Ss1.1-Tes1-TES01F040033.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCCTCATTTAGAGGAGCCGGGGCTGGAGCCGCAGCTGTTGCGGATCTGAACCTGACCT GCTGGGAGCTGTTCCTGTGGCTGCCGCAGCGAAGCCGCTGCGCACAGAACTGTCACCATG CCCCACTCCTACCCAGCCCTTTCTGCTGAGCAGAAGAAGGAGCTGTCTGACATTGCCCTC CGGATTGTAGCCCCAGGCAAGGGCATTCTGGCCGCAGATGAATCTGTAGGCAGCATGGCC AAGCGGCTGAGCCAAATTGGGGTGGAGAACACAGAGGAGAACCGCCGGTTATACCGCCAG GTCCTGTTTAGTGCCGATGACCGTGTGAAGAAGTGCATTGGAGGTGTCATCTTCTTCCAT GAGACCCTCTACCAGAAAGATGATAATGGGGTCCCCTTCGTCCGTACCATCCAGGATAAA GGCATTGTTGTGGGCATCAAGGTGGACAAGGGTGTAGTGCCTCTGGCCGGGACTGATGGA GAAACAACCACTCAAGGACTGGATGGGCTCTCAGAACGCTGTGCCCAGTACAAGAAGGAT GGTGCCGACTTTGCCAAGTGGCGCTGCGTGCTGAAAATCAGTGAGCGCACACCGTCAGCA CTTGCCATTCTGGAGAATGCCAACGTGCTGGCCCGCTATGCCAGCATCTGCCAGCAGAAT GGGATTGTGCCTATTGTGGAACCTGAAATCCTGCCTGATGGAGACCATGACCTCAAACGT TGCCAGTATGTTACAGAGAAGGTCCTGGCTGCGGTGTACAAGGCCCTGAATGACCATCAC GTGTACCTGGAGGGGACCTTGCTCAAGCCCAACATGGTGACTCCTGGACATGCCTGTCCC ATTAAGTATAGCCCAGAGGAGATTGCCATGGCAACTGTCACTGCCCTGCGTCGCACTGTG CCCCCAGCTGTCCCAGGAGTGACCTTCCTATCTGGGGGTCAGAGTGAAGAGGAGGCATCT CTCAACCTCAATGCAATCAACCGTTGTCCCCTTCCCCGGCCCTGGGCCCTCACCTTCTCC TATGGGCGTGCCCTGCAGGCCTCTGCACTCAATGCGTGGCGAGGGCAACAGGACAACGCT GGGGCCGCCACGGAGGAGTTCATCAAGCGGGCCGAGGTGAATGGGCTTGCGGCCCAGGGC AAGTATGAAGGCGGTGGAGAAGATGGTGGAGCGGCAGCACAGTCCCTCTACATTGCTAAC CACGCCTACTGAGGACCCACTCCACGCCACAGCCCTGGGCCTGGCCACCTGCTCCCGGTC TTGCCTGTAGTTAGGGCCAGGGCCAAGTATCCATGCAGAGCAGAGATGCCTCCATCCAGC ACTGAGTCATCTTCCTTTTTTTCTCCCCCTCTCCCCTCTCCCATTGCTGCACCTGGGACC ATTGGATGGGAGGATAGGGAGCCCCTTGACTGAGGGCAGGAGAACTTGCTAGATGTCAGA GCAGAATGCCTGGGTCTCCCCCCACCTCTGCCAGCCCCCACAATTTCCCCACCGTGGGGT TGCTTATCCTTGGGCTCTCCTTGCCCACCCCCTCTCCTGGGATCAGAGGGTAGGACACCA GAGCTTACTCATGCTTTGGCTACATACCATATAGCAAATAAATGGTAGCAAAACAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCCTCATTTAGAGGAGCCGGGGCTGGAGCCGCAGCTGTTGCGGATCTGAACCTGACCT GCTGGGAGCTGTTCCTGTGGCTGCCGCAGCGAAGCCGCTGCGCACAGAACTGTCACCATG CCCCACTCCTACCCAGCCCTTTCTGCTGAGCAGAAGAAGGAGCTGTCTGACATTGCCCTC CGGATTGTAGCCCCAGGCAAGGGCATTCTGGCCGCAGATGAATCTGTAGGCAGCATGGCC AAGCGGCTGAGCCAAATTGGGGTGGAGAACACAGAGGAGAACCGCCGGTTATACCGCCAG GTCCTGTTTAGTGCCGATGACCGTGTGAAGAAGTGCATTGGAGGTGTCATCTTCTTCCAT GAGACCCTCTACCAGAAAGATGATAATGGGGTCCCCTTCGTCCGTACCATCCAGGATAAA GGCATTGTTGTGGGCATCAAGGTGGACAAGGGTGTAGTGCCTCTGGCCGGGACTGATGGA GAAACAACCACTCAAGGACTGGATGGGCTCTCAGAACGCTGTGCCCAGTACAAGAAGGAT GGTGCCGACTTTGCCAAGTGGCGCTGCGTGCTGAAAATCAGTGAGCGCACACCGTCAGCA CTTGCCATTCTGGAGAATGCCAACGTGCTGGCCCGCTATGCCAGCATCTGCCAGCAGAAT GGGATTGTGCCTATTGTGGAACCTGAAATCCTGCCTGATGGAGACCATGACCTCAAACGT TGCCAGTATGTTACAGAGAAGGTCCTGGCTGCGGTGTACAAGGCCCTGAATGACCATCAC GTGTACCTGGAGGGGACCTTGCTCAAGCCCAACATGGTGACTCCTGGACATGCCTGTCCC ATTAAGTATAGCCCAGAGGAGATTGCCATGGCAACTGTCACTGCCCTGCGTCGCACTGTG CCCCCAGCTGTCCCAGGAGTGACCTTCCTATCTGGGGGTCAGAGTGAAGAGGAGGCATCT CTCAACCTCAATGCAATCAACCGTTGTCCCCTTCCCCGGCCCTGGGCCCTCACCTTCTCC TATGGGCGTGCCCTGCAGGCCTCTGCACTCAATGCGTGGCGAGGGCAACAGGACAACGCT GGGGCCGCCACGGAGGAGTTCATCAAGCGGGCCGAGGTGAATGGGCTTGCGGCCCAGGGC AAGTATGAAGGCGGTGGAGAAGATGGTGGAGCGGCAGCACAGTCCCTCTACATTGCTAAC CACGCCTACTGAGGACCCACTCCACGCCACAGCCCTGGGCCTGGCCACCTGCTCCCGGTC TTGCCTGTAGTTAGGGCCAGGGCCAAGTATCCATGCAGAGCAGAGATGCCTCCATCCAGC ACTGAGTCATCTTCCTTTTTTTCTCCCCCTCTCCCCTCTCCCATTGCTGCACCTGGGACC ATTGGATGGGAGGATAGGGAGCCCCTTGACTGAGGGCAGGAGAACTTGCTAGATGTCAGA GCAGAATGCCTGGGTCTCCCCCCACCTCTGCCAGCCCCCACAATTTCCCCACCGTGGGGT TGCTTATCCTTGGGCTCTCCTTGCCCACCCCCTCTCCTGGGATCAGAGGGTAGGACACCA GAGCTTACTCATGCTTTGGCTACATACCATATAGCAAATAAATGGTAGCAAAACAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 527-1542, - strand, RNAz p=0.9793 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 527-1542, - strand, RNAz p=0.9793 |
| Aligned organism(s): 81 entry(ies) | More info |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
| 102-224, gnl|bosTau2|chr25 (25399404-25399525) | |
| 102-224, gnl|canFam2|chr20 (54941699-54941580) | |
| 102-224, gnl|canFam2|chr6 (21092623-21092505) | |
| 102-224, gnl|danRer3|chr12 (827453-827562) | |
| 102-224, gnl|danRer3|chr3 (38298424-38298539) | |
| 102-224, gnl|dasNov1|scaffold_45893 (17868-17749) | |
| 102-224, gnl|dasNov1|scaffold_45893 (17747-17865) | |
| 102-224, gnl|echTel1|scaffold_269016 (8744-8629) | |
| 102-224, gnl|echTel1|scaffold_269016 (8627-8740) | |
| 102-224, gnl|fr1|chrUn (113224297-113224187) | |
| 102-224, gnl|fr1|chrUn (113224186-113224303) | |
| 102-224, gnl|galGal2|chrZ (27567716-27567603) | |
| 102-224, gnl|hg17|chr10 (127346398-127346516) | |
| 102-224, gnl|Hg17|chr16 (29986056-29986183) | |
| 102-224, gnl|hg17|chr3 (52202218-52202334) | |
| 102-224, gnl|loxAfr1|scaffold_1209 (105771-105652) | |
| 102-224, gnl|loxAfr1|scaffold_1209 (105650-105768) | |
| 102-224, gnl|mm7|chr12 (53491532-53491651) | |
| 102-224, gnl|mm7|chr12 (53491653-53491535) | |
| 102-224, gnl|Mm7|chr7 (122894334-122894207) | |
| 102-224, gnl|monDom2|scaffold_10 (48369845-48369963) | |
| 102-224, gnl|monDom2|scaffold_5 (119672342-119672229) | |
| 102-224, gnl|oryCun1|scaffold_204194 (17682-17563) | |
| 102-224, gnl|oryCun1|scaffold_204194 (17561-17678) | |
| 102-224, gnl|panTro1|chr2 (53815465-53815581) | |
| 102-224, gnl|panTro1|chr8 (129865051-129865169) | |
| 102-224, gnl|rheMac2|chr2 (84203419-84203300) | |
| 102-224, gnl|rheMac2|chrX (72609749-72609867) | |
| 102-224, gnl|rn3|chr18 (30226734-30226852) | |
| 102-224, gnl|rn3|chr6 (75815316-75815198) | |
| 102-224, gnl|tetNig1|chr15 (6972068-6971958) | |
| 102-224, gnl|tetNig1|chr15 (6971957-6972068) | |
| 102-224, gnl|xenTro1|scaffold_1917 (43353-43241) | |
| 102-224, gnl|xenTro1|scaffold_1917 (43232-43350) | |
| 228-444, gnl|bosTau2|chr19 (13574098-13573882) | |
| 228-444, gnl|canFam2|chr9 (46106604-46106836) | |
| 228-444, gnl|danRer3|chr15 (11970853-11971085) | |
| 228-444, gnl|dasNov1|scaffold_9430 (8699-8467) | |
| 228-444, gnl|echTel1|scaffold_317923 (5475-5707) | |
| 228-444, gnl|fr1|chrUn (15705750-15705982) | |
| 228-444, gnl|galGal2|chrZ (27567009-27567330) | |
| 228-444, gnl|hg17|chr17 (23926255-23926487) | |
| 228-444, gnl|Hg17|chr17 (23926481-23926265) | |
| 228-444, gnl|loxAfr1|scaffold_66389 (1030-1262) | |
| 228-444, gnl|mm7|chr11 (78406407-78406173) | |
| 228-444, gnl|Mm7|chr11 (78406177-78406395) | |
| 228-444, gnl|monDom2|scaffold_44 (14491039-14491271) | |
| 228-444, gnl|oryCun1|scaffold_190404 (77622-77390) | |
| 228-444, gnl|panTro1|chr19_random (12738864-12739096) | |
| 228-444, gnl|rheMac2|chr16 (23770665-23770897) | |
| 228-444, gnl|rn3|chr10 (64324355-64324589) | |
| 228-444, gnl|tetNig1|chr16 (3848079-3847847) | |
| 228-444, gnl|xenTro1|scaffold_50 (1449183-1448952) | |
| 488-668, gnl|bosTau2|chr25 (25400862-25401041) | |
| 488-668, gnl|Hg17|chr16 (29987632-29987810) | |
| 488-668, gnl|Mm7|chr7 (122893322-122893144) | |
| 495-657, gnl|bosTau2|chr19 (13573624-13573462) | |
| 495-657, gnl|canFam2|chr9 (46105974-46106113) | |
| 495-657, gnl|danRer3|chr15 (11965597-11965735) | |
| 495-657, gnl|dasNov1|scaffold_209379 (595-470) | |
| 495-657, gnl|echTel1|scaffold_317923 (5078-5217) | |
| 495-657, gnl|fr1|chrUn (15705349-15705487) | |
| 495-657, gnl|galGal2|chrZ (27566505-27566644) | |
| 495-657, gnl|hg17|chr17 (23925838-23925977) | |
| 495-657, gnl|Hg17|chr17 (23926003-23925841) | |
| 495-657, gnl|loxAfr1|scaffold_5483 (20454-20593) | |
| 495-657, gnl|mm7|chr11 (78406788-78406650) | |
| 495-657, gnl|Mm7|chr11 (78406622-78406784) | |
| 495-657, gnl|monDom2|scaffold_44 (14490512-14490658) | |
| 495-657, gnl|oryCun1|scaffold_190404 (78028-77889) | |
| 495-657, gnl|panTro1|chr19_random (12738447-12738586) | |
| 495-657, gnl|rheMac2|chr16 (23770248-23770387) | |
| 495-657, gnl|rn3|chr10 (64323971-64324109) | |
| 495-657, gnl|tetNig1|chr16 (3848438-3848300) | |
| 495-657, gnl|xenTro1|scaffold_50 (1450042-1449904) | |
| 740-917, gnl|bosTau2|chr19 (13573025-13572848) | |
| 740-917, gnl|Hg17|chr17 (23925392-23925211) | |
| 740-917, gnl|Mm7|chr11 (78407215-78407392) | |
| 1115-1615, gnl|bosTau2|chr19 (13572389-13571889) | |
| 1115-1615, gnl|Hg17|chr17 (23924768-23924265) | |
| 1115-1615, gnl|Mm7|chr11 (78407835-78408331) |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 102-224, gnl|bosTau2|chr25 (25399404-25399525) | |
| 102-224, gnl|canFam2|chr20 (54941699-54941580) | |
| 102-224, gnl|canFam2|chr6 (21092623-21092505) | |
| 102-224, gnl|danRer3|chr12 (827453-827562) | |
| 102-224, gnl|danRer3|chr3 (38298424-38298539) | |
| 102-224, gnl|dasNov1|scaffold_45893 (17868-17749) | |
| 102-224, gnl|dasNov1|scaffold_45893 (17747-17865) | |
| 102-224, gnl|echTel1|scaffold_269016 (8744-8629) | |
| 102-224, gnl|echTel1|scaffold_269016 (8627-8740) | |
| 102-224, gnl|fr1|chrUn (113224297-113224187) | |
| 102-224, gnl|fr1|chrUn (113224186-113224303) | |
| 102-224, gnl|galGal2|chrZ (27567716-27567603) | |
| 102-224, gnl|hg17|chr10 (127346398-127346516) | |
| 102-224, gnl|Hg17|chr16 (29986056-29986183) | |
| 102-224, gnl|hg17|chr3 (52202218-52202334) | |
| 102-224, gnl|loxAfr1|scaffold_1209 (105771-105652) | |
| 102-224, gnl|loxAfr1|scaffold_1209 (105650-105768) | |
| 102-224, gnl|mm7|chr12 (53491532-53491651) | |
| 102-224, gnl|mm7|chr12 (53491653-53491535) | |
| 102-224, gnl|Mm7|chr7 (122894334-122894207) | |
| 102-224, gnl|monDom2|scaffold_10 (48369845-48369963) | |
| 102-224, gnl|monDom2|scaffold_5 (119672342-119672229) | |
| 102-224, gnl|oryCun1|scaffold_204194 (17682-17563) | |
| 102-224, gnl|oryCun1|scaffold_204194 (17561-17678) | |
| 102-224, gnl|panTro1|chr2 (53815465-53815581) | |
| 102-224, gnl|panTro1|chr8 (129865051-129865169) | |
| 102-224, gnl|rheMac2|chr2 (84203419-84203300) | |
| 102-224, gnl|rheMac2|chrX (72609749-72609867) | |
| 102-224, gnl|rn3|chr18 (30226734-30226852) | |
| 102-224, gnl|rn3|chr6 (75815316-75815198) | |
| 102-224, gnl|tetNig1|chr15 (6972068-6971958) | |
| 102-224, gnl|tetNig1|chr15 (6971957-6972068) | |
| 102-224, gnl|xenTro1|scaffold_1917 (43353-43241) | |
| 102-224, gnl|xenTro1|scaffold_1917 (43232-43350) | |
| 228-444, gnl|bosTau2|chr19 (13574098-13573882) | |
| 228-444, gnl|canFam2|chr9 (46106604-46106836) | |
| 228-444, gnl|danRer3|chr15 (11970853-11971085) | |
| 228-444, gnl|dasNov1|scaffold_9430 (8699-8467) | |
| 228-444, gnl|echTel1|scaffold_317923 (5475-5707) | |
| 228-444, gnl|fr1|chrUn (15705750-15705982) | |
| 228-444, gnl|galGal2|chrZ (27567009-27567330) | |
| 228-444, gnl|hg17|chr17 (23926255-23926487) | |
| 228-444, gnl|Hg17|chr17 (23926481-23926265) | |
| 228-444, gnl|loxAfr1|scaffold_66389 (1030-1262) | |
| 228-444, gnl|mm7|chr11 (78406407-78406173) | |
| 228-444, gnl|Mm7|chr11 (78406177-78406395) | |
| 228-444, gnl|monDom2|scaffold_44 (14491039-14491271) | |
| 228-444, gnl|oryCun1|scaffold_190404 (77622-77390) | |
| 228-444, gnl|panTro1|chr19_random (12738864-12739096) | |
| 228-444, gnl|rheMac2|chr16 (23770665-23770897) | |
| 228-444, gnl|rn3|chr10 (64324355-64324589) | |
| 228-444, gnl|tetNig1|chr16 (3848079-3847847) | |
| 228-444, gnl|xenTro1|scaffold_50 (1449183-1448952) | |
| 488-668, gnl|bosTau2|chr25 (25400862-25401041) | |
| 488-668, gnl|Hg17|chr16 (29987632-29987810) | |
| 488-668, gnl|Mm7|chr7 (122893322-122893144) | |
| 495-657, gnl|bosTau2|chr19 (13573624-13573462) | |
| 495-657, gnl|canFam2|chr9 (46105974-46106113) | |
| 495-657, gnl|danRer3|chr15 (11965597-11965735) | |
| 495-657, gnl|dasNov1|scaffold_209379 (595-470) | |
| 495-657, gnl|echTel1|scaffold_317923 (5078-5217) | |
| 495-657, gnl|fr1|chrUn (15705349-15705487) | |
| 495-657, gnl|galGal2|chrZ (27566505-27566644) | |
| 495-657, gnl|hg17|chr17 (23925838-23925977) | |
| 495-657, gnl|Hg17|chr17 (23926003-23925841) | |
| 495-657, gnl|loxAfr1|scaffold_5483 (20454-20593) | |
| 495-657, gnl|mm7|chr11 (78406788-78406650) | |
| 495-657, gnl|Mm7|chr11 (78406622-78406784) | |
| 495-657, gnl|monDom2|scaffold_44 (14490512-14490658) | |
| 495-657, gnl|oryCun1|scaffold_190404 (78028-77889) | |
| 495-657, gnl|panTro1|chr19_random (12738447-12738586) | |
| 495-657, gnl|rheMac2|chr16 (23770248-23770387) | |
| 495-657, gnl|rn3|chr10 (64323971-64324109) | |
| 495-657, gnl|tetNig1|chr16 (3848438-3848300) | |
| 495-657, gnl|xenTro1|scaffold_50 (1450042-1449904) | |
| 740-917, gnl|bosTau2|chr19 (13573025-13572848) | |
| 740-917, gnl|Hg17|chr17 (23925392-23925211) | |
| 740-917, gnl|Mm7|chr11 (78407215-78407392) | |
| 1115-1615, gnl|bosTau2|chr19 (13572389-13571889) | |
| 1115-1615, gnl|Hg17|chr17 (23924768-23924265) | |
| 1115-1615, gnl|Mm7|chr11 (78407835-78408331) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| hyp (4.2851) | |
| fbs (1.75346) | |
| fcc (1.58228) | |
| fce (1.35796) | |
| fhi (1.35662) | |
| ebs (0.709807) | |
| ece (0.687916) | |
| jca (0.34188) | |
| cag (0.302389) | |
| eye (0.170503) | |
| eep (0.122564) | |
| med (0.116252) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (4.2851) | |
| fbs (1.75346) | |
| fcc (1.58228) | |
| fce (1.35796) | |
| fhi (1.35662) | |
| ebs (0.709807) | |
| ece (0.687916) | |
| jca (0.34188) | |
| cag (0.302389) | |
| eye (0.170503) | |
| eep (0.122564) | |
| med (0.116252) |