Ss1.1-Tes1-TES01F030001.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTGGGATCCAATCTCTTTATTGTCAGGGTCTCCTCCCTGTCC CTCCCCCGCCCCACTCCAAACCTATAGAAAAACCCCCAGCCTGGGAGTGTCCTGGGGAGG GAAGGCAGAGTGTAGGGAAACTGTGCTCTGCCCTCTGGCCTGGGCATTGCCAACAGGAAG GGAGTGTGGAGGGGATGCCAAAAACTCCACCTGCAGAGAATGTGGCACTGGTTGGGACGA GGGAGGGAGGAGGTGCCTGCTGCCAGCTCTCCTCTGGGACCCGCTGGGGGTGGCATCCAG GGGTGGGTGCCCAGCCCGGTACAGTGCACACCCTTCTCCTGCCGGTGGCCATCACTCCTG TCAGGCTGCTTACTGCAAGGCCCCATCCTCCGCGTCTGTATCCTGGCTGTGCTCCAGCTC TTCCTCGCTGTGTGTTAGCAGCCCCTCCTCGTCGCCGTCATCTCGAGCCTGTGCTTCTCC CTGGGGCGTGCCTGCCTCAGAAGCCGTGTCCTCTTGAGGGGCTGGTGGCCGGCTACTGCC ACCACTACTGCCACTGCCGCCACCACCAGCACTGCCACCACCACTGGAACTGCCAGCACC ACTGCCACCGCCGCTGCTACCACCGCCGCTGCCGCCACCGCCGCTGCCGCTGCCACTGCC ACCGCCGCTGCCACCTTCGCCCTTCTTTTTGCCGTCTGGATTGGCTTTCTGCTCCTCAGC AATCTGCTCCAAGCGACCCAGCAGGGCATCGATGTTGGACTTGATCTGGGTCAGCTCTGT CTTGATGGCCTGCAGTTCACTGCTCTTTAACTTGATCTTGGCTGAGCCGGTGGTGATAGC TGTGGAGCGGGCAAAGAGCTTGACAGGTATGGTGGTTTTGACACGCCGGACCAAGGGGAC TGTGACCCGGGGTCGCTTCACAGGGACCGCCCTGGGCACTGGCACTGGTGACAGGCGGCC CCGATAGTCGAAGAGCCTGTCGTAGAAGTCGTCCCGGTAGTAATCATAGTCAAAGCTGTA GCCACTGTATATGGCAGATGCTGTTCTTTTTAGCCCCTTGGGTCTGTTGGGCTTGGGCTC TCCAGCCATGTTGATGTCCAGGGTCTGCCCGGCCAGCACTCGCCCATTCTCTCCCAGCAC AGCTGCCCGGGCATGGCGCTCGTTGGCATACTGCACAAAGGCATAGCCCTTGTGCACAGA ACAGCCGGCCACACGGCCATACTTGGAGAAGATAGTCTCCACATCAGATTTCTTCACCAC GGCTGTGTTGAGGTTTCCAATGAAGACCCTAGAGTTGATAGACTTGGGGTCATTCTTGTT GGTTACGTTGCTTGTCTGGATCTTTAAGGACATGGTAGCCACCAGTACCAAGGCTGATCT CAGGCAGCAATTTCCTCTTTTGGGTTACAGGATCAGCACCAAATGCCTCTGAGAACAGAG CTCACCCGCGCACGGAGGTCTGGAGGAAGCCGCGCGGCGCTGAAGGAGGCGGTACCGCCG CACTCGGGGGCGGGAAGGAAGGAGGGAGAAGGCGGCCCCGGCCGCGGCGTGAGGAGCTGA GCACAGGCACGCGAATCGCCGCTGCCGCTACCGCCCCCTCAGCTTCTCTCTGCTCAGCCC ACCCCGCAGCCGCGCTGCTCGCGCGCCCCGCCGCACCTCAGCCCACCCCGCAGCCGCGCT GCTCGCGCGCCCCCTCGGCCAGCACCACTGAGGCGCGCGGGGGTAGGGGAGCACGGAGCG GGCTCCGCGCCGCCCGCCGCTCCGGCCGTGGCCCAGTCGCCCTCTTCCCCCGCCTCTGTC TCCAAAGGGCACGGCGACTCAAGCGCGAGGAGTCCGTAGCGTCGCCCTGACACAGCCCGG CCCCCCACGCGCAAGGGCTCGTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTGGGATCCAATCTCTTTATTGTCAGGGTCTCCTCCCTGTCC CTCCCCCGCCCCACTCCAAACCTATAGAAAAACCCCCAGCCTGGGAGTGTCCTGGGGAGG GAAGGCAGAGTGTAGGGAAACTGTGCTCTGCCCTCTGGCCTGGGCATTGCCAACAGGAAG GGAGTGTGGAGGGGATGCCAAAAACTCCACCTGCAGAGAATGTGGCACTGGTTGGGACGA GGGAGGGAGGAGGTGCCTGCTGCCAGCTCTCCTCTGGGACCCGCTGGGGGTGGCATCCAG GGGTGGGTGCCCAGCCCGGTACAGTGCACACCCTTCTCCTGCCGGTGGCCATCACTCCTG TCAGGCTGCTTACTGCAAGGCCCCATCCTCCGCGTCTGTATCCTGGCTGTGCTCCAGCTC TTCCTCGCTGTGTGTTAGCAGCCCCTCCTCGTCGCCGTCATCTCGAGCCTGTGCTTCTCC CTGGGGCGTGCCTGCCTCAGAAGCCGTGTCCTCTTGAGGGGCTGGTGGCCGGCTACTGCC ACCACTACTGCCACTGCCGCCACCACCAGCACTGCCACCACCACTGGAACTGCCAGCACC ACTGCCACCGCCGCTGCTACCACCGCCGCTGCCGCCACCGCCGCTGCCGCTGCCACTGCC ACCGCCGCTGCCACCTTCGCCCTTCTTTTTGCCGTCTGGATTGGCTTTCTGCTCCTCAGC AATCTGCTCCAAGCGACCCAGCAGGGCATCGATGTTGGACTTGATCTGGGTCAGCTCTGT CTTGATGGCCTGCAGTTCACTGCTCTTTAACTTGATCTTGGCTGAGCCGGTGGTGATAGC TGTGGAGCGGGCAAAGAGCTTGACAGGTATGGTGGTTTTGACACGCCGGACCAAGGGGAC TGTGACCCGGGGTCGCTTCACAGGGACCGCCCTGGGCACTGGCACTGGTGACAGGCGGCC CCGATAGTCGAAGAGCCTGTCGTAGAAGTCGTCCCGGTAGTAATCATAGTCAAAGCTGTA GCCACTGTATATGGCAGATGCTGTTCTTTTTAGCCCCTTGGGTCTGTTGGGCTTGGGCTC TCCAGCCATGTTGATGTCCAGGGTCTGCCCGGCCAGCACTCGCCCATTCTCTCCCAGCAC AGCTGCCCGGGCATGGCGCTCGTTGGCATACTGCACAAAGGCATAGCCCTTGTGCACAGA ACAGCCGGCCACACGGCCATACTTGGAGAAGATAGTCTCCACATCAGATTTCTTCACCAC GGCTGTGTTGAGGTTTCCAATGAAGACCCTAGAGTTGATAGACTTGGGGTCATTCTTGTT GGTTACGTTGCTTGTCTGGATCTTTAAGGACATGGTAGCCACCAGTACCAAGGCTGATCT CAGGCAGCAATTTCCTCTTTTGGGTTACAGGATCAGCACCAAATGCCTCTGAGAACAGAG CTCACCCGCGCACGGAGGTCTGGAGGAAGCCGCGCGGCGCTGAAGGAGGCGGTACCGCCG CACTCGGGGGCGGGAAGGAAGGAGGGAGAAGGCGGCCCCGGCCGCGGCGTGAGGAGCTGA GCACAGGCACGCGAATCGCCGCTGCCGCTACCGCCCCCTCAGCTTCTCTCTGCTCAGCCC ACCCCGCAGCCGCGCTGCTCGCGCGCCCCGCCGCACCTCAGCCCACCCCGCAGCCGCGCT GCTCGCGCGCCCCCTCGGCCAGCACCACTGAGGCGCGCGGGGGTAGGGGAGCACGGAGCG GGCTCCGCGCCGCCCGCCGCTCCGGCCGTGGCCCAGTCGCCCTCTTCCCCCGCCTCTGTC TCCAAAGGGCACGGCGACTCAAGCGCGAGGAGTCCGTAGCGTCGCCCTGACACAGCCCGG CCCCCCACGCGCAAGGGCTCGTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 44-159, - strand, RNAz p=0.590884 | |
| 58-205, - strand, RNAz p=0.971915 | |
| 493-591, - strand, RNAz p=0.697256 | |
| 863-980, + strand, RNAz p=0.597893 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 44-159, - strand, RNAz p=0.590884 | |
| 58-205, - strand, RNAz p=0.971915 | |
| 493-591, - strand, RNAz p=0.697256 | |
| 863-980, + strand, RNAz p=0.597893 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_007367, - |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 19-368, gnl|bosTau2|chr13 (47911722-47912078) | |
| 19-368, gnl|canFam2|chr24 (26230813-26231172) | |
| 19-368, gnl|dasNov1|scaffold_65101 (8834-9196) | |
| 19-368, gnl|echTel1|scaffold_319012 (133044-133288) | |
| 19-368, gnl|hg17|chr20 (32131362-32131719) | |
| 19-368, gnl|Hg17|chr20 (32131728-32131374) | |
| 19-368, gnl|loxAfr1|scaffold_31491 (12362-12726) | |
| 19-368, gnl|mm7|chr2 (154607739-154608093) | |
| 19-368, gnl|Mm7|chr2 (154608102-154607749) | |
| 19-368, gnl|oryCun1|scaffold_191249 (36376-36719) | |
| 19-368, gnl|panTro1|chr21 (34099878-34100235) | |
| 19-368, gnl|rheMac2|chr10 (30511415-30511058) | |
| 414-591, gnl|bosTau2|chr13 (47914548-47914725) | |
| 414-591, gnl|Hg17|chr20 (32128713-32128515) | |
| 414-591, gnl|Mm7|chr2 (154604908-154604692) | |
| 696-809, gnl|bosTau2|chr13 (47914951-47915064) | |
| 696-809, gnl|Hg17|chr20 (32128282-32128169) | |
| 696-809, gnl|Mm7|chr2 (154604521-154604408) | |
| 810-980, gnl|bosTau2|chr13 (47915710-47915880) | |
| 810-980, gnl|canFam2|chr24 (26227054-26227244) | |
| 810-980, gnl|danRer3|chr6 (31935438-31935272) | |
| 810-980, gnl|dasNov1|scaffold_65101 (4756-4946) | |
| 810-980, gnl|echTel1|scaffold_319012 (129794-129984) | |
| 810-980, gnl|galGal2|chr20 (1585528-1585351) | |
| 810-980, gnl|hg17|chr20 (32127339-32127529) | |
| 810-980, gnl|Hg17|chr20 (32127507-32127337) | |
| 810-980, gnl|loxAfr1|scaffold_31491 (8510-8698) | |
| 810-980, gnl|mm7|chr2 (154602696-154602874) | |
| 810-980, gnl|Mm7|chr2 (154602864-154602694) | |
| 810-980, gnl|monDom2|scaffold_6 (12986676-12986509) | |
| 810-980, gnl|oryCun1|scaffold_206370 (26392-26198) | |
| 810-980, gnl|panTro1|chr21 (34095858-34096048) | |
| 810-980, gnl|rheMac2|chr10 (30515415-30515226) | |
| 810-980, gnl|rn3|chr3 (145241214-145241407) | |
| 1098-1372, gnl|bosTau2|chr13 (47919493-47919767) | |
| 1098-1372, gnl|Hg17|chr20 (32123797-32123523) | |
| 1098-1372, gnl|Mm7|chr2 (154598391-154598113) | |
| 1105-1356, gnl|bosTau2|chr10 (15787282-15787533) | |
| 1105-1356, gnl|Hg17|chr14 (20771959-20772210) | |
| 1105-1356, gnl|Mm7|chr14 (47417802-47418053) | |
| 1441-1884, gnl|bosTau2|chr13 (48030553-48031014) | |
| 1441-1884, gnl|Hg17|chr20 (32045603-32045146) | |
| 1441-1884, gnl|Mm7|chr2 (154532411-154531985) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 19-368, gnl|bosTau2|chr13 (47911722-47912078) | |
| 19-368, gnl|canFam2|chr24 (26230813-26231172) | |
| 19-368, gnl|dasNov1|scaffold_65101 (8834-9196) | |
| 19-368, gnl|echTel1|scaffold_319012 (133044-133288) | |
| 19-368, gnl|hg17|chr20 (32131362-32131719) | |
| 19-368, gnl|Hg17|chr20 (32131728-32131374) | |
| 19-368, gnl|loxAfr1|scaffold_31491 (12362-12726) | |
| 19-368, gnl|mm7|chr2 (154607739-154608093) | |
| 19-368, gnl|Mm7|chr2 (154608102-154607749) | |
| 19-368, gnl|oryCun1|scaffold_191249 (36376-36719) | |
| 19-368, gnl|panTro1|chr21 (34099878-34100235) | |
| 19-368, gnl|rheMac2|chr10 (30511415-30511058) | |
| 414-591, gnl|bosTau2|chr13 (47914548-47914725) | |
| 414-591, gnl|Hg17|chr20 (32128713-32128515) | |
| 414-591, gnl|Mm7|chr2 (154604908-154604692) | |
| 696-809, gnl|bosTau2|chr13 (47914951-47915064) | |
| 696-809, gnl|Hg17|chr20 (32128282-32128169) | |
| 696-809, gnl|Mm7|chr2 (154604521-154604408) | |
| 810-980, gnl|bosTau2|chr13 (47915710-47915880) | |
| 810-980, gnl|canFam2|chr24 (26227054-26227244) | |
| 810-980, gnl|danRer3|chr6 (31935438-31935272) | |
| 810-980, gnl|dasNov1|scaffold_65101 (4756-4946) | |
| 810-980, gnl|echTel1|scaffold_319012 (129794-129984) | |
| 810-980, gnl|galGal2|chr20 (1585528-1585351) | |
| 810-980, gnl|hg17|chr20 (32127339-32127529) | |
| 810-980, gnl|Hg17|chr20 (32127507-32127337) | |
| 810-980, gnl|loxAfr1|scaffold_31491 (8510-8698) | |
| 810-980, gnl|mm7|chr2 (154602696-154602874) | |
| 810-980, gnl|Mm7|chr2 (154602864-154602694) | |
| 810-980, gnl|monDom2|scaffold_6 (12986676-12986509) | |
| 810-980, gnl|oryCun1|scaffold_206370 (26392-26198) | |
| 810-980, gnl|panTro1|chr21 (34095858-34096048) | |
| 810-980, gnl|rheMac2|chr10 (30515415-30515226) | |
| 810-980, gnl|rn3|chr3 (145241214-145241407) | |
| 1098-1372, gnl|bosTau2|chr13 (47919493-47919767) | |
| 1098-1372, gnl|Hg17|chr20 (32123797-32123523) | |
| 1098-1372, gnl|Mm7|chr2 (154598391-154598113) | |
| 1105-1356, gnl|bosTau2|chr10 (15787282-15787533) | |
| 1105-1356, gnl|Hg17|chr14 (20771959-20772210) | |
| 1105-1356, gnl|Mm7|chr14 (47417802-47418053) | |
| 1441-1884, gnl|bosTau2|chr13 (48030553-48031014) | |
| 1441-1884, gnl|Hg17|chr20 (32045603-32045146) | |
| 1441-1884, gnl|Mm7|chr2 (154532411-154531985) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| nlu (0.575043) | |
| fce (0.543183) | |
| ecc (0.46014) | |
| amn (0.417711) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| nep (0.36785) | |
| ebs (0.354904) | |
| fty (0.351679) | |
| fhi (0.339155) | |
| jej (0.296765) | |
| cga (0.279096) | |
| eep (0.245128) | |
| clu (0.239292) | |
| eje (0.197668) | |
| col (0.195008) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ese (0.126502) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.575043) | |
| fce (0.543183) | |
| ecc (0.46014) | |
| amn (0.417711) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| nep (0.36785) | |
| ebs (0.354904) | |
| fty (0.351679) | |
| fhi (0.339155) | |
| jej (0.296765) | |
| cga (0.279096) | |
| eep (0.245128) | |
| clu (0.239292) | |
| eje (0.197668) | |
| col (0.195008) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ese (0.126502) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) |