Non-Coding RNA Search

Ss1.1-Tes1-TES01F090091.5

Sequence:


               
               GGGCTCGGAAGCCCCACGGTGCCCTGTGTCTGGAGGAAGCCCTGGCCAGGGGCAGCTGTG
CTGGCTCTGGCTCTGTGCCTCTCACTGCTTCAGCATGATGCTGGGGACTCTGGGACTTTG
GGCACTGCTTCCAGCAACAGTGCAAGCACCCCCAAGCAGGCGGACCTGTGTGTTCTTTGA
GGCCCCTGGAGTGCGGGGAAGCACAAAGACTCTGGGGAAGCTGCTAGATGCAGGACCAGG
GCCCCCCAGGGGTATCCGCTGCCTCTACAGCCACTGCTGCTTTGGGATCTGGAACCTGAC
CCAAGACCGGGCACAGGTGGAGATGCAAGGATGCCGAGACAGTGATGAGCCAGGCTGTGA
GTCCCCCCACTGTGACCCGAGCCCCCGAGCCCATCCCAGCCCCGTCTCCACTCTCTTCAC
TTGCTCCTGTGGCACTGACTTCTGCAATGCCAATTACAGCCATCTGCCTCCTCCAGGGAG
CCCTGGGACTCCGGCTTCCCAGGGTCCCCAGGCTGTCCCAGGCGAGTCCATCTGGATGGC
ACAGGTGCTGCTGGGGCTGTTCCTCTTCCTCCTGCTGCTGCTGAGCAGCATCATCGTGGC
CCTGCTACAACGTAAGGCCTGCCGAGTGCAAGGTGGGCCAGAGCCAGAACCAGAGCCAGA
GCCAGAGCCAGACTCAGGCAGGAACTGGAGTGCCGAGCTGCCCGAGCTGCCCGAGCTCTG
CTTCTCCCAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTCGGAAGCCCCACGGTGCCCTGTGTCTGGAGGAAGCCCTGGCCAGGGGCAGCTGTG
CTGGCTCTGGCTCTGTGCCTCTCACTGCTTCAGCATGATGCTGGGGACTCTGGGACTTTG
GGCACTGCTTCCAGCAACAGTGCAAGCACCCCCAAGCAGGCGGACCTGTGTGTTCTTTGA
GGCCCCTGGAGTGCGGGGAAGCACAAAGACTCTGGGGAAGCTGCTAGATGCAGGACCAGG
GCCCCCCAGGGGTATCCGCTGCCTCTACAGCCACTGCTGCTTTGGGATCTGGAACCTGAC
CCAAGACCGGGCACAGGTGGAGATGCAAGGATGCCGAGACAGTGATGAGCCAGGCTGTGA
GTCCCCCCACTGTGACCCGAGCCCCCGAGCCCATCCCAGCCCCGTCTCCACTCTCTTCAC
TTGCTCCTGTGGCACTGACTTCTGCAATGCCAATTACAGCCATCTGCCTCCTCCAGGGAG
CCCTGGGACTCCGGCTTCCCAGGGTCCCCAGGCTGTCCCAGGCGAGTCCATCTGGATGGC
ACAGGTGCTGCTGGGGCTGTTCCTCTTCCTCCTGCTGCTGCTGAGCAGCATCATCGTGGC
CCTGCTACAACGTAAGGCCTGCCGAGTGCAAGGTGGGCCAGAGCCAGAACCAGAGCCAGA
GCCAGAGCCAGACTCAGGCAGGAACTGGAGTGCCGAGCTGCCCGAGCTGCCCGAGCTCTG
CTTCTCCCAGGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               145-242, + strand, RNAz p=0.617711

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-242, + strand, RNAz p=0.617711

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               145-355, gnl|bosTau2|chr5 (19027623-19027414)
               

               
               145-355, gnl|canFam2|chr27 (4796478-4796196)
               

               
               145-355, gnl|dasNov1|scaffold_143808 (3507-3226)
               

               
               145-355, gnl|hg17|chr12 (52104213-52104496)
               

               
               145-355, gnl|Hg17|chr12 (52104337-52104546)
               

               
               145-355, gnl|mm7|chr15 (102431853-102432119)
               

               
               145-355, gnl|Mm7|chr15 (102431960-102432169)
               

               
               145-355, gnl|oryCun1|scaffold_214650 (51234-51533)
               

               
               145-355, gnl|panTro1|chr10 (53346385-53346668)
               

               
               145-355, gnl|rheMac2|chr11 (50493651-50493935)
               

               
               145-355, gnl|rn3|chr7 (141280542-141280815)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-355, gnl|bosTau2|chr5 (19027623-19027414)
               

               
               145-355, gnl|canFam2|chr27 (4796478-4796196)
               

               
               145-355, gnl|dasNov1|scaffold_143808 (3507-3226)
               

               
               145-355, gnl|hg17|chr12 (52104213-52104496)
               

               
               145-355, gnl|Hg17|chr12 (52104337-52104546)
               

               
               145-355, gnl|mm7|chr15 (102431853-102432119)
               

               
               145-355, gnl|Mm7|chr15 (102431960-102432169)
               

               
               145-355, gnl|oryCun1|scaffold_214650 (51234-51533)
               

               
               145-355, gnl|panTro1|chr10 (53346385-53346668)
               

               
               145-355, gnl|rheMac2|chr11 (50493651-50493935)
               

               
               145-355, gnl|rn3|chr7 (141280542-141280815)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.41632)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.41632)

	145-355, gnl\|bosTau2\|chr5 (19027623-19027414)
	145-355, gnl\|canFam2\|chr27 (4796478-4796196)
	145-355, gnl\|dasNov1\|scaffold_143808 (3507-3226)
	145-355, gnl\|hg17\|chr12 (52104213-52104496)
	145-355, gnl\|Hg17\|chr12 (52104337-52104546)
	145-355, gnl\|mm7\|chr15 (102431853-102432119)
	145-355, gnl\|Mm7\|chr15 (102431960-102432169)
	145-355, gnl\|oryCun1\|scaffold_214650 (51234-51533)
	145-355, gnl\|panTro1\|chr10 (53346385-53346668)
	145-355, gnl\|rheMac2\|chr11 (50493651-50493935)
	145-355, gnl\|rn3\|chr7 (141280542-141280815)