Ss1.1-Tes1-TES01F040101.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGCTCCTATGAGGGCCCTGTCGCCGGTCGGCGATGTCCGGCTGGACCTGTCGCCGCCG CCGCCGCTGCCGGCTGTGAGCGGGTCTCCGGTCGGGTCGTCCGGGCGTCTCATGGCCGCT AGCAGCTCCCTGGTGCCCGACCGGCTGCGCCTGCCGCTGTGTTTCCTCGGCGTCTTTGTC TGCTATTTCTACTATGGGATACTGCAGGAAAAGATAACAAGAGGAAAGTATGGGGAGGGA GCCAAGCAGGAGACGTTCACTTTTGCCTTAACTTTGGTCTTCATCCAGTGTGTGATCAAT GCTGTGTTTGCCAAGATCTTGATCCAGTTTTTTGACACTGCCAGGGTGGATCGGACTCGG AGCTGGCTCTATGCTGCTTGTTCTGTCTCCTATCTGGGCGCCATGGTCTCCAGCAACTCA GCACTACAGTTTGTCAACTACCCAACTCAGGTCCTTGGTAAATCCTGCAAGCCAATCCCA GTCATGCTCCTTGGAGTGACCCTTTTGAGGAAGAAATATCCGATGGCCAAGTACCTGTGC GTGTTGCTAATTGTGGCTGGGGTGGCCCTTTTCATGTACAAACCCAAGAAAGTAGTCGGG ATAGAAGAACACACAGTGGGCTATGGAGAGCTGCTCCTGCTCTTGTCCCTCACCCTGGAT GGCCTGACCGGCGTTTCCCAGGACCACATGCGGGCTCACTACCAAACGGGCTCCAACCAC ATGATGCTGAACATCAACCTCTGGTCAACGTTGCTGCTCGGAGCCGGAATCCTGTTCACT GGGGAGCTCTGGGAGTTCCTGAGCTTTGCCGAAAGGTACCCCACCATCGTCTATAACATC TTGCTCTTTGGCCTGACCAGTGCCCTGGGTCAGAGCTTCATCTTCATGACAGTCGTGTAT TTTGGTCCCCTGACCTGCTCCATCATCACCACAACTCGAAAGTTCTTCACCATTTTGGCC TCTGTGATCCTCTTCGCCAACCCCATCAGCCCCATGCAGTGGGTGGGCACTGTATTGGTA TTCTTGGGTCTCGGTCTTGATGCCAAGTTTGGGAAAGGAACCAAGAAGACATCCCACTAG GAAGAGAGAGACTACCTCCACTCCAAGAATATTTAAGTTATTATCTCAAACAGTGACATC TCTTGGAAAAACGGACACAATAGAGATAAAGGACTAGGTTTCCGTCTGGGTTTTTGGGGT TTTTTTGTTTGTTTGTTTGTTATGTTTTGTTTCGTTTTAAAGGAAGCAAAATCACATATT CTAAAAAAAGCATTTGGATTTTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGCTCCTATGAGGGCCCTGTCGCCGGTCGGCGATGTCCGGCTGGACCTGTCGCCGCCG CCGCCGCTGCCGGCTGTGAGCGGGTCTCCGGTCGGGTCGTCCGGGCGTCTCATGGCCGCT AGCAGCTCCCTGGTGCCCGACCGGCTGCGCCTGCCGCTGTGTTTCCTCGGCGTCTTTGTC TGCTATTTCTACTATGGGATACTGCAGGAAAAGATAACAAGAGGAAAGTATGGGGAGGGA GCCAAGCAGGAGACGTTCACTTTTGCCTTAACTTTGGTCTTCATCCAGTGTGTGATCAAT GCTGTGTTTGCCAAGATCTTGATCCAGTTTTTTGACACTGCCAGGGTGGATCGGACTCGG AGCTGGCTCTATGCTGCTTGTTCTGTCTCCTATCTGGGCGCCATGGTCTCCAGCAACTCA GCACTACAGTTTGTCAACTACCCAACTCAGGTCCTTGGTAAATCCTGCAAGCCAATCCCA GTCATGCTCCTTGGAGTGACCCTTTTGAGGAAGAAATATCCGATGGCCAAGTACCTGTGC GTGTTGCTAATTGTGGCTGGGGTGGCCCTTTTCATGTACAAACCCAAGAAAGTAGTCGGG ATAGAAGAACACACAGTGGGCTATGGAGAGCTGCTCCTGCTCTTGTCCCTCACCCTGGAT GGCCTGACCGGCGTTTCCCAGGACCACATGCGGGCTCACTACCAAACGGGCTCCAACCAC ATGATGCTGAACATCAACCTCTGGTCAACGTTGCTGCTCGGAGCCGGAATCCTGTTCACT GGGGAGCTCTGGGAGTTCCTGAGCTTTGCCGAAAGGTACCCCACCATCGTCTATAACATC TTGCTCTTTGGCCTGACCAGTGCCCTGGGTCAGAGCTTCATCTTCATGACAGTCGTGTAT TTTGGTCCCCTGACCTGCTCCATCATCACCACAACTCGAAAGTTCTTCACCATTTTGGCC TCTGTGATCCTCTTCGCCAACCCCATCAGCCCCATGCAGTGGGTGGGCACTGTATTGGTA TTCTTGGGTCTCGGTCTTGATGCCAAGTTTGGGAAAGGAACCAAGAAGACATCCCACTAG GAAGAGAGAGACTACCTCCACTCCAAGAATATTTAAGTTATTATCTCAAACAGTGACATC TCTTGGAAAAACGGACACAATAGAGATAAAGGACTAGGTTTCCGTCTGGGTTTTTGGGGT TTTTTTGTTTGTTTGTTTGTTATGTTTTGTTTCGTTTTAAAGGAAGCAAAATCACATATT CTAAAAAAAGCATTTGGATTTTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1027-1145, - strand, RNAz p=0.632153 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1027-1145, - strand, RNAz p=0.632153 |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 1-215, gnl|bosTau2|chr19 (29680518-29680729) | |
| 1-215, gnl|Hg17|chr17 (45140314-45140091) | |
| 1-215, gnl|Mm7|chr11 (95493932-95494152) | |
| 216-319, gnl|bosTau2|chr19 (29681500-29681603) | |
| 216-319, gnl|canFam2|chr9 (29099306-29099458) | |
| 216-319, gnl|dasNov1|scaffold_2789 (39507-39659) | |
| 216-319, gnl|echTel1|scaffold_290748 (119928-120079) | |
| 216-319, gnl|fr1|chrUn (140040203-140040338) | |
| 216-319, gnl|galGal2|chrUn (84994934-84995081) | |
| 216-319, gnl|hg17|chr17 (45139291-45139443) | |
| 216-319, gnl|Hg17|chr17 (45139429-45139326) | |
| 216-319, gnl|loxAfr1|scaffold_146211 (449-600) | |
| 216-319, gnl|mm7|chr11 (95494976-95494829) | |
| 216-319, gnl|Mm7|chr11 (95494840-95494943) | |
| 216-319, gnl|monDom2|scaffold_18 (43950893-43950753) | |
| 216-319, gnl|panTro1|chr19_random (30745549-30745701) | |
| 216-319, gnl|rheMac2|chr16 (33939983-33940135) | |
| 216-319, gnl|rn3|chr10 (84085269-84085122) | |
| 216-319, gnl|tetNig1|chr3 (13626508-13626632) | |
| 216-319, gnl|xenTro1|scaffold_1185 (26313-26457) | |
| 320-452, gnl|bosTau2|chr19 (29682176-29682308) | |
| 320-452, gnl|canFam2|chr9 (29098649-29098794) | |
| 320-452, gnl|danRer3|chr3 (12220852-12220718) | |
| 320-452, gnl|dasNov1|scaffold_2789 (38811-38956) | |
| 320-452, gnl|echTel1|scaffold_290748 (119289-119434) | |
| 320-452, gnl|fr1|chrUn (140040003-140040144) | |
| 320-452, gnl|galGal2|chrUn (84994729-84994872) | |
| 320-452, gnl|hg17|chr17 (45138564-45138709) | |
| 320-452, gnl|Hg17|chr17 (45138695-45138563) | |
| 320-452, gnl|mm7|chr11 (95495658-95495513) | |
| 320-452, gnl|Mm7|chr11 (95495525-95495657) | |
| 320-452, gnl|monDom2|scaffold_18 (43951628-43951483) | |
| 320-452, gnl|panTro1|chr19_random (30744817-30744962) | |
| 320-452, gnl|rheMac2|chr16 (33939265-33939410) | |
| 320-452, gnl|rn3|chr10 (84085950-84085805) | |
| 320-452, gnl|tetNig1|chr3 (13626309-13626454) | |
| 320-452, gnl|xenTro1|scaffold_1185 (22432-22578) | |
| 480-639, gnl|bosTau2|chr19 (29683208-29683367) | |
| 480-639, gnl|canFam2|chr9 (29097594-29097790) | |
| 480-639, gnl|danRer3|chr3 (12224589-12224407) | |
| 480-639, gnl|dasNov1|scaffold_2789 (37789-37985) | |
| 480-639, gnl|echTel1|scaffold_280467 (4697-4889) | |
| 480-639, gnl|fr1|chrUn (140039196-140039355) | |
| 480-639, gnl|galGal2|chrUn (84994074-84994267) | |
| 480-639, gnl|hg17|chr17 (45137473-45137671) | |
| 480-639, gnl|Hg17|chr17 (45137644-45137485) | |
| 480-639, gnl|loxAfr1|scaffold_1346 (28377-28575) | |
| 480-639, gnl|mm7|chr11 (95496980-95496776) | |
| 480-639, gnl|Mm7|chr11 (95496807-95496966) | |
| 480-639, gnl|monDom2|scaffold_18 (43952891-43952692) | |
| 480-639, gnl|panTro1|chr19_random (30743720-30743918) | |
| 480-639, gnl|rn3|chr10 (84087338-84087139) | |
| 480-639, gnl|tetNig1|chr3 (13625476-13625635) | |
| 480-639, gnl|xenTro1|scaffold_1185 (18586-18782) | |
| 766-873, gnl|bosTau2|chr19 (29686030-29686137) | |
| 766-873, gnl|canFam2|chr9 (29095556-29095729) | |
| 766-873, gnl|danRer3|chr3 (12231136-12230983) | |
| 766-873, gnl|dasNov1|scaffold_2789 (35382-35577) | |
| 766-873, gnl|echTel1|scaffold_280467 (2015-2200) | |
| 766-873, gnl|fr1|chrUn (140037569-140037696) | |
| 766-873, gnl|galGal2|chrUn (84993145-84993402) | |
| 766-873, gnl|hg17|chr17 (45135497-45135703) | |
| 766-873, gnl|Hg17|chr17 (45135656-45135549) | |
| 766-873, gnl|loxAfr1|scaffold_1346 (26379-26541) | |
| 766-873, gnl|mm7|chr11 (95499470-95499288) | |
| 766-873, gnl|Mm7|chr11 (95499316-95499423) | |
| 766-873, gnl|monDom2|scaffold_18 (43954669-43954514) | |
| 766-873, gnl|oryCun1|scaffold_200549 (106910-107081) | |
| 766-873, gnl|panTro1|chr19_random (30741760-30741966) | |
| 766-873, gnl|rheMac2|chr16 (33936227-33936428) | |
| 766-873, gnl|rn3|chr10 (84089928-84089745) | |
| 766-873, gnl|tetNig1|chr3 (13623975-13624122) | |
| 766-873, gnl|xenTro1|scaffold_1185 (16155-16344) | |
| 1027-1284, gnl|bosTau2|chr19 (29687107-29687343) | |
| 1027-1284, gnl|Hg17|chr17 (45133872-45133652) | |
| 1027-1284, gnl|Mm7|chr11 (95500526-95500756) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-215, gnl|bosTau2|chr19 (29680518-29680729) | |
| 1-215, gnl|Hg17|chr17 (45140314-45140091) | |
| 1-215, gnl|Mm7|chr11 (95493932-95494152) | |
| 216-319, gnl|bosTau2|chr19 (29681500-29681603) | |
| 216-319, gnl|canFam2|chr9 (29099306-29099458) | |
| 216-319, gnl|dasNov1|scaffold_2789 (39507-39659) | |
| 216-319, gnl|echTel1|scaffold_290748 (119928-120079) | |
| 216-319, gnl|fr1|chrUn (140040203-140040338) | |
| 216-319, gnl|galGal2|chrUn (84994934-84995081) | |
| 216-319, gnl|hg17|chr17 (45139291-45139443) | |
| 216-319, gnl|Hg17|chr17 (45139429-45139326) | |
| 216-319, gnl|loxAfr1|scaffold_146211 (449-600) | |
| 216-319, gnl|mm7|chr11 (95494976-95494829) | |
| 216-319, gnl|Mm7|chr11 (95494840-95494943) | |
| 216-319, gnl|monDom2|scaffold_18 (43950893-43950753) | |
| 216-319, gnl|panTro1|chr19_random (30745549-30745701) | |
| 216-319, gnl|rheMac2|chr16 (33939983-33940135) | |
| 216-319, gnl|rn3|chr10 (84085269-84085122) | |
| 216-319, gnl|tetNig1|chr3 (13626508-13626632) | |
| 216-319, gnl|xenTro1|scaffold_1185 (26313-26457) | |
| 320-452, gnl|bosTau2|chr19 (29682176-29682308) | |
| 320-452, gnl|canFam2|chr9 (29098649-29098794) | |
| 320-452, gnl|danRer3|chr3 (12220852-12220718) | |
| 320-452, gnl|dasNov1|scaffold_2789 (38811-38956) | |
| 320-452, gnl|echTel1|scaffold_290748 (119289-119434) | |
| 320-452, gnl|fr1|chrUn (140040003-140040144) | |
| 320-452, gnl|galGal2|chrUn (84994729-84994872) | |
| 320-452, gnl|hg17|chr17 (45138564-45138709) | |
| 320-452, gnl|Hg17|chr17 (45138695-45138563) | |
| 320-452, gnl|mm7|chr11 (95495658-95495513) | |
| 320-452, gnl|Mm7|chr11 (95495525-95495657) | |
| 320-452, gnl|monDom2|scaffold_18 (43951628-43951483) | |
| 320-452, gnl|panTro1|chr19_random (30744817-30744962) | |
| 320-452, gnl|rheMac2|chr16 (33939265-33939410) | |
| 320-452, gnl|rn3|chr10 (84085950-84085805) | |
| 320-452, gnl|tetNig1|chr3 (13626309-13626454) | |
| 320-452, gnl|xenTro1|scaffold_1185 (22432-22578) | |
| 480-639, gnl|bosTau2|chr19 (29683208-29683367) | |
| 480-639, gnl|canFam2|chr9 (29097594-29097790) | |
| 480-639, gnl|danRer3|chr3 (12224589-12224407) | |
| 480-639, gnl|dasNov1|scaffold_2789 (37789-37985) | |
| 480-639, gnl|echTel1|scaffold_280467 (4697-4889) | |
| 480-639, gnl|fr1|chrUn (140039196-140039355) | |
| 480-639, gnl|galGal2|chrUn (84994074-84994267) | |
| 480-639, gnl|hg17|chr17 (45137473-45137671) | |
| 480-639, gnl|Hg17|chr17 (45137644-45137485) | |
| 480-639, gnl|loxAfr1|scaffold_1346 (28377-28575) | |
| 480-639, gnl|mm7|chr11 (95496980-95496776) | |
| 480-639, gnl|Mm7|chr11 (95496807-95496966) | |
| 480-639, gnl|monDom2|scaffold_18 (43952891-43952692) | |
| 480-639, gnl|panTro1|chr19_random (30743720-30743918) | |
| 480-639, gnl|rn3|chr10 (84087338-84087139) | |
| 480-639, gnl|tetNig1|chr3 (13625476-13625635) | |
| 480-639, gnl|xenTro1|scaffold_1185 (18586-18782) | |
| 766-873, gnl|bosTau2|chr19 (29686030-29686137) | |
| 766-873, gnl|canFam2|chr9 (29095556-29095729) | |
| 766-873, gnl|danRer3|chr3 (12231136-12230983) | |
| 766-873, gnl|dasNov1|scaffold_2789 (35382-35577) | |
| 766-873, gnl|echTel1|scaffold_280467 (2015-2200) | |
| 766-873, gnl|fr1|chrUn (140037569-140037696) | |
| 766-873, gnl|galGal2|chrUn (84993145-84993402) | |
| 766-873, gnl|hg17|chr17 (45135497-45135703) | |
| 766-873, gnl|Hg17|chr17 (45135656-45135549) | |
| 766-873, gnl|loxAfr1|scaffold_1346 (26379-26541) | |
| 766-873, gnl|mm7|chr11 (95499470-95499288) | |
| 766-873, gnl|Mm7|chr11 (95499316-95499423) | |
| 766-873, gnl|monDom2|scaffold_18 (43954669-43954514) | |
| 766-873, gnl|oryCun1|scaffold_200549 (106910-107081) | |
| 766-873, gnl|panTro1|chr19_random (30741760-30741966) | |
| 766-873, gnl|rheMac2|chr16 (33936227-33936428) | |
| 766-873, gnl|rn3|chr10 (84089928-84089745) | |
| 766-873, gnl|tetNig1|chr3 (13623975-13624122) | |
| 766-873, gnl|xenTro1|scaffold_1185 (16155-16344) | |
| 1027-1284, gnl|bosTau2|chr19 (29687107-29687343) | |
| 1027-1284, gnl|Hg17|chr17 (45133872-45133652) | |
| 1027-1284, gnl|Mm7|chr11 (95500526-95500756) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| sin (0.524843) | |
| nco (0.485201) | |
| duo (0.345602) | |
| csp (0.322373) | |
| lyg (0.266205) | |
| cov (0.264306) | |
| sug (0.254582) | |
| eep (0.245128) | |
| cbe (0.239234) | |
| mas (0.210305) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| cje (0.165235) | |
| fat (0.147427) | |
| lin (0.145603) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ret (0.128733) | |
| cly (0.120642) | |
| clu (0.119646) | |
| med (0.116252) | |
| spc (0.113366) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.524843) | |
| nco (0.485201) | |
| duo (0.345602) | |
| csp (0.322373) | |
| lyg (0.266205) | |
| cov (0.264306) | |
| sug (0.254582) | |
| eep (0.245128) | |
| cbe (0.239234) | |
| mas (0.210305) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| cje (0.165235) | |
| fat (0.147427) | |
| lin (0.145603) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ret (0.128733) | |
| cly (0.120642) | |
| clu (0.119646) | |
| med (0.116252) | |
| spc (0.113366) | |
| jej (0.0989218) | |
| eje (0.0988338) |