Ss1.1-Tes1-TES01F020013.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTTCCCGTCGGGGAGAGAGTGTAATATGGCGAAGACCTACGATTACCTGTTCAAGCTGC TGCTGATCGGGGACTCGGGGGTGGGGAAGACCTGTGTCCTGTTCCGCTTCTCCGAGGACG CCTTCAACTCCACTTTCATCTCCACCATAGGAATTGACTTTAAAATTAGGACCATAGAGC TTGATGGCAAGAGAATTAAACTACAGATATGGGACACAGCTGGTCAGGAACGGTTTCGGA CGATCACAACCGCCTACTACAGGGGCGCAATGGGCATCATGCTGGTTTACGACATCACCA ACGAGAAGTCCTTTGACAACATCCGGAACTGGATTCGAAACATTGAGGAGCATGCGTCTG CAGACGTCGAAAAGATGATACTTGGGAACAAGTGCGACGTGAATGACAAGAGACAAGTTT CCAAGGAACGGGGAGAAAAGCTGGCCCTGGACTATGGAATCAAGTTCATGGAGACCAGCG CGAAGGCCAACATCAACGTGGAGAACGCCTTTTTCACTCTCGCCAGAGACATCAAAGCAA AAATGGATAAAAAATTGGAAGGCAACAGCCCCCAGGGGAGCAACCAGGGAGTCAAAATCA CACCGGACCAGCAGAAGAGGAGCAGCTTTTTCCGATGTGTTCTTCTGTGAGGAATGCCGC CTTACTCTGAGCCTCGCTCAGCTGAGCTGACTGTGCCTGTCCTGAGTGAGCCCCTCACTC AGCCGGGGCCCTCCCACCACCACCAAACCCCCGCCGTGCCGCGGCCACCAGGCCCACGGT CACCGGGCCCACGGCCACCAGAACACAATCGAGAAATTGTTTATTTTAGTAACTGATCTT TGTCAACTCTGGAGATGGAGCGAGTTAAGAATCTGCTATTTCTCCTGCGATGTCCACTGA ATGGGTCCACGCATCGTGTAACTAGAGAGAGAGATGGAGTTGAGGCGTGGCCACCAGTAG CAGCCAGCGTGGCAGGCCTCTGCCTCTGAGCCTCGACACAGCTAGAGCCCCAGCAGGAAG CCCGTCCATGTCCTCCGCGGCAGAAGTGAGGCCCCCAAAAGCCAACGACAGCTCCAAGAG CGCCAGGCTCTGCACCCTGAGCGAGGCGACTCACATCAGGCCCGGGAAGCATCTGCCCAA CACGTCTGACGCCCACTTTCACCTCTTCTCTCAGTTTTTGGACAAGTGACAGAAACTGTT ATACATCCCACTGTCCCCCTCTACCCCCATCTCATTTTAACTGTCAAACCAAAGGGAAGC ACAAATTAAGGAAATCCTGAGGAAAGAAGCATGGAGTGGCCTTTCCTGTTTACAGCCAGG TTTGGTCCCATGGTCCAGCTGGGCCTTGGGCACAGCCAGCAGGTCTCTCTGAGGTCCCCA CCTGAGCACTGAAGGGTCACCATGTATGCCACAGGTGACCCCCAAAATGCAAAATCACAC ATGGCCCAGCCCTGAGTGGGGCACTCACTTCATCCTCCACCATCTCCAAATCGGACATTC TTTTTAGAGATTTTTATTTTTCCAGATCCATAGTGTAAGGAGATGATTCCGTCTTTTGAC TTCCAGTAGCAGACCTAGGTGATAGGGCACAAACATACATACACGTACACACACACACAC ACACACACCCCGCCTGGATGTGGCCGAGAACCCAGCTGGCGTCCCGGGGCCTGACTGCAG AGCAGTTTGGATGGGTTTTTGATTGCCGTCGTCCAGTTTTGTTTTGACCACTTTGCTTTC CCGTAGAGACTGCAGTCAGAATCAGGTAACCAGGTCAGAGGGATGTCACCAAGGAGCCTT TTTTCCTTTTTTTTTTTTTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTTCCCGTCGGGGAGAGAGTGTAATATGGCGAAGACCTACGATTACCTGTTCAAGCTGC TGCTGATCGGGGACTCGGGGGTGGGGAAGACCTGTGTCCTGTTCCGCTTCTCCGAGGACG CCTTCAACTCCACTTTCATCTCCACCATAGGAATTGACTTTAAAATTAGGACCATAGAGC TTGATGGCAAGAGAATTAAACTACAGATATGGGACACAGCTGGTCAGGAACGGTTTCGGA CGATCACAACCGCCTACTACAGGGGCGCAATGGGCATCATGCTGGTTTACGACATCACCA ACGAGAAGTCCTTTGACAACATCCGGAACTGGATTCGAAACATTGAGGAGCATGCGTCTG CAGACGTCGAAAAGATGATACTTGGGAACAAGTGCGACGTGAATGACAAGAGACAAGTTT CCAAGGAACGGGGAGAAAAGCTGGCCCTGGACTATGGAATCAAGTTCATGGAGACCAGCG CGAAGGCCAACATCAACGTGGAGAACGCCTTTTTCACTCTCGCCAGAGACATCAAAGCAA AAATGGATAAAAAATTGGAAGGCAACAGCCCCCAGGGGAGCAACCAGGGAGTCAAAATCA CACCGGACCAGCAGAAGAGGAGCAGCTTTTTCCGATGTGTTCTTCTGTGAGGAATGCCGC CTTACTCTGAGCCTCGCTCAGCTGAGCTGACTGTGCCTGTCCTGAGTGAGCCCCTCACTC AGCCGGGGCCCTCCCACCACCACCAAACCCCCGCCGTGCCGCGGCCACCAGGCCCACGGT CACCGGGCCCACGGCCACCAGAACACAATCGAGAAATTGTTTATTTTAGTAACTGATCTT TGTCAACTCTGGAGATGGAGCGAGTTAAGAATCTGCTATTTCTCCTGCGATGTCCACTGA ATGGGTCCACGCATCGTGTAACTAGAGAGAGAGATGGAGTTGAGGCGTGGCCACCAGTAG CAGCCAGCGTGGCAGGCCTCTGCCTCTGAGCCTCGACACAGCTAGAGCCCCAGCAGGAAG CCCGTCCATGTCCTCCGCGGCAGAAGTGAGGCCCCCAAAAGCCAACGACAGCTCCAAGAG CGCCAGGCTCTGCACCCTGAGCGAGGCGACTCACATCAGGCCCGGGAAGCATCTGCCCAA CACGTCTGACGCCCACTTTCACCTCTTCTCTCAGTTTTTGGACAAGTGACAGAAACTGTT ATACATCCCACTGTCCCCCTCTACCCCCATCTCATTTTAACTGTCAAACCAAAGGGAAGC ACAAATTAAGGAAATCCTGAGGAAAGAAGCATGGAGTGGCCTTTCCTGTTTACAGCCAGG TTTGGTCCCATGGTCCAGCTGGGCCTTGGGCACAGCCAGCAGGTCTCTCTGAGGTCCCCA CCTGAGCACTGAAGGGTCACCATGTATGCCACAGGTGACCCCCAAAATGCAAAATCACAC ATGGCCCAGCCCTGAGTGGGGCACTCACTTCATCCTCCACCATCTCCAAATCGGACATTC TTTTTAGAGATTTTTATTTTTCCAGATCCATAGTGTAAGGAGATGATTCCGTCTTTTGAC TTCCAGTAGCAGACCTAGGTGATAGGGCACAAACATACATACACGTACACACACACACAC ACACACACCCCGCCTGGATGTGGCCGAGAACCCAGCTGGCGTCCCGGGGCCTGACTGCAG AGCAGTTTGGATGGGTTTTTGATTGCCGTCGTCCAGTTTTGTTTTGACCACTTTGCTTTC CCGTAGAGACTGCAGTCAGAATCAGGTAACCAGGTCAGAGGGATGTCACCAAGGAGCCTT TTTTCCTTTTTTTTTTTTTTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 24-151, gnl|bosTau2|chr10 (31092927-31093054) | |
| 24-151, gnl|Hg17|chr15 (61268874-61269001) | |
| 24-151, gnl|Mm7|chr9 (66951102-66950975) | |
| 211-350, gnl|bosTau2|chr11 (54646544-54646683) | |
| 211-350, gnl|canFam2|chr17 (23234586-23234679) | |
| 211-350, gnl|danRer3|chrNA (80998120-80998213) | |
| 211-350, gnl|dasNov1|scaffold_14951 (1644-1551) | |
| 211-350, gnl|echTel1|scaffold_135228 (295-388) | |
| 211-350, gnl|fr1|chrUn (177154018-177154111) | |
| 211-350, gnl|galGal2|chr3 (102952815-102952908) | |
| 211-350, gnl|hg17|chr2 (26244286-26244379) | |
| 211-350, gnl|Hg17|chr2 (26244287-26244426) | |
| 211-350, gnl|loxAfr1|scaffold_31428 (22077-22169) | |
| 211-350, gnl|mm7|chr12 (3175480-3175387) | |
| 211-350, gnl|Mm7|chr12 (3175477-3175338) | |
| 211-350, gnl|monDom2|scaffold_1 (150618336-150618243) | |
| 211-350, gnl|oryCun1|scaffold_203679 (11304-11211) | |
| 211-350, gnl|panTro1|chr12 (27151666-27151759) | |
| 211-350, gnl|rheMac2|chr13 (26063823-26063916) | |
| 211-350, gnl|rn3|chr6_random (447880-447787) | |
| 211-350, gnl|tetNig1|chr14 (1856756-1856849) | |
| 211-350, gnl|xenTro1|scaffold_661 (268444-268537) | |
| 576-1604, gnl|bosTau2|chr7 (5086244-5087292) | |
| 1644-1815, gnl|bosTau2|chr7 (5087303-5087477) | |
| 1644-1815, gnl|canFam2|chr20 (49336624-49336453) | |
| 1644-1815, gnl|echTel1|scaffold_280855 (6556-6696) | |
| 1644-1815, gnl|hg17|chr19 (16105063-16105215) | |
| 1644-1815, gnl|Hg17|chr19 (16105080-16105325) | |
| 1644-1815, gnl|mm7|chr8 (70703910-70704047) | |
| 1644-1815, gnl|Mm7|chr8 (70703993-70704262) | |
| 1644-1815, gnl|panTro1|chr20 (16782523-16782675) | |
| 1644-1815, gnl|rheMac2|chr19 (15663062-15663214) | |
| 1644-1815, gnl|rn3|chr16 (18078884-18078747) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 24-151, gnl|bosTau2|chr10 (31092927-31093054) | |
| 24-151, gnl|Hg17|chr15 (61268874-61269001) | |
| 24-151, gnl|Mm7|chr9 (66951102-66950975) | |
| 211-350, gnl|bosTau2|chr11 (54646544-54646683) | |
| 211-350, gnl|canFam2|chr17 (23234586-23234679) | |
| 211-350, gnl|danRer3|chrNA (80998120-80998213) | |
| 211-350, gnl|dasNov1|scaffold_14951 (1644-1551) | |
| 211-350, gnl|echTel1|scaffold_135228 (295-388) | |
| 211-350, gnl|fr1|chrUn (177154018-177154111) | |
| 211-350, gnl|galGal2|chr3 (102952815-102952908) | |
| 211-350, gnl|hg17|chr2 (26244286-26244379) | |
| 211-350, gnl|Hg17|chr2 (26244287-26244426) | |
| 211-350, gnl|loxAfr1|scaffold_31428 (22077-22169) | |
| 211-350, gnl|mm7|chr12 (3175480-3175387) | |
| 211-350, gnl|Mm7|chr12 (3175477-3175338) | |
| 211-350, gnl|monDom2|scaffold_1 (150618336-150618243) | |
| 211-350, gnl|oryCun1|scaffold_203679 (11304-11211) | |
| 211-350, gnl|panTro1|chr12 (27151666-27151759) | |
| 211-350, gnl|rheMac2|chr13 (26063823-26063916) | |
| 211-350, gnl|rn3|chr6_random (447880-447787) | |
| 211-350, gnl|tetNig1|chr14 (1856756-1856849) | |
| 211-350, gnl|xenTro1|scaffold_661 (268444-268537) | |
| 576-1604, gnl|bosTau2|chr7 (5086244-5087292) | |
| 1644-1815, gnl|bosTau2|chr7 (5087303-5087477) | |
| 1644-1815, gnl|canFam2|chr20 (49336624-49336453) | |
| 1644-1815, gnl|echTel1|scaffold_280855 (6556-6696) | |
| 1644-1815, gnl|hg17|chr19 (16105063-16105215) | |
| 1644-1815, gnl|Hg17|chr19 (16105080-16105325) | |
| 1644-1815, gnl|mm7|chr8 (70703910-70704047) | |
| 1644-1815, gnl|Mm7|chr8 (70703993-70704262) | |
| 1644-1815, gnl|panTro1|chr20 (16782523-16782675) | |
| 1644-1815, gnl|rheMac2|chr19 (15663062-15663214) | |
| 1644-1815, gnl|rn3|chr16 (18078884-18078747) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cag (0.302389) | |
| ese (0.253004) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| duo (0.172801) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| pla (0.133672) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cbl (0.114797) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.302389) | |
| ese (0.253004) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| duo (0.172801) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| pla (0.133672) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cbl (0.114797) |