Non-Coding RNA Search

Ss1.1-Tes1-TES01F080015.5

Sequence:


               
               CCCGCAGGGACCTCTGGCCTGGCTACCAGACTGTTCCTCAGCGGGGAATGGGGAAGATCC
TTTGAAACTCAGCTTCGGGAGTTGAGGATCAAGCTGCTTTGCACCCAAAGGTGGATTTGG
GGCCTGGCATCCCCTCTTCGCCCGGGGCGGGCTCTGCCCCATCCTATTTCTCCTGCTTGA
GATGGGCTCAGCCAAGAGCGTCCCAGTCACTCCAGCGCGGCCTCCGCCGCACAACAAGCT
TCTGGCTCGAGTAGCGGACCCCCGTTCACCCAGCGCCGGCATCCAACGCACTCCCATCCA
GGTAGAGAGCTCTCCACAGCCAAACCTGCCTTCAGGGGAGCAGCTGGAGGGTCCTAAGCA
GGCCCAGGACACAGATCCCCGCTCTCCTACCCTTGGCATTGCACGGACACCCATGAAGAC
CAGCAGCGGAGAGCTCCAAAGCCCACTGGTGAAACAGCTGAGTGATGTATTTGAGACGGA
AGACCCCAAGTCAAATCTTCCCCCAGAACCTATTCTGCCCCTGGAGACACTGTCATCTTC
TGAACTGGACTTGCCTCTGGGCACCCGGTTTTCCCTTGAGGACCAGATGCCACCTTGGAG
CCACAGTGAGCTCCCCTCCAAGCAGATGCTTTCCAAGGAGGAAACAGGACAGCCCTCAGA
AACCCCTGTGGCCAGCCAGGGCTCCGACAAGCCCTTGAGAGACCCCGAGACGCCTAGATC
TTCAGGTTCTAAGTGCAGCAGACGGAAACCAAACGGCAAAGTGCTAGGAAGATCTCCTCT
CACCATCCTGCAAGACGACAACTCCCCCGGGACTCGGACAGCACGACAGGGCAAGCGGCC
TTCTCCCCTGAGTGAGAATGTTAGGGAACTAAAGGAAGGGGCCATTCTGGGAACTGAACG
ACTTCTGAAAACTGGAGGACGAGTGTGGGAGCACGGCCAGGGCCATGACAAGGAAAATCG
GCACTTTCCTCTGGTAGAGAACTAGGCCAGATGTGGCCCCAGCGGCGGCCTCACCAGGGG
CCCAGTGATATGCTGTGTCCGCTCACCCCTCCTTTCCCTGGGCGACTGGAAAGGCTCGTT
TTCTTCAACTCCCCCTAAACTACCAACTCGGACTGAGAGCTTTCATGACTTTCTTTTTGT
TTTATGTGTGTCTGTATGTACATTAAAGCAAGTGATTTTAAACGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGCAGGGACCTCTGGCCTGGCTACCAGACTGTTCCTCAGCGGGGAATGGGGAAGATCC
TTTGAAACTCAGCTTCGGGAGTTGAGGATCAAGCTGCTTTGCACCCAAAGGTGGATTTGG
GGCCTGGCATCCCCTCTTCGCCCGGGGCGGGCTCTGCCCCATCCTATTTCTCCTGCTTGA
GATGGGCTCAGCCAAGAGCGTCCCAGTCACTCCAGCGCGGCCTCCGCCGCACAACAAGCT
TCTGGCTCGAGTAGCGGACCCCCGTTCACCCAGCGCCGGCATCCAACGCACTCCCATCCA
GGTAGAGAGCTCTCCACAGCCAAACCTGCCTTCAGGGGAGCAGCTGGAGGGTCCTAAGCA
GGCCCAGGACACAGATCCCCGCTCTCCTACCCTTGGCATTGCACGGACACCCATGAAGAC
CAGCAGCGGAGAGCTCCAAAGCCCACTGGTGAAACAGCTGAGTGATGTATTTGAGACGGA
AGACCCCAAGTCAAATCTTCCCCCAGAACCTATTCTGCCCCTGGAGACACTGTCATCTTC
TGAACTGGACTTGCCTCTGGGCACCCGGTTTTCCCTTGAGGACCAGATGCCACCTTGGAG
CCACAGTGAGCTCCCCTCCAAGCAGATGCTTTCCAAGGAGGAAACAGGACAGCCCTCAGA
AACCCCTGTGGCCAGCCAGGGCTCCGACAAGCCCTTGAGAGACCCCGAGACGCCTAGATC
TTCAGGTTCTAAGTGCAGCAGACGGAAACCAAACGGCAAAGTGCTAGGAAGATCTCCTCT
CACCATCCTGCAAGACGACAACTCCCCCGGGACTCGGACAGCACGACAGGGCAAGCGGCC
TTCTCCCCTGAGTGAGAATGTTAGGGAACTAAAGGAAGGGGCCATTCTGGGAACTGAACG
ACTTCTGAAAACTGGAGGACGAGTGTGGGAGCACGGCCAGGGCCATGACAAGGAAAATCG
GCACTTTCCTCTGGTAGAGAACTAGGCCAGATGTGGCCCCAGCGGCGGCCTCACCAGGGG
CCCAGTGATATGCTGTGTCCGCTCACCCCTCCTTTCCCTGGGCGACTGGAAAGGCTCGTT
TTCTTCAACTCCCCCTAAACTACCAACTCGGACTGAGAGCTTTCATGACTTTCTTTTTGT
TTTATGTGTGTCTGTATGTACATTAAAGCAAGTGATTTTAAACGAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12803453|gb|AAH02551.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12803453|gb|AAH02551.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               469-628, - strand, RNAz p=0.98831
               

               
               470-650, - strand, RNAz p=0.818173

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               469-628, - strand, RNAz p=0.98831
               

               
               470-650, - strand, RNAz p=0.818173

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-309, gnl|bosTau2|chr5 (61204296-61203987)
               

               
               1-309, gnl|Hg17|chr12 (6830559-6830250)
               

               
               1-309, gnl|Mm7|chr6 (124856748-124857049)
               


               
               430-727, gnl|bosTau2|chr5 (61203407-61203110)
               

               
               430-727, gnl|canFam2|chr27 (41202713-41202309)
               

               
               430-727, gnl|dasNov1|scaffold_5223 (38737-39141)
               

               
               430-727, gnl|echTel1|scaffold_319441 (61122-60726)
               

               
               430-727, gnl|hg17|chr12 (6828897-6829312)
               

               
               430-727, gnl|Hg17|chr12 (6829285-6828988)
               

               
               430-727, gnl|loxAfr1|scaffold_11498 (31144-30642)
               

               
               430-727, gnl|mm7|chr6 (124858912-124858510)
               

               
               430-727, gnl|Mm7|chr6 (124858535-124858832)
               

               
               430-727, gnl|monDom2|scaffold_31 (15326066-15326499)
               

               
               430-727, gnl|panTro1|chr10 (7365667-7366082)
               

               
               430-727, gnl|rheMac2|chr11 (7030856-7031272)
               

               
               430-727, gnl|rn3|chr4 (161200606-161200181)
               


               
               827-1181, gnl|bosTau2|chr5 (61202551-61202203)
               

               
               827-1181, gnl|Hg17|chr12 (6828626-6828272)
               

               
               827-1181, gnl|Mm7|chr6 (124859373-124859668)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-309, gnl|bosTau2|chr5 (61204296-61203987)
               

               
               1-309, gnl|Hg17|chr12 (6830559-6830250)
               

               
               1-309, gnl|Mm7|chr6 (124856748-124857049)
               


               
               430-727, gnl|bosTau2|chr5 (61203407-61203110)
               

               
               430-727, gnl|canFam2|chr27 (41202713-41202309)
               

               
               430-727, gnl|dasNov1|scaffold_5223 (38737-39141)
               

               
               430-727, gnl|echTel1|scaffold_319441 (61122-60726)
               

               
               430-727, gnl|hg17|chr12 (6828897-6829312)
               

               
               430-727, gnl|Hg17|chr12 (6829285-6828988)
               

               
               430-727, gnl|loxAfr1|scaffold_11498 (31144-30642)
               

               
               430-727, gnl|mm7|chr6 (124858912-124858510)
               

               
               430-727, gnl|Mm7|chr6 (124858535-124858832)
               

               
               430-727, gnl|monDom2|scaffold_31 (15326066-15326499)
               

               
               430-727, gnl|panTro1|chr10 (7365667-7366082)
               

               
               430-727, gnl|rheMac2|chr11 (7030856-7031272)
               

               
               430-727, gnl|rn3|chr4 (161200606-161200181)
               


               
               827-1181, gnl|bosTau2|chr5 (61202551-61202203)
               

               
               827-1181, gnl|Hg17|chr12 (6828626-6828272)
               

               
               827-1181, gnl|Mm7|chr6 (124859373-124859668)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               med (0.232504)
               

               
               nbm (0.198649)
               

               
               fty (0.17584)
               

               
               ute (0.132784)
               

               
               cly (0.120642)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               nbm (0.198649)
               

               
               fty (0.17584)
               

               
               ute (0.132784)
               

               
               cly (0.120642)

	469-628, - strand, RNAz p=0.98831
	470-650, - strand, RNAz p=0.818173

	1-309, gnl\|bosTau2\|chr5 (61204296-61203987)
	1-309, gnl\|Hg17\|chr12 (6830559-6830250)
	1-309, gnl\|Mm7\|chr6 (124856748-124857049)

	430-727, gnl\|bosTau2\|chr5 (61203407-61203110)
	430-727, gnl\|canFam2\|chr27 (41202713-41202309)
	430-727, gnl\|dasNov1\|scaffold_5223 (38737-39141)
	430-727, gnl\|echTel1\|scaffold_319441 (61122-60726)
	430-727, gnl\|hg17\|chr12 (6828897-6829312)
	430-727, gnl\|Hg17\|chr12 (6829285-6828988)
	430-727, gnl\|loxAfr1\|scaffold_11498 (31144-30642)
	430-727, gnl\|mm7\|chr6 (124858912-124858510)
	430-727, gnl\|Mm7\|chr6 (124858535-124858832)
	430-727, gnl\|monDom2\|scaffold_31 (15326066-15326499)
	430-727, gnl\|panTro1\|chr10 (7365667-7366082)
	430-727, gnl\|rheMac2\|chr11 (7030856-7031272)
	430-727, gnl\|rn3\|chr4 (161200606-161200181)

	827-1181, gnl\|bosTau2\|chr5 (61202551-61202203)
	827-1181, gnl\|Hg17\|chr12 (6828626-6828272)
	827-1181, gnl\|Mm7\|chr6 (124859373-124859668)

	med (0.232504)
	nbm (0.198649)
	fty (0.17584)
	ute (0.132784)
	cly (0.120642)