Ss1.1-Tes1-TES01F040038.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
AGTGCTCTTCTGGCTTTTAGAGGAATTCCTATCTCAGAACTGAAGAACCACAGCATCCTC CGGGCCCTGACAGTGGAAGCTAACGGATGGCAGCCAGGTGTTGTGAATACAGAGGTGCTC AGAGCCCAAGAAGAGTGGGAAGCTGTGGACAGCATCCATCCAGAGACAGGGAGCCAGGCC AGCTCAGAGCAGCCTGGGCATCTCGTCTCCTTCAGTGAGGCCCTGCAGCATTTCCAGACC GTGGACCTCTCCTCCTTCAAGAAAAGAATCCAGCCGACGATTCGAAGGACCGGGCTTGCT GCCCTCCGGCACTGCCTCTTTGGGCCTCCAAAGCTCCACCAAGACCTCCGTGAAGAAAGG GACTTGGTCCTGACCATCGCTCAGTGTGGCCTGGATAGCCAAGACCCAATGCATGGCCGA GTCCTGCAGACCATCTACAAGAAGCTGACTGGCTCCAAGTTTGACTGCGCCCTCCACGGA GACCACTGGGAAGATCTGGGCTTTCAGGGAGCAAATCCAGCCACAGACCTGAGAGGAGCA GGCTTCCTTGCCCTCCTGCATCTCCTATACCTGGTGATGGACTCCAAGACCCTGCTGATG GCCCAGGAGATTTTCCGCCTGTCACGTCACCACATCCAGCAATTCCCCTTCTGTGTGATG TCCGTGAATATCACCCGCATCACCATCCAGGCCTTAAGGGAGGAGTGTCTCTCCAGGGAG TGTAACCGGCAGCAGAAGGTGATCCCAGTGGTGAACAGCTTCTACGCCGCCACCTTCCTC CGCCTGGCGCACATCTGGAGGACGCAGCACAAGACCATCTCAGACTCGGGCTTTGTCCTC AAAGATTTGGAGGCGTGGGCCAAGAAGAGCCCCAGGCGGCTGCTCAAGACCCTGGAGATC TACCTGGCTGGCGTGTCAAAGGGACAGGCCTCCTTGTTGGGAGCACAGAAGTGCTCCCGG CCCAGAGCCCCTCACTCCAAGGACCTCACTTTCACGGGTGTGTGTGACCTGCCACCGAAC TCACCCCAGGCCACGTGGCTGATCTGACCAACTCCAGGGGCCACTGGGGATGGAAAGCCT TGAGGGGGGCTCTGGGAGGGCACCCCCGGCTGGGCCACGCCCATTCCAGCCCCAGCAGAA GGATGTAAGGGAGCCCCTGGGCCTGAGGGGAGCCAGGGACCCTCACCTGCATTGGGGGCC CTTAGATTTGACCCAGACCTGGCAGACCTGCCTCCAGGGTTGGGGAAACTTTGCTGTGCT CTTAGTTGGGCTACAGCTTCCAGAGTCGGGTTCCAGGTAAAGTCAGTGACAGTGAACGGG TAACAGGGTGGGAGATCCCATCTGGATGTCCCACACAGCCCTACATGAAAGATATTCCCA AATAGAGGCGCTGGAATCCTGACTCGCTGACAGCCTTGCTTTCAGGCCCCCGGGTCCTTA GAATGTGAAGGGAGCTGCCGGCAGGGGGCCGTGTGAACCTCAGCAGCTGGGCCCGCCTTC TTGTCTGCCCAGCAGCCCCTGTAGGAGGGGGGCTCTGGCTCTGCACTTCCTCCACCTTCA CCCCCTCATTCCTTCCCCCCACGGTGATACAGAACCCAGTGCTGGGCTCGGTGTTGCCAC TGCCCCCACACTAACCGCCCACCAGCTGGGCTTCCCGGTGGAGGCCGCACAGGTCCCGCC CACGGTGGTTTTCTGGCCTGGCTGAGGGAAGGAGGAAATTCACACACCAGCAGTTTTTGA ATAAAAGAATTGTTCCAGGTTAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
AGTGCTCTTCTGGCTTTTAGAGGAATTCCTATCTCAGAACTGAAGAACCACAGCATCCTC CGGGCCCTGACAGTGGAAGCTAACGGATGGCAGCCAGGTGTTGTGAATACAGAGGTGCTC AGAGCCCAAGAAGAGTGGGAAGCTGTGGACAGCATCCATCCAGAGACAGGGAGCCAGGCC AGCTCAGAGCAGCCTGGGCATCTCGTCTCCTTCAGTGAGGCCCTGCAGCATTTCCAGACC GTGGACCTCTCCTCCTTCAAGAAAAGAATCCAGCCGACGATTCGAAGGACCGGGCTTGCT GCCCTCCGGCACTGCCTCTTTGGGCCTCCAAAGCTCCACCAAGACCTCCGTGAAGAAAGG GACTTGGTCCTGACCATCGCTCAGTGTGGCCTGGATAGCCAAGACCCAATGCATGGCCGA GTCCTGCAGACCATCTACAAGAAGCTGACTGGCTCCAAGTTTGACTGCGCCCTCCACGGA GACCACTGGGAAGATCTGGGCTTTCAGGGAGCAAATCCAGCCACAGACCTGAGAGGAGCA GGCTTCCTTGCCCTCCTGCATCTCCTATACCTGGTGATGGACTCCAAGACCCTGCTGATG GCCCAGGAGATTTTCCGCCTGTCACGTCACCACATCCAGCAATTCCCCTTCTGTGTGATG TCCGTGAATATCACCCGCATCACCATCCAGGCCTTAAGGGAGGAGTGTCTCTCCAGGGAG TGTAACCGGCAGCAGAAGGTGATCCCAGTGGTGAACAGCTTCTACGCCGCCACCTTCCTC CGCCTGGCGCACATCTGGAGGACGCAGCACAAGACCATCTCAGACTCGGGCTTTGTCCTC AAAGATTTGGAGGCGTGGGCCAAGAAGAGCCCCAGGCGGCTGCTCAAGACCCTGGAGATC TACCTGGCTGGCGTGTCAAAGGGACAGGCCTCCTTGTTGGGAGCACAGAAGTGCTCCCGG CCCAGAGCCCCTCACTCCAAGGACCTCACTTTCACGGGTGTGTGTGACCTGCCACCGAAC TCACCCCAGGCCACGTGGCTGATCTGACCAACTCCAGGGGCCACTGGGGATGGAAAGCCT TGAGGGGGGCTCTGGGAGGGCACCCCCGGCTGGGCCACGCCCATTCCAGCCCCAGCAGAA GGATGTAAGGGAGCCCCTGGGCCTGAGGGGAGCCAGGGACCCTCACCTGCATTGGGGGCC CTTAGATTTGACCCAGACCTGGCAGACCTGCCTCCAGGGTTGGGGAAACTTTGCTGTGCT CTTAGTTGGGCTACAGCTTCCAGAGTCGGGTTCCAGGTAAAGTCAGTGACAGTGAACGGG TAACAGGGTGGGAGATCCCATCTGGATGTCCCACACAGCCCTACATGAAAGATATTCCCA AATAGAGGCGCTGGAATCCTGACTCGCTGACAGCCTTGCTTTCAGGCCCCCGGGTCCTTA GAATGTGAAGGGAGCTGCCGGCAGGGGGCCGTGTGAACCTCAGCAGCTGGGCCCGCCTTC TTGTCTGCCCAGCAGCCCCTGTAGGAGGGGGGCTCTGGCTCTGCACTTCCTCCACCTTCA CCCCCTCATTCCTTCCCCCCACGGTGATACAGAACCCAGTGCTGGGCTCGGTGTTGCCAC TGCCCCCACACTAACCGCCCACCAGCTGGGCTTCCCGGTGGAGGCCGCACAGGTCCCGCC CACGGTGGTTTTCTGGCCTGGCTGAGGGAAGGAGGAAATTCACACACCAGCAGTTTTTGA ATAAAAGAATTGTTCCAGGTTAAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
843-1041, - strand, RNAz p=0.878538 | |
1106-1214, - strand, RNAz p=0.732445 |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
843-1041, - strand, RNAz p=0.878538 | |
1106-1214, - strand, RNAz p=0.732445 |
Aligned organism(s): 29 entry(ies) | More info |
Aligned organism(s): 29 entry(ies) | Help | Less info |
166-273, gnl|bosTau2|chr11 (34754032-34753925) | |
166-273, gnl|Hg17|chr2 (85508516-85508623) | |
166-273, gnl|Mm7|chr6 (72597649-72597543) | |
386-509, gnl|bosTau2|chr11 (34751745-34751622) | |
386-509, gnl|canFam2|chr17 (42718973-42718814) | |
386-509, gnl|danRer3|chr17 (25566228-25566380) | |
386-509, gnl|dasNov1|scaffold_26888 (17095-16951) | |
386-509, gnl|echTel1|scaffold_287348 (8770-8913) | |
386-509, gnl|galGal2|chrUn (126178502-126178347) | |
386-509, gnl|hg17|chr2 (85510206-85510350) | |
386-509, gnl|Hg17|chr2 (85510221-85510344) | |
386-509, gnl|loxAfr1|scaffold_38565 (5994-5850) | |
386-509, gnl|mm7|chr6 (72595322-72595180) | |
386-509, gnl|Mm7|chr6 (72595307-72595184) | |
386-509, gnl|monDom2|scaffold_68 (9225428-9225573) | |
386-509, gnl|panTro1|chr12 (88374739-88374883) | |
386-509, gnl|rheMac2|chr13 (85935386-85935530) | |
386-509, gnl|rn3|chr4 (106321241-106321097) | |
386-509, gnl|tetNig1|chrUn_random (99471295-99471166) | |
386-509, gnl|xenTro1|scaffold_217 (1512007-1511863) | |
706-842, gnl|bosTau2|chr11 (34735247-34735112) | |
706-842, gnl|Hg17|chr2 (85528909-85529044) | |
706-842, gnl|Mm7|chr6 (72586883-72586748) | |
843-1391, gnl|bosTau2|chr11 (34734638-34734085) | |
843-1391, gnl|Hg17|chr2 (85529539-85530114) | |
843-1391, gnl|Mm7|chr6 (72584796-72584275) | |
1633-1751, gnl|bosTau2|chr11 (34733877-34733757) | |
1633-1751, gnl|Hg17|chr2 (85530365-85530525) | |
1633-1751, gnl|Mm7|chr6 (72584015-72583869) |
Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
166-273, gnl|bosTau2|chr11 (34754032-34753925) | |
166-273, gnl|Hg17|chr2 (85508516-85508623) | |
166-273, gnl|Mm7|chr6 (72597649-72597543) | |
386-509, gnl|bosTau2|chr11 (34751745-34751622) | |
386-509, gnl|canFam2|chr17 (42718973-42718814) | |
386-509, gnl|danRer3|chr17 (25566228-25566380) | |
386-509, gnl|dasNov1|scaffold_26888 (17095-16951) | |
386-509, gnl|echTel1|scaffold_287348 (8770-8913) | |
386-509, gnl|galGal2|chrUn (126178502-126178347) | |
386-509, gnl|hg17|chr2 (85510206-85510350) | |
386-509, gnl|Hg17|chr2 (85510221-85510344) | |
386-509, gnl|loxAfr1|scaffold_38565 (5994-5850) | |
386-509, gnl|mm7|chr6 (72595322-72595180) | |
386-509, gnl|Mm7|chr6 (72595307-72595184) | |
386-509, gnl|monDom2|scaffold_68 (9225428-9225573) | |
386-509, gnl|panTro1|chr12 (88374739-88374883) | |
386-509, gnl|rheMac2|chr13 (85935386-85935530) | |
386-509, gnl|rn3|chr4 (106321241-106321097) | |
386-509, gnl|tetNig1|chrUn_random (99471295-99471166) | |
386-509, gnl|xenTro1|scaffold_217 (1512007-1511863) | |
706-842, gnl|bosTau2|chr11 (34735247-34735112) | |
706-842, gnl|Hg17|chr2 (85528909-85529044) | |
706-842, gnl|Mm7|chr6 (72586883-72586748) | |
843-1391, gnl|bosTau2|chr11 (34734638-34734085) | |
843-1391, gnl|Hg17|chr2 (85529539-85530114) | |
843-1391, gnl|Mm7|chr6 (72584796-72584275) | |
1633-1751, gnl|bosTau2|chr11 (34733877-34733757) | |
1633-1751, gnl|Hg17|chr2 (85530365-85530525) | |
1633-1751, gnl|Mm7|chr6 (72584015-72583869) |
Expressed library(ies): 15 entry(ies) | More info |
Expressed library(ies): 15 entry(ies) | Help | Less info |
cty (0.5204) | |
elu (0.385356) | |
cga (0.279096) | |
eep (0.245128) | |
cly (0.241284) | |
fcc (0.197785) | |
nep (0.183925) | |
mcp (0.170648) | |
fhi (0.169578) | |
fat (0.147427) | |
ski (0.146735) | |
nca (0.136874) | |
cov (0.132153) | |
ese (0.126502) | |
bla (0.124347) |
Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cty (0.5204) | |
elu (0.385356) | |
cga (0.279096) | |
eep (0.245128) | |
cly (0.241284) | |
fcc (0.197785) | |
nep (0.183925) | |
mcp (0.170648) | |
fhi (0.169578) | |
fat (0.147427) | |
ski (0.146735) | |
nca (0.136874) | |
cov (0.132153) | |
ese (0.126502) | |
bla (0.124347) |