Non-Coding RNA Search

Ss1.1-Tes1-TES01F040083.5

Sequence:


               
               CTCCTCCAGACAAGCTGCACTTGCCCTTGAAGGCTGTGAAGACCCGGACCAGGTCTGAAA
CAGCATCTGCCGTAGTGCCATCATGGGAGACATTTTGGGACAGTTCTTCATTTTTGTAGG
GCTGCTGGTGTGCCTGGTTTACCTGGCGAAGTGTGTGCGATTCTGCAAATGTATTTTCCT
GAACTTCTGGAGAGTTTCGCCAAGGTCTTTCTTGATGTCAATGGGACAGTGGGCAGTGAT
CACTGGAGCCGGAGATGGGATTGGGAAAGCTTATTCATTCGAGTTAGCAAGACAGGGACT
CAACGTCGTGCTTATCAGCCGGACACTGGAAAAACTACAGACCATTGCTGCGGAGATTGA
GTGGACGATAGGGACTAGCGTCAAGATTATACAAGCAGATTTTACTAAAGATGACATCTA
TGAAGATATTAAAGAAAAACTTAAAGGCTTAGAAATTGGAATTTTAGTCAACAACGTTGG
GATGCTTCCAAACCTTCTCCCAAGCCATTTCCTTAACACACCAGATAACATCCAGAGTGT
CATCCACTGTAACATCACCTCGGTTGTGAAGATGACACAGCTGATTCTGAAACACATGGA
ATCAAGGCAGAAAGGTCTCATCTTGAACATATCTTCTGGGGTGGCCCTCTTTCCCTGGCC
TCTGTACTCCATGTATTCGTCTTCCAAGGCTTTTGTGTGCACGTTCTCCAAGGCACTGCA
AGCAGAATATGAAGCGAAAGGAATCATTATCCAGGTGCTGACCCCACATGCTGTTTCAAC
CCAAATGACCAACTATCTAAACACCAACATGATAACCAAGACTGCTGATGAGTTTGTTAA
AGAATCATTGAAGTATGTCACGATTGGAGATGAAACCTGTGGCTGCCTCGCCCATGAAAT
CTTGGCGATCATTCTGAGCCTGATCCCATCACGGGTCTTCTACAGCAGCATGTTTCAGAA
GATGGTCCTGACACATTATGTGAAATATCTCAAGCAGAACTTCAACCTCAGATAGGCTGG
GGGCGCTGATGTGCCTTCCAGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTCCAGACAAGCTGCACTTGCCCTTGAAGGCTGTGAAGACCCGGACCAGGTCTGAAA
CAGCATCTGCCGTAGTGCCATCATGGGAGACATTTTGGGACAGTTCTTCATTTTTGTAGG
GCTGCTGGTGTGCCTGGTTTACCTGGCGAAGTGTGTGCGATTCTGCAAATGTATTTTCCT
GAACTTCTGGAGAGTTTCGCCAAGGTCTTTCTTGATGTCAATGGGACAGTGGGCAGTGAT
CACTGGAGCCGGAGATGGGATTGGGAAAGCTTATTCATTCGAGTTAGCAAGACAGGGACT
CAACGTCGTGCTTATCAGCCGGACACTGGAAAAACTACAGACCATTGCTGCGGAGATTGA
GTGGACGATAGGGACTAGCGTCAAGATTATACAAGCAGATTTTACTAAAGATGACATCTA
TGAAGATATTAAAGAAAAACTTAAAGGCTTAGAAATTGGAATTTTAGTCAACAACGTTGG
GATGCTTCCAAACCTTCTCCCAAGCCATTTCCTTAACACACCAGATAACATCCAGAGTGT
CATCCACTGTAACATCACCTCGGTTGTGAAGATGACACAGCTGATTCTGAAACACATGGA
ATCAAGGCAGAAAGGTCTCATCTTGAACATATCTTCTGGGGTGGCCCTCTTTCCCTGGCC
TCTGTACTCCATGTATTCGTCTTCCAAGGCTTTTGTGTGCACGTTCTCCAAGGCACTGCA
AGCAGAATATGAAGCGAAAGGAATCATTATCCAGGTGCTGACCCCACATGCTGTTTCAAC
CCAAATGACCAACTATCTAAACACCAACATGATAACCAAGACTGCTGATGAGTTTGTTAA
AGAATCATTGAAGTATGTCACGATTGGAGATGAAACCTGTGGCTGCCTCGCCCATGAAAT
CTTGGCGATCATTCTGAGCCTGATCCCATCACGGGTCTTCTACAGCAGCATGTTTCAGAA
GATGGTCCTGACACATTATGTGAAATATCTCAAGCAGAACTTCAACCTCAGATAGGCTGG
GGGCGCTGATGTGCCTTCCAGCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32891815|gb|AAP88937.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32891815|gb|AAP88937.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               359-499, gnl|bosTau2|chr8 (45670992-45671131)
               

               
               359-499, gnl|Hg17|chr9 (96094748-96094610)
               

               
               359-499, gnl|Mm7|chr13 (61897221-61897091)
               


               
               753-905, gnl|bosTau2|chr8 (45681519-45681671)
               

               
               753-905, gnl|Hg17|chr9 (96082746-96082594)
               

               
               753-905, gnl|Mm7|chr13 (61882589-61882440)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               359-499, gnl|bosTau2|chr8 (45670992-45671131)
               

               
               359-499, gnl|Hg17|chr9 (96094748-96094610)
               

               
               359-499, gnl|Mm7|chr13 (61897221-61897091)
               


               
               753-905, gnl|bosTau2|chr8 (45681519-45681671)
               

               
               753-905, gnl|Hg17|chr9 (96082746-96082594)
               

               
               753-905, gnl|Mm7|chr13 (61882589-61882440)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lin (0.145603)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)

	359-499, gnl\|bosTau2\|chr8 (45670992-45671131)
	359-499, gnl\|Hg17\|chr9 (96094748-96094610)
	359-499, gnl\|Mm7\|chr13 (61897221-61897091)

	753-905, gnl\|bosTau2\|chr8 (45681519-45681671)
	753-905, gnl\|Hg17\|chr9 (96082746-96082594)
	753-905, gnl\|Mm7\|chr13 (61882589-61882440)