Ss1.1-Tes1-TES01F080001.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTACGCCGCACAGCAGCAACCAGATTCTTTGGGTTGCGGTTCCTCTCGGCTTTTGCGAAG ATGCAGCTCAAACCGATGGAGATTAACCCGGAGATGCTGAACAAAGTGCTGACAAGGCTC GGGGTCGCCGGCCATTGGCGCTTCGCGGACGTGCTGGGACTGGAGGAGGAGTCTTTGGGC TCGGTGCCAGCACCTGCTTGCGCGCTGCTGCTGCTCTTTCCCCTCACGGCCCAGCATGAG AACTTCAGGAAAAAACAGATTGAAGAGCTGAAGGGACAAGAAGTCAGTCCTAAGGTGTAC TTTATGAAGCAGACCATTGGCAACTCCTGTGGCACCATCGGGCTTATACATGCAGTAGCC AATAATCAGGACAAACTGGAGTTTGAGGATGGATCGGTTCTGAAACAGTTTCTTTCTGAA ACAGAGAAGTTGTCTCCGGAAGACAGAGCAAAATGCTTTGAAAAGAATGAGGCTATCCAG GCTGCCCATGATGCTGTGGCCCAGGAGGGACAGTGCCGGGTAGATGACAAAGTGAACTTT CATTTTATTCTGTTTAACAACGTGGATGGCCACCTCTATGAACTTGATGGTCGGATGCCT TTTCCGGTGAACCATGGCGCCAGCTCAGAGGACTCGCTGCTGCAGGACGCCGCCAAGGTC TGCAGAGAATTCACTGAGCGTGAGCAAGGCGAGGTCCGCTTCTCGGCCGTGGCGCTCTGC AAGGCGGCCTAATGCCCAGTGCGGGCCCTTCGCTTTATCCCCGTTCTCCCTCCATGGTGA AAAGTATATCCCTTCCTATGCGGTCTACACTGCTTCAGTACCCGTAGAGCACAGCTGTCT CCTTGGGGTCTGCAGATAAGCGCTTCCCCTCAGCCATGCCCACGCCCCTTGCCGAGCTCA GCTGTCGATGGAGCAAGTTGGATGTTGGCCTCTGATGGCAAAGCGTTCCCCTCACTGTGT GTCTTGTGCCTCAATATCTAATGCTTTAACGGCTACTTTGGTTTGTGTCTGTGACTTTAA GGCCTTTGGATGTGGTTTAATTGTTCTTAAAAGGAATAAAACTTTTCTGCTGATAAGGAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTACGCCGCACAGCAGCAACCAGATTCTTTGGGTTGCGGTTCCTCTCGGCTTTTGCGAAG ATGCAGCTCAAACCGATGGAGATTAACCCGGAGATGCTGAACAAAGTGCTGACAAGGCTC GGGGTCGCCGGCCATTGGCGCTTCGCGGACGTGCTGGGACTGGAGGAGGAGTCTTTGGGC TCGGTGCCAGCACCTGCTTGCGCGCTGCTGCTGCTCTTTCCCCTCACGGCCCAGCATGAG AACTTCAGGAAAAAACAGATTGAAGAGCTGAAGGGACAAGAAGTCAGTCCTAAGGTGTAC TTTATGAAGCAGACCATTGGCAACTCCTGTGGCACCATCGGGCTTATACATGCAGTAGCC AATAATCAGGACAAACTGGAGTTTGAGGATGGATCGGTTCTGAAACAGTTTCTTTCTGAA ACAGAGAAGTTGTCTCCGGAAGACAGAGCAAAATGCTTTGAAAAGAATGAGGCTATCCAG GCTGCCCATGATGCTGTGGCCCAGGAGGGACAGTGCCGGGTAGATGACAAAGTGAACTTT CATTTTATTCTGTTTAACAACGTGGATGGCCACCTCTATGAACTTGATGGTCGGATGCCT TTTCCGGTGAACCATGGCGCCAGCTCAGAGGACTCGCTGCTGCAGGACGCCGCCAAGGTC TGCAGAGAATTCACTGAGCGTGAGCAAGGCGAGGTCCGCTTCTCGGCCGTGGCGCTCTGC AAGGCGGCCTAATGCCCAGTGCGGGCCCTTCGCTTTATCCCCGTTCTCCCTCCATGGTGA AAAGTATATCCCTTCCTATGCGGTCTACACTGCTTCAGTACCCGTAGAGCACAGCTGTCT CCTTGGGGTCTGCAGATAAGCGCTTCCCCTCAGCCATGCCCACGCCCCTTGCCGAGCTCA GCTGTCGATGGAGCAAGTTGGATGTTGGCCTCTGATGGCAAAGCGTTCCCCTCACTGTGT GTCTTGTGCCTCAATATCTAATGCTTTAACGGCTACTTTGGTTTGTGTCTGTGACTTTAA GGCCTTTGGATGTGGTTTAATTGTTCTTAAAAGGAATAAAACTTTTCTGCTGATAAGGAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 232-383, gnl|bosTau2|chr6 (16208773-16208924) | |
| 232-383, gnl|canFam2|chr3 (74233523-74233355) | |
| 232-383, gnl|danRer3|chr15 (41593120-41593296) | |
| 232-383, gnl|dasNov1|scaffold_34216 (8947-9063) | |
| 232-383, gnl|dasNov1|scaffold_34216 (8949-9060) | |
| 232-383, gnl|echTel1|scaffold_286943 (190545-190709) | |
| 232-383, gnl|echTel1|scaffold_307318 (3179-3336) | |
| 232-383, gnl|fr1|chrUn (18826568-18826416) | |
| 232-383, gnl|galGal2|chr4 (69117500-69117332) | |
| 232-383, gnl|hg17|chr11 (56019961-56020117) | |
| 232-383, gnl|hg17|chr4 (41103590-41103760) | |
| 232-383, gnl|Hg17|chr4 (41103589-41103740) | |
| 232-383, gnl|loxAfr1|scaffold_3613 (111847-112003) | |
| 232-383, gnl|loxAfr1|scaffold_3613 (111850-112020) | |
| 232-383, gnl|mm7|chr5 (66035184-66035350) | |
| 232-383, gnl|Mm7|chr5 (66035183-66035334) | |
| 232-383, gnl|monDom2|scaffold_26 (6610869-6611043) | |
| 232-383, gnl|oryCun1|scaffold_212214 (17521-17364) | |
| 232-383, gnl|oryCun1|scaffold_212214 (17518-17366) | |
| 232-383, gnl|panTro1|chr3 (43785939-43786109) | |
| 232-383, gnl|panTro1|chr9 (56890718-56890874) | |
| 232-383, gnl|rheMac2|chr5 (36303970-36304129) | |
| 232-383, gnl|rheMac2|chr5 (36303973-36304143) | |
| 232-383, gnl|rn3|chr14 (44123912-44123756) | |
| 232-383, gnl|rn3|chr14 (44123909-44123746) | |
| 232-383, gnl|tetNig1|chr18 (7583180-7583030) | |
| 232-383, gnl|xenTro1|scaffold_84 (1428433-1428272) | |
| 643-1077, gnl|bosTau2|chr6 (16216457-16216878) | |
| 643-1077, gnl|Hg17|chr4 (41110929-41111371) | |
| 643-1077, gnl|Mm7|chr5 (66042363-66042749) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 232-383, gnl|bosTau2|chr6 (16208773-16208924) | |
| 232-383, gnl|canFam2|chr3 (74233523-74233355) | |
| 232-383, gnl|danRer3|chr15 (41593120-41593296) | |
| 232-383, gnl|dasNov1|scaffold_34216 (8947-9063) | |
| 232-383, gnl|dasNov1|scaffold_34216 (8949-9060) | |
| 232-383, gnl|echTel1|scaffold_286943 (190545-190709) | |
| 232-383, gnl|echTel1|scaffold_307318 (3179-3336) | |
| 232-383, gnl|fr1|chrUn (18826568-18826416) | |
| 232-383, gnl|galGal2|chr4 (69117500-69117332) | |
| 232-383, gnl|hg17|chr11 (56019961-56020117) | |
| 232-383, gnl|hg17|chr4 (41103590-41103760) | |
| 232-383, gnl|Hg17|chr4 (41103589-41103740) | |
| 232-383, gnl|loxAfr1|scaffold_3613 (111847-112003) | |
| 232-383, gnl|loxAfr1|scaffold_3613 (111850-112020) | |
| 232-383, gnl|mm7|chr5 (66035184-66035350) | |
| 232-383, gnl|Mm7|chr5 (66035183-66035334) | |
| 232-383, gnl|monDom2|scaffold_26 (6610869-6611043) | |
| 232-383, gnl|oryCun1|scaffold_212214 (17521-17364) | |
| 232-383, gnl|oryCun1|scaffold_212214 (17518-17366) | |
| 232-383, gnl|panTro1|chr3 (43785939-43786109) | |
| 232-383, gnl|panTro1|chr9 (56890718-56890874) | |
| 232-383, gnl|rheMac2|chr5 (36303970-36304129) | |
| 232-383, gnl|rheMac2|chr5 (36303973-36304143) | |
| 232-383, gnl|rn3|chr14 (44123912-44123756) | |
| 232-383, gnl|rn3|chr14 (44123909-44123746) | |
| 232-383, gnl|tetNig1|chr18 (7583180-7583030) | |
| 232-383, gnl|xenTro1|scaffold_84 (1428433-1428272) | |
| 643-1077, gnl|bosTau2|chr6 (16216457-16216878) | |
| 643-1077, gnl|Hg17|chr4 (41110929-41111371) | |
| 643-1077, gnl|Mm7|chr5 (66042363-66042749) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| ebs (2.48433) | |
| ecc (1.9556) | |
| fbs (1.92881) | |
| cov (1.85014) | |
| ece (1.83444) | |
| fcc (1.78006) | |
| hyp (1.71404) | |
| fhi (1.18704) | |
| elu (1.15607) | |
| fce (0.814775) | |
| pgl (0.592417) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| cty (0.20816) | |
| cmu (0.186393) | |
| ton (0.1755) | |
| eye (0.170503) | |
| cag (0.151194) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| cbr (0.127975) | |
| bla (0.124347) | |
| eje (0.0988338) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (2.48433) | |
| ecc (1.9556) | |
| fbs (1.92881) | |
| cov (1.85014) | |
| ece (1.83444) | |
| fcc (1.78006) | |
| hyp (1.71404) | |
| fhi (1.18704) | |
| elu (1.15607) | |
| fce (0.814775) | |
| pgl (0.592417) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| cty (0.20816) | |
| cmu (0.186393) | |
| ton (0.1755) | |
| eye (0.170503) | |
| cag (0.151194) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| cbr (0.127975) | |
| bla (0.124347) | |
| eje (0.0988338) |