCGGGGTTCAGACCCCCGGCCCCGCCGTCGTCCGGCCTCTCCCCCTCCATGGTG TAGTTTGGCAACAGCGAGCGAAAGAAGAGGGCGATGGTGTTTCCGTGGCTGACGGGGCTG AGCCTCTCCGGCCTGACGTAGGAGTAGATGGTGTCCAGGGGAGGCAGGGGGTCGAAGCCC AGCACGGACTGTGTGGTCACATCCGGAGGCAGGGCGGCCACAGCTTCCTTGATCTCGGAG AGAACCACGTGGCGGTGGATGTTTCTGGGCGCGCGCTGGTACAGCACCTTGCGCCTGCTC TCGCAGGCCTCCACTGCGGGGTCCCCGGCGTCCACCGCCTGCAGCACCTTCCGGACGTTC TCCTCCAGCCAGCTCATGGTGGCCGGCTCCTTCCAGAGAAAGTGCGACCTCCCGAGGTAC AGGCTCACCAGCTGGCTCAGGGCCGGGGGCTGACTTATCTCCGCGTCGGGCCCAAAGAAG CGGTGGCTGGCCACGGCGGCGTCGGGCCGCACGCTGCAGTACTCGAGCAGAGGCATGAGA ACTCCGGGGAACATGAGGAGGGCCTGCTGGACCAGGACCGAGGCCTGCTCCCTCGCCGAG CTCAGCTCCTGCTCGGGGAGCTCCGCCTGCTGACTCAGCAGGAAGTACGCCAGCGGCACG GAGAAGGCAAAATTTGGGAGCTGAGACAGGTTCCGATGGGCCTCCCACTCCTGAAAGAGG CGGATCAGGTACTCGTAGCTCCGCGCCCGCAAGGCCAGATGGTCGACCAGCAGCAACATG CAGAGCGGGTCCTCGTCTGGCTCCAGGCTGAGGATGAGCTTGCAGTACTCAAGCGCCGTG CGTGGGCAGCCCCGCTTCTCCAGGAAGGTCATCTGCTTGTAGAGGGCCAGGTAGAAGCTC CTGTTCTCAGGCCTGCGGTAGTCCAGCCGGCAGGTCCCGCTGGTGAGGCTGAACAGGGGG TGGAAGGCACACTCCATGCTGTGCAGCGCACGCTCTACAAGGTCCCGGGCCATCTCCTGG TCCTCCTGAAAGCGGCAGGCATCGCTGAGCTGCAGGAGCGAATCCACGTGATAGGGGCTC GTCTGCAGCAGAACCACAATGTTGTTGGGCTCCATGGACTCCACCGCGGCCAGGAACTTG TGCTGCGTTTGCTGGTACTCCTCGTTGTGCTCGAAGGCAAAGCAGGAGCGGCCCTTCTTG GACTCCAGCAGCCGCATGGACAGACCTGGTTTGCTGTAGCGCGGCCACGTGCTCTTGGGG GTGGTCAGCCACGAAGACTTGGGGTACACGCGCTGCCTCTGCCGCGGCCTCTGCTCCCCC AGGACAGCCCGGGCACCGAAGTACCTCTTCAGTTCTGTGTCCGGATTCAAGTGTCTGTGC TCCACGTACAGCACGTGCTTCCTGGAGCTCAGCGGGGGCGGGCCCGGGCGGCGGGAGCCG CTGCCGTCCTCGATCCTCTCCAGGATGCGGCCGATGTCCTCCAGCCCGTCCTCCGACGTT TCTCCGGCAGCGTTCTTCTTGTTTTTCTGTTTCCTTTTCTTCTTGCGGAGTTTGCCGCTC GCACTAGACTGCTCGGGGGGCACTGCCCTGTCAGCCACGTTGCCATCCCGCTTGGTCGCC GTGCGTCCGCCCTGGGGCCTCCTCTTGCTCCCCGAGGCCACAGTGTCCGTGAGTGGACAG TCGGTCCTGCCCCCGTTGACCACCGGGCCCTCGTCCAGGTCCTCGATGTTGATCAGCTCG AACCGGTTGTTGACGCGGACGCCCTCCTTCCCTGTGCCCCGGGCACGCCGGCCACCTGGC CCCTGCTGTGGGCATTCTTCTTCTGCATCATCGTCATCATGGAGGACAAACTGCAGGGCG CCGGGCCCAAGGGGCTCCTGGCCGCGCTGTTCCCCCCTCAGCCTCCGGAGGGCCCGGCGC GACATAGGACCCAACAGCCGCTGACGTCTGGAGACCGGCAGAAGGAAGAGCAGAAAAGAG AGCGGCCGGCGCGCCTGCGCACTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 782-943, + strand, RNAz p=0.633043 | |
| 834-943, - strand, RNAz p=0.529827 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 782-943, + strand, RNAz p=0.633043 | |
| 834-943, - strand, RNAz p=0.529827 |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 534-695, gnl|bosTau2|chr18 (15589446-15589285) | |
| 534-695, gnl|canFam2|chr5 (66700986-66700799) | |
| 534-695, gnl|danRer3|chr18 (29560297-29560468) | |
| 534-695, gnl|dasNov1|scaffold_142832 (510-698) | |
| 534-695, gnl|echTel1|scaffold_322838 (52100-51929) | |
| 534-695, gnl|fr1|chrUn (290431442-290431637) | |
| 534-695, gnl|galGal2|chrUn (16392215-16392407) | |
| 534-695, gnl|hg17|chr16 (88498837-88499024) | |
| 534-695, gnl|Hg17|chr16 (88499006-88498845) | |
| 534-695, gnl|loxAfr1|scaffold_26789 (38228-38047) | |
| 534-695, gnl|mm7|chr8 (122039044-122039219) | |
| 534-695, gnl|Mm7|chr8 (122039212-122039051) | |
| 534-695, gnl|monDom2|scaffold_23 (5825719-5825528) | |
| 534-695, gnl|oryCun1|scaffold_174123 (25841-26016) | |
| 534-695, gnl|panTro1|chr18 (83530865-83531052) | |
| 534-695, gnl|rheMac2|chr20 (88026796-88026983) | |
| 534-695, gnl|rn3|chr19 (53733193-53733368) | |
| 534-695, gnl|tetNig1|chr5 (4947396-4947230) | |
| 782-943, gnl|bosTau2|chr18 (15588032-15587871) | |
| 782-943, gnl|canFam2|chr5 (66703236-66703035) | |
| 782-943, gnl|danRer3|chr18 (29550341-29550542) | |
| 782-943, gnl|fr1|chrUn (290430968-290431170) | |
| 782-943, gnl|galGal2|chrUn (16390434-16390619) | |
| 782-943, gnl|hg17|chr16 (88494508-88494712) | |
| 782-943, gnl|Hg17|chr16 (88494703-88494542) | |
| 782-943, gnl|loxAfr1|scaffold_26789 (41156-40966) | |
| 782-943, gnl|mm7|chr8 (122036586-122036786) | |
| 782-943, gnl|Mm7|chr8 (122036780-122036619) | |
| 782-943, gnl|monDom2|scaffold_23 (5833855-5833654) | |
| 782-943, gnl|oryCun1|scaffold_174123 (23675-23875) | |
| 782-943, gnl|panTro1|chr18 (83527533-83527734) | |
| 782-943, gnl|rheMac2|chr20 (88023371-88023574) | |
| 782-943, gnl|rn3|chr19 (53727308-53727509) | |
| 782-943, gnl|tetNig1|chr5 (4947882-4947694) | |
| 782-943, gnl|xenTro1|scaffold_13 (3449529-3449344) | |
| 1333-1469, gnl|bosTau2|chr18 (15584863-15584727) | |
| 1333-1469, gnl|canFam2|chr5 (66707617-66707462) | |
| 1333-1469, gnl|danRer3|chr18 (29531545-29531683) | |
| 1333-1469, gnl|echTel1|scaffold_322838 (55161-54978) | |
| 1333-1469, gnl|fr1|chrUn (290428475-290428634) | |
| 1333-1469, gnl|galGal2|chrUn (16384860-16385029) | |
| 1333-1469, gnl|hg17|chr16 (88487604-88487788) | |
| 1333-1469, gnl|Hg17|chr16 (88487769-88487633) | |
| 1333-1469, gnl|mm7|chr8 (122030703-122030885) | |
| 1333-1469, gnl|Mm7|chr8 (122030867-122030731) | |
| 1333-1469, gnl|oryCun1|scaffold_174123 (19686-19869) | |
| 1333-1469, gnl|panTro1|chr18 (83519873-83520057) | |
| 1333-1469, gnl|rheMac2|chr20 (88015241-88015425) | |
| 1333-1469, gnl|rn3|chr19 (53721790-53721976) | |
| 1333-1469, gnl|tetNig1|chr5 (4950254-4950097) | |
| 1333-1469, gnl|xenTro1|scaffold_13 (3455037-3454885) | |
| 1615-1732, gnl|bosTau2|chr18 (15580682-15580565) | |
| 1615-1732, gnl|canFam2|chr5 (66713353-66713045) | |
| 1615-1732, gnl|dasNov1|scaffold_30470 (7622-7332) | |
| 1615-1732, gnl|echTel1|scaffold_322838 (59104-58796) | |
| 1615-1732, gnl|hg17|chr16 (88479600-88479895) | |
| 1615-1732, gnl|Hg17|chr16 (88479875-88479758) | |
| 1615-1732, gnl|mm7|chr8 (122024207-122024530) | |
| 1615-1732, gnl|Mm7|chr8 (122024513-122024396) | |
| 1615-1732, gnl|oryCun1|scaffold_174123 (13689-13967) | |
| 1615-1732, gnl|panTro1|chr18 (83511902-83512197) | |
| 1615-1732, gnl|rheMac2|chr20 (88006602-88006897) | |
| 1615-1732, gnl|rn3|chr19 (53715174-53715491) | |
| 1955-2244, gnl|bosTau2|chr18 (15571588-15571297) | |
| 1955-2244, gnl|Hg17|chr16 (88467788-88467499) | |
| 1955-2244, gnl|Mm7|chr8 (122015155-122014875) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 534-695, gnl|bosTau2|chr18 (15589446-15589285) | |
| 534-695, gnl|canFam2|chr5 (66700986-66700799) | |
| 534-695, gnl|danRer3|chr18 (29560297-29560468) | |
| 534-695, gnl|dasNov1|scaffold_142832 (510-698) | |
| 534-695, gnl|echTel1|scaffold_322838 (52100-51929) | |
| 534-695, gnl|fr1|chrUn (290431442-290431637) | |
| 534-695, gnl|galGal2|chrUn (16392215-16392407) | |
| 534-695, gnl|hg17|chr16 (88498837-88499024) | |
| 534-695, gnl|Hg17|chr16 (88499006-88498845) | |
| 534-695, gnl|loxAfr1|scaffold_26789 (38228-38047) | |
| 534-695, gnl|mm7|chr8 (122039044-122039219) | |
| 534-695, gnl|Mm7|chr8 (122039212-122039051) | |
| 534-695, gnl|monDom2|scaffold_23 (5825719-5825528) | |
| 534-695, gnl|oryCun1|scaffold_174123 (25841-26016) | |
| 534-695, gnl|panTro1|chr18 (83530865-83531052) | |
| 534-695, gnl|rheMac2|chr20 (88026796-88026983) | |
| 534-695, gnl|rn3|chr19 (53733193-53733368) | |
| 534-695, gnl|tetNig1|chr5 (4947396-4947230) | |
| 782-943, gnl|bosTau2|chr18 (15588032-15587871) | |
| 782-943, gnl|canFam2|chr5 (66703236-66703035) | |
| 782-943, gnl|danRer3|chr18 (29550341-29550542) | |
| 782-943, gnl|fr1|chrUn (290430968-290431170) | |
| 782-943, gnl|galGal2|chrUn (16390434-16390619) | |
| 782-943, gnl|hg17|chr16 (88494508-88494712) | |
| 782-943, gnl|Hg17|chr16 (88494703-88494542) | |
| 782-943, gnl|loxAfr1|scaffold_26789 (41156-40966) | |
| 782-943, gnl|mm7|chr8 (122036586-122036786) | |
| 782-943, gnl|Mm7|chr8 (122036780-122036619) | |
| 782-943, gnl|monDom2|scaffold_23 (5833855-5833654) | |
| 782-943, gnl|oryCun1|scaffold_174123 (23675-23875) | |
| 782-943, gnl|panTro1|chr18 (83527533-83527734) | |
| 782-943, gnl|rheMac2|chr20 (88023371-88023574) | |
| 782-943, gnl|rn3|chr19 (53727308-53727509) | |
| 782-943, gnl|tetNig1|chr5 (4947882-4947694) | |
| 782-943, gnl|xenTro1|scaffold_13 (3449529-3449344) | |
| 1333-1469, gnl|bosTau2|chr18 (15584863-15584727) | |
| 1333-1469, gnl|canFam2|chr5 (66707617-66707462) | |
| 1333-1469, gnl|danRer3|chr18 (29531545-29531683) | |
| 1333-1469, gnl|echTel1|scaffold_322838 (55161-54978) | |
| 1333-1469, gnl|fr1|chrUn (290428475-290428634) | |
| 1333-1469, gnl|galGal2|chrUn (16384860-16385029) | |
| 1333-1469, gnl|hg17|chr16 (88487604-88487788) | |
| 1333-1469, gnl|Hg17|chr16 (88487769-88487633) | |
| 1333-1469, gnl|mm7|chr8 (122030703-122030885) | |
| 1333-1469, gnl|Mm7|chr8 (122030867-122030731) | |
| 1333-1469, gnl|oryCun1|scaffold_174123 (19686-19869) | |
| 1333-1469, gnl|panTro1|chr18 (83519873-83520057) | |
| 1333-1469, gnl|rheMac2|chr20 (88015241-88015425) | |
| 1333-1469, gnl|rn3|chr19 (53721790-53721976) | |
| 1333-1469, gnl|tetNig1|chr5 (4950254-4950097) | |
| 1333-1469, gnl|xenTro1|scaffold_13 (3455037-3454885) | |
| 1615-1732, gnl|bosTau2|chr18 (15580682-15580565) | |
| 1615-1732, gnl|canFam2|chr5 (66713353-66713045) | |
| 1615-1732, gnl|dasNov1|scaffold_30470 (7622-7332) | |
| 1615-1732, gnl|echTel1|scaffold_322838 (59104-58796) | |
| 1615-1732, gnl|hg17|chr16 (88479600-88479895) | |
| 1615-1732, gnl|Hg17|chr16 (88479875-88479758) | |
| 1615-1732, gnl|mm7|chr8 (122024207-122024530) | |
| 1615-1732, gnl|Mm7|chr8 (122024513-122024396) | |
| 1615-1732, gnl|oryCun1|scaffold_174123 (13689-13967) | |
| 1615-1732, gnl|panTro1|chr18 (83511902-83512197) | |
| 1615-1732, gnl|rheMac2|chr20 (88006602-88006897) | |
| 1615-1732, gnl|rn3|chr19 (53715174-53715491) | |
| 1955-2244, gnl|bosTau2|chr18 (15571588-15571297) | |
| 1955-2244, gnl|Hg17|chr16 (88467788-88467499) | |
| 1955-2244, gnl|Mm7|chr8 (122015155-122014875) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| ece (0.229305) | |
| fli (0.202881) | |
| jej (0.197844) | |
| nep (0.183925) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| pla (0.133672) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| fli (0.202881) | |
| jej (0.197844) | |
| nep (0.183925) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| pla (0.133672) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) |