Non-Coding RNA Search

Ss1.1-Tes1-TES01F060061.5

Sequence:


               
               GGCCCGCAGGGCGTTGTAGCTGGACACCCAGCTCTCGTGGTCCACGCTGCCCNTGCAGCC
CACCACCTTCACCCACTCCGGGTTCTCGTTCAGCACCTCCCCCGTGGCGGTGGTCCACTC
CTTGCCCAGGCCGCCCACATACAGGTGCTCGTCCTTCACAGCCAACCACTCGGCTTTGAA
GCCTTTCCCCACGGTCCCGTCGCCGTCGGGCAGAATCACCCAGGGCACGGCCCTGGAGCC
CTCGATCTGGTAGATAACCCCTGTCCGGTCGTCCACGGAGTAGAGCTTCCCATTGAAGAC
GATCAGGTCCGACAGCTCCATGCCCCGCCCCTTTTCCGCCAGGTGGGACTCCAGGACCCC
GTGGCCTTGGTCCCACTCCACGGCCACCCTGTCCCCACTGTCAGACAGGGTCAGATAGCC
CTTCTTCAGGTAACTGACCCAGGTGTTCTCCTCCTGGGCCCTCGACTCCGTGTCCAGGTC
AGCGATGACAGCGATCCGGTACCGAGTCCCCCCTGGCGTTCTCTGGGGGGCAGACAGAGG
GTAGGTGTCATTGTACCGGTCCGTGGGCGCCTGGCCCAGCCTCCAGTTGTGGGCGTTGGG
TGCAGGGGGCCGGCCGGGGGGCGGGCGGTGGGCGTAGAGCAGCCAGAGGACAGCGGCACC
CAGGAAGGACGGCAGGATCACCTTCCAGCGGGGGCGGAAGCGGGGGTCTGCGGCCTTGGT
CATGGACGCCAGCACGGGAAGGCCCCCCACGCTGATCCGGAGCGAGTGCATAGACTCATT
CCATTCCAGGGGGGTGGAGGGCTGGGCGGGCATCAGACTGAAGGGCAGGCGGGACCCGGT
GCGGGCGGCTCCGGGGCCCGCGGACAGCGGGGCCTCGCTGCGGAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCGCAGGGCGTTGTAGCTGGACACCCAGCTCTCGTGGTCCACGCTGCCCNTGCAGCC
CACCACCTTCACCCACTCCGGGTTCTCGTTCAGCACCTCCCCCGTGGCGGTGGTCCACTC
CTTGCCCAGGCCGCCCACATACAGGTGCTCGTCCTTCACAGCCAACCACTCGGCTTTGAA
GCCTTTCCCCACGGTCCCGTCGCCGTCGGGCAGAATCACCCAGGGCACGGCCCTGGAGCC
CTCGATCTGGTAGATAACCCCTGTCCGGTCGTCCACGGAGTAGAGCTTCCCATTGAAGAC
GATCAGGTCCGACAGCTCCATGCCCCGCCCCTTTTCCGCCAGGTGGGACTCCAGGACCCC
GTGGCCTTGGTCCCACTCCACGGCCACCCTGTCCCCACTGTCAGACAGGGTCAGATAGCC
CTTCTTCAGGTAACTGACCCAGGTGTTCTCCTCCTGGGCCCTCGACTCCGTGTCCAGGTC
AGCGATGACAGCGATCCGGTACCGAGTCCCCCCTGGCGTTCTCTGGGGGGCAGACAGAGG
GTAGGTGTCATTGTACCGGTCCGTGGGCGCCTGGCCCAGCCTCCAGTTGTGGGCGTTGGG
TGCAGGGGGCCGGCCGGGGGGCGGGCGGTGGGCGTAGAGCAGCCAGAGGACAGCGGCACC
CAGGAAGGACGGCAGGATCACCTTCCAGCGGGGGCGGAAGCGGGGGTCTGCGGCCTTGGT
CATGGACGCCAGCACGGGAAGGCCCCCCACGCTGATCCGGAGCGAGTGCATAGACTCATT
CCATTCCAGGGGGGTGGAGGGCTGGGCGGGCATCAGACTGAAGGGCAGGCGGGACCCGGT
GCGGGCGGCTCCGGGGCCCGCGGACAGCGGGGCCTCGCTGCGGAAAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12839734|dbj|BAB24655.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12839734|dbj|BAB24655.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               221-500, - strand, RNAz p=0.993672
               

               
               319-475, - strand, RNAz p=0.840254

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               221-500, - strand, RNAz p=0.993672
               

               
               319-475, - strand, RNAz p=0.840254

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               182-836, gnl|bosTau2|chr19 (46251948-46252601)
               

               
               182-836, gnl|canFam2|chr9 (5435942-5435468)
               

               
               182-836, gnl|danRer3|chr1 (38807001-38806495)
               

               
               182-836, gnl|echTel1|scaffold_112364 (633-1112)
               

               
               182-836, gnl|fr1|chrUn (91822165-91821682)
               

               
               182-836, gnl|galGal2|chrUn (103112357-103111888)
               

               
               182-836, gnl|hg17|chr17 (74504659-74505133)
               

               
               182-836, gnl|Hg17|chr17 (74504668-74505322)
               

               
               182-836, gnl|loxAfr1|scaffold_68484 (1110-636)
               

               
               182-836, gnl|mm7|chr11 (118519888-118520368)
               

               
               182-836, gnl|Mm7|chr11 (118519897-118520557)
               

               
               182-836, gnl|monDom2|scaffold_18 (8489482-8489969)
               

               
               182-836, gnl|panTro1|chr19 (78070140-78070615)
               

               
               182-836, gnl|rheMac2|chr16 (74254585-74255059)
               

               
               182-836, gnl|rn3|chr10 (108425272-108425752)
               

               
               182-836, gnl|tetNig1|chr3 (10281781-10281305)
               

               
               182-836, gnl|xenTro1|scaffold_92 (1047929-1047456)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               182-836, gnl|bosTau2|chr19 (46251948-46252601)
               

               
               182-836, gnl|canFam2|chr9 (5435942-5435468)
               

               
               182-836, gnl|danRer3|chr1 (38807001-38806495)
               

               
               182-836, gnl|echTel1|scaffold_112364 (633-1112)
               

               
               182-836, gnl|fr1|chrUn (91822165-91821682)
               

               
               182-836, gnl|galGal2|chrUn (103112357-103111888)
               

               
               182-836, gnl|hg17|chr17 (74504659-74505133)
               

               
               182-836, gnl|Hg17|chr17 (74504668-74505322)
               

               
               182-836, gnl|loxAfr1|scaffold_68484 (1110-636)
               

               
               182-836, gnl|mm7|chr11 (118519888-118520368)
               

               
               182-836, gnl|Mm7|chr11 (118519897-118520557)
               

               
               182-836, gnl|monDom2|scaffold_18 (8489482-8489969)
               

               
               182-836, gnl|panTro1|chr19 (78070140-78070615)
               

               
               182-836, gnl|rheMac2|chr16 (74254585-74255059)
               

               
               182-836, gnl|rn3|chr10 (108425272-108425752)
               

               
               182-836, gnl|tetNig1|chr3 (10281781-10281305)
               

               
               182-836, gnl|xenTro1|scaffold_92 (1047929-1047456)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               cty (0.10408)

	221-500, - strand, RNAz p=0.993672
	319-475, - strand, RNAz p=0.840254

	182-836, gnl\|bosTau2\|chr19 (46251948-46252601)
	182-836, gnl\|canFam2\|chr9 (5435942-5435468)
	182-836, gnl\|danRer3\|chr1 (38807001-38806495)
	182-836, gnl\|echTel1\|scaffold_112364 (633-1112)
	182-836, gnl\|fr1\|chrUn (91822165-91821682)
	182-836, gnl\|galGal2\|chrUn (103112357-103111888)
	182-836, gnl\|hg17\|chr17 (74504659-74505133)
	182-836, gnl\|Hg17\|chr17 (74504668-74505322)
	182-836, gnl\|loxAfr1\|scaffold_68484 (1110-636)
	182-836, gnl\|mm7\|chr11 (118519888-118520368)
	182-836, gnl\|Mm7\|chr11 (118519897-118520557)
	182-836, gnl\|monDom2\|scaffold_18 (8489482-8489969)
	182-836, gnl\|panTro1\|chr19 (78070140-78070615)
	182-836, gnl\|rheMac2\|chr16 (74254585-74255059)
	182-836, gnl\|rn3\|chr10 (108425272-108425752)
	182-836, gnl\|tetNig1\|chr3 (10281781-10281305)
	182-836, gnl\|xenTro1\|scaffold_92 (1047929-1047456)