Ss1.1-Tes1-TES01F030045.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTAAGAGTGGGGCTCGCGGTTCGGACCCGGAAGGGGAGCCCGAGAGTGGGAGCTGCGGC CCGGGAGGTGCTGAGGCTCCGCCCCGCCCGGCCCGGCGATGGAGTTTCCGGACCTGGGGG CTCACTGTTCGGAGCCGAGCTGTCAGCGCTTGGATTTTCTGCCGCTTAAGTGTGACGCCT GCTCGGGCATTTTCTGCGCAGACCATGTGGCCTATGCCCAGCATCACTGTGCATCCGCTT ACCAAAAGGACATCCAGGTACCTGTATGCCCACTTTGTAACGTGCCTGTACCTGTGGCCA GAGGAGAGCCCCCTGACCGTGCTGTTGGGGAGCACATTGACCGAGACTGTCGCTCTGATC CAGCTCAGCAAAAACGTAAGATCTTCACCAATAGATGTGAACGCTCTGGCTGCCGGCAGC GGGAAATGATGAAACTGACCTGTGAACGCTGTGGCCGAAACTTTTGCATCAAGCACCGTC ACCCACTGGACCATGATTGCTCTGGGGAGGGGCACGGGCACCCAACTAGTAGGGCAGGAC TTGCTGCCATCTCCAGAGCACAAAGCCTAGCTGCTTCTGCAAAGACCATCCCCAGCCCAA ACCAGACCTTGCCTTCATCTACCTCTGCCAGCAGAGCCACAACCCAGTCTCCATCCCGGA CCACCCCTCCAGTGATCGCTTTGCAGAATGGCTTGAGTGAGGATGAGGCTCTGCAGCGAG CCCTGGAGCTCTCCCTGGCAGAGACCAAACCCCAGGTCCCAAGTTCTCAGGAGGAAGAAG ATTTAGCTTTAGCACAAGCACTATCAGCCAGCGAGGCAGAATACCGACAGCAGCAGGCTC AAAGCCGCAGCTTGAAGCCGTCCAACTGCACCCTGTGCTAGGGCCTTGGGCTTGGGGAGG GAGGCTCAGCTGAGGAGGACTGTGGCCCTCGTACCTCTAGGGTCCACAGGGAGAGGAGGC CCAGAGCAGCCTGGAGTGAAGACGAGGAGCAGTGTCGTGGAGGGCGTCTCCAGGGATCAC CGGGAGAAACAGCTTGTGGAGCTGAGCCTACAGGTGGCTTTGCTGCCTCTCCAGCTGCGT GGGAGAGAGCAGCCTGGAACTGCTCCCCGGCTGGGCCTTGCATCTTACTCCCCAAACACT GGAGCAGCCCCGAAGTGCAGGGGGCAGGCGGGGGTGCCGAGAACGAATAAAGGATCTTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTAAGAGTGGGGCTCGCGGTTCGGACCCGGAAGGGGAGCCCGAGAGTGGGAGCTGCGGC CCGGGAGGTGCTGAGGCTCCGCCCCGCCCGGCCCGGCGATGGAGTTTCCGGACCTGGGGG CTCACTGTTCGGAGCCGAGCTGTCAGCGCTTGGATTTTCTGCCGCTTAAGTGTGACGCCT GCTCGGGCATTTTCTGCGCAGACCATGTGGCCTATGCCCAGCATCACTGTGCATCCGCTT ACCAAAAGGACATCCAGGTACCTGTATGCCCACTTTGTAACGTGCCTGTACCTGTGGCCA GAGGAGAGCCCCCTGACCGTGCTGTTGGGGAGCACATTGACCGAGACTGTCGCTCTGATC CAGCTCAGCAAAAACGTAAGATCTTCACCAATAGATGTGAACGCTCTGGCTGCCGGCAGC GGGAAATGATGAAACTGACCTGTGAACGCTGTGGCCGAAACTTTTGCATCAAGCACCGTC ACCCACTGGACCATGATTGCTCTGGGGAGGGGCACGGGCACCCAACTAGTAGGGCAGGAC TTGCTGCCATCTCCAGAGCACAAAGCCTAGCTGCTTCTGCAAAGACCATCCCCAGCCCAA ACCAGACCTTGCCTTCATCTACCTCTGCCAGCAGAGCCACAACCCAGTCTCCATCCCGGA CCACCCCTCCAGTGATCGCTTTGCAGAATGGCTTGAGTGAGGATGAGGCTCTGCAGCGAG CCCTGGAGCTCTCCCTGGCAGAGACCAAACCCCAGGTCCCAAGTTCTCAGGAGGAAGAAG ATTTAGCTTTAGCACAAGCACTATCAGCCAGCGAGGCAGAATACCGACAGCAGCAGGCTC AAAGCCGCAGCTTGAAGCCGTCCAACTGCACCCTGTGCTAGGGCCTTGGGCTTGGGGAGG GAGGCTCAGCTGAGGAGGACTGTGGCCCTCGTACCTCTAGGGTCCACAGGGAGAGGAGGC CCAGAGCAGCCTGGAGTGAAGACGAGGAGCAGTGTCGTGGAGGGCGTCTCCAGGGATCAC CGGGAGAAACAGCTTGTGGAGCTGAGCCTACAGGTGGCTTTGCTGCCTCTCCAGCTGCGT GGGAGAGAGCAGCCTGGAACTGCTCCCCGGCTGGGCCTTGCATCTTACTCCCCAAACACT GGAGCAGCCCCGAAGTGCAGGGGGCAGGCGGGGGTGCCGAGAACGAATAAAGGATCTTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 913-1030, + strand, RNAz p=0.636636 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 913-1030, + strand, RNAz p=0.636636 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_138802, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 5-153, gnl|bosTau2|chr2 (65151764-65151910) | |
| 5-153, gnl|Hg17|chr2 (219897123-219897269) | |
| 5-153, gnl|Mm7|chr1 (75392007-75392155) | |
| 374-538, gnl|bosTau2|chr2 (65152750-65152908) | |
| 374-538, gnl|canFam2|chr37 (28758055-28758235) | |
| 374-538, gnl|danRer3|chr3 (39149887-39150054) | |
| 374-538, gnl|dasNov1|scaffold_4192 (16555-16374) | |
| 374-538, gnl|echTel1|scaffold_308242 (91934-92114) | |
| 374-538, gnl|fr1|chrUn (105350449-105350613) | |
| 374-538, gnl|galGal2|chrUn (50488424-50488614) | |
| 374-538, gnl|hg17|chr2 (219898087-219898266) | |
| 374-538, gnl|Hg17|chr2 (219898107-219898265) | |
| 374-538, gnl|loxAfr1|scaffold_145 (56598-56778) | |
| 374-538, gnl|mm7|chr1 (75392972-75393166) | |
| 374-538, gnl|Mm7|chr1 (75393007-75393165) | |
| 374-538, gnl|monDom2|scaffold_39 (1344452-1344275) | |
| 374-538, gnl|oryCun1|scaffold_198528 (84814-84993) | |
| 374-538, gnl|panTro1|chr13 (110060978-110061157) | |
| 374-538, gnl|rheMac2|chr12 (83062016-83062195) | |
| 374-538, gnl|rn3|chr9 (74599808-74600004) | |
| 374-538, gnl|tetNig1|chr3 (12048039-12047877) | |
| 374-538, gnl|xenTro1|scaffold_31 (3073833-3074012) | |
| 834-1195, gnl|bosTau2|chr2 (65154140-65154518) | |
| 834-1195, gnl|Hg17|chr2 (219899486-219899856) | |
| 834-1195, gnl|Mm7|chr1 (75394482-75394861) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-153, gnl|bosTau2|chr2 (65151764-65151910) | |
| 5-153, gnl|Hg17|chr2 (219897123-219897269) | |
| 5-153, gnl|Mm7|chr1 (75392007-75392155) | |
| 374-538, gnl|bosTau2|chr2 (65152750-65152908) | |
| 374-538, gnl|canFam2|chr37 (28758055-28758235) | |
| 374-538, gnl|danRer3|chr3 (39149887-39150054) | |
| 374-538, gnl|dasNov1|scaffold_4192 (16555-16374) | |
| 374-538, gnl|echTel1|scaffold_308242 (91934-92114) | |
| 374-538, gnl|fr1|chrUn (105350449-105350613) | |
| 374-538, gnl|galGal2|chrUn (50488424-50488614) | |
| 374-538, gnl|hg17|chr2 (219898087-219898266) | |
| 374-538, gnl|Hg17|chr2 (219898107-219898265) | |
| 374-538, gnl|loxAfr1|scaffold_145 (56598-56778) | |
| 374-538, gnl|mm7|chr1 (75392972-75393166) | |
| 374-538, gnl|Mm7|chr1 (75393007-75393165) | |
| 374-538, gnl|monDom2|scaffold_39 (1344452-1344275) | |
| 374-538, gnl|oryCun1|scaffold_198528 (84814-84993) | |
| 374-538, gnl|panTro1|chr13 (110060978-110061157) | |
| 374-538, gnl|rheMac2|chr12 (83062016-83062195) | |
| 374-538, gnl|rn3|chr9 (74599808-74600004) | |
| 374-538, gnl|tetNig1|chr3 (12048039-12047877) | |
| 374-538, gnl|xenTro1|scaffold_31 (3073833-3074012) | |
| 834-1195, gnl|bosTau2|chr2 (65154140-65154518) | |
| 834-1195, gnl|Hg17|chr2 (219899486-219899856) | |
| 834-1195, gnl|Mm7|chr1 (75394482-75394861) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cty (0.20816) | |
| ill (0.175593) | |
| csp (0.161186) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| eep (0.122564) | |
| eru (0.120048) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| ill (0.175593) | |
| csp (0.161186) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| eep (0.122564) | |
| eru (0.120048) |