Ss1.1-Tes1-TES01F090101.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTTTCCCTTTCCTGAACTGCTTTGTGGAGGAGCACTGTAAAGCCTTCCCCCACCATGAA GTGCGCTCCTTGCCATCTGCTGCATGATTTTCCTGGGCTTCGCGGATGATGTTCTGAATC TGCGCTGGCGCCATAAGCTGCTGCTGCCCACAGCTGCCTCACTACCTCTCCTCATGGTCT ATTTCACCAACTTTGGCAACACGACCATCGTGGTACCCAAGCCCTTCCGCCCAATTCTTG GCCTGCATCTGGACTTGGGAATCCTGTACTATGTCTACATGGGGCTGCTGGCAGTGTTCT GTACCAATGCCATCAATATTCTAGCAGGAATTAATGGCCTAGAGGCTGGCCAGTCGCTAG TCATTTCTGCTTCCATCATTGTCTTCAACCTGGTAGAGCTGGAAGGTGATTATCGGGATG ATCACGTCTTTTCCCTCTACTTCATGATACCTTTTTTCTTCACCACTTTGGGATTGCTCT ACCATAACTGGTACCCATCCCGGGTGTTTGTGGGAGATACCTTCTGCTACTTTGCTGGCA TGACCTTTGCCGTGGTGGGCATCTTGGGACACTTCAGCAAGACTATGCTACTCTTCTTCA TGCCTCAGGTGTTCAACTTCCTCTACTCACTGCCTCAGCTCCTGCATATCATCCCCTGCC CGCGCCACCGTATGCCCAGACTCAATACCAAGACAGGCAAACTGGAGATGAGCTATTCCA AGTTCAAGACCAAGAGCCTCTCTTTCTTGGGCACCTTTATTCTAAAGGTAGCAGAGAGCC TCCGGCTAGTGACCGTGCGCCAGAGTGAGAATGAGGATGGTGCCTTCACAGAGTGTAACA ACATGACCCTCATCAACTTGCTACTCAAAGTCTTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTTTCCCTTTCCTGAACTGCTTTGTGGAGGAGCACTGTAAAGCCTTCCCCCACCATGAA GTGCGCTCCTTGCCATCTGCTGCATGATTTTCCTGGGCTTCGCGGATGATGTTCTGAATC TGCGCTGGCGCCATAAGCTGCTGCTGCCCACAGCTGCCTCACTACCTCTCCTCATGGTCT ATTTCACCAACTTTGGCAACACGACCATCGTGGTACCCAAGCCCTTCCGCCCAATTCTTG GCCTGCATCTGGACTTGGGAATCCTGTACTATGTCTACATGGGGCTGCTGGCAGTGTTCT GTACCAATGCCATCAATATTCTAGCAGGAATTAATGGCCTAGAGGCTGGCCAGTCGCTAG TCATTTCTGCTTCCATCATTGTCTTCAACCTGGTAGAGCTGGAAGGTGATTATCGGGATG ATCACGTCTTTTCCCTCTACTTCATGATACCTTTTTTCTTCACCACTTTGGGATTGCTCT ACCATAACTGGTACCCATCCCGGGTGTTTGTGGGAGATACCTTCTGCTACTTTGCTGGCA TGACCTTTGCCGTGGTGGGCATCTTGGGACACTTCAGCAAGACTATGCTACTCTTCTTCA TGCCTCAGGTGTTCAACTTCCTCTACTCACTGCCTCAGCTCCTGCATATCATCCCCTGCC CGCGCCACCGTATGCCCAGACTCAATACCAAGACAGGCAAACTGGAGATGAGCTATTCCA AGTTCAAGACCAAGAGCCTCTCTTTCTTGGGCACCTTTATTCTAAAGGTAGCAGAGAGCC TCCGGCTAGTGACCGTGCGCCAGAGTGAGAATGAGGATGGTGCCTTCACAGAGTGTAACA ACATGACCCTCATCAACTTGCTACTCAAAGTCTTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 100-259, + strand, RNAz p=0.937603 | |
| 761-876, - strand, RNAz p=0.518416 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 100-259, + strand, RNAz p=0.937603 | |
| 761-876, - strand, RNAz p=0.518416 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_203316, + |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 61-259, gnl|bosTau2|chr15 (14290053-14289855) | |
| 61-259, gnl|canFam2|chr5 (17768394-17768220) | |
| 61-259, gnl|danRer3|chr5 (24969531-24969684) | |
| 61-259, gnl|dasNov1|scaffold_3723 (86417-86592) | |
| 61-259, gnl|echTel1|scaffold_303357 (35299-35125) | |
| 61-259, gnl|fr1|chrUn (187808324-187808497) | |
| 61-259, gnl|galGal2|chr24 (28716-28564) | |
| 61-259, gnl|hg17|chr11 (118476524-118476698) | |
| 61-259, gnl|Hg17|chr11 (118476747-118476549) | |
| 61-259, gnl|loxAfr1|scaffold_169677 (3879-4053) | |
| 61-259, gnl|mm7|chr9 (44262539-44262365) | |
| 61-259, gnl|Mm7|chr9 (44262314-44262512) | |
| 61-259, gnl|monDom2|scaffold_2 (119492844-119492673) | |
| 61-259, gnl|panTro1|chr9 (120491371-120491545) | |
| 61-259, gnl|rheMac2|chr14 (117506784-117506958) | |
| 61-259, gnl|rn3|chr8 (47315074-47314900) | |
| 61-259, gnl|tetNig1|chr7 (4783542-4783716) | |
| 61-259, gnl|xenTro1|scaffold_75 (366707-366554) | |
| 477-679, gnl|bosTau2|chr15 (14287720-14287517) | |
| 477-679, gnl|canFam2|chr5 (17770417-17770215) | |
| 477-679, gnl|danRer3|chr5 (24967708-24967909) | |
| 477-679, gnl|dasNov1|scaffold_3723 (84320-84522) | |
| 477-679, gnl|echTel1|scaffold_303357 (39762-39561) | |
| 477-679, gnl|fr1|chrUn (187807450-187807648) | |
| 477-679, gnl|galGal2|chr24 (30070-29868) | |
| 477-679, gnl|hg17|chr11 (118473765-118473967) | |
| 477-679, gnl|Hg17|chr11 (118473979-118473775) | |
| 477-679, gnl|loxAfr1|scaffold_66652 (146-348) | |
| 477-679, gnl|mm7|chr9 (44266449-44266247) | |
| 477-679, gnl|Mm7|chr9 (44266234-44266437) | |
| 477-679, gnl|monDom2|scaffold_2 (119495434-119495232) | |
| 477-679, gnl|oryCun1|scaffold_183788 (74-275) | |
| 477-679, gnl|panTro1|chr9 (120488448-120488650) | |
| 477-679, gnl|rheMac2|chr14 (117504043-117504245) | |
| 477-679, gnl|rn3|chr8 (47318750-47318548) | |
| 477-679, gnl|xenTro1|scaffold_75 (370303-370109) | |
| 761-876, gnl|bosTau2|chr15 (14286955-14286840) | |
| 761-876, gnl|canFam2|chr5 (17771125-17770956) | |
| 761-876, gnl|danRer3|chr5 (24964984-24965152) | |
| 761-876, gnl|dasNov1|scaffold_3723 (83511-83680) | |
| 761-876, gnl|echTel1|scaffold_303357 (40546-40379) | |
| 761-876, gnl|fr1|chrUn (187806835-187807004) | |
| 761-876, gnl|galGal2|chr24 (31271-31102) | |
| 761-876, gnl|hg17|chr11 (118473058-118473227) | |
| 761-876, gnl|Hg17|chr11 (118473224-118473109) | |
| 761-876, gnl|loxAfr1|scaffold_169677 (153-322) | |
| 761-876, gnl|mm7|chr9 (44267328-44267153) | |
| 761-876, gnl|Mm7|chr9 (44267154-44267269) | |
| 761-876, gnl|monDom2|scaffold_2 (119496194-119496019) | |
| 761-876, gnl|oryCun1|scaffold_136212 (202-27) | |
| 761-876, gnl|panTro1|chr9 (120487741-120487910) | |
| 761-876, gnl|rheMac2|chr14 (117503329-117503498) | |
| 761-876, gnl|rn3|chr8 (47319665-47319490) | |
| 761-876, gnl|tetNig1|chr7 (4782162-4782331) | |
| 761-876, gnl|xenTro1|scaffold_75 (371101-370932) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 61-259, gnl|bosTau2|chr15 (14290053-14289855) | |
| 61-259, gnl|canFam2|chr5 (17768394-17768220) | |
| 61-259, gnl|danRer3|chr5 (24969531-24969684) | |
| 61-259, gnl|dasNov1|scaffold_3723 (86417-86592) | |
| 61-259, gnl|echTel1|scaffold_303357 (35299-35125) | |
| 61-259, gnl|fr1|chrUn (187808324-187808497) | |
| 61-259, gnl|galGal2|chr24 (28716-28564) | |
| 61-259, gnl|hg17|chr11 (118476524-118476698) | |
| 61-259, gnl|Hg17|chr11 (118476747-118476549) | |
| 61-259, gnl|loxAfr1|scaffold_169677 (3879-4053) | |
| 61-259, gnl|mm7|chr9 (44262539-44262365) | |
| 61-259, gnl|Mm7|chr9 (44262314-44262512) | |
| 61-259, gnl|monDom2|scaffold_2 (119492844-119492673) | |
| 61-259, gnl|panTro1|chr9 (120491371-120491545) | |
| 61-259, gnl|rheMac2|chr14 (117506784-117506958) | |
| 61-259, gnl|rn3|chr8 (47315074-47314900) | |
| 61-259, gnl|tetNig1|chr7 (4783542-4783716) | |
| 61-259, gnl|xenTro1|scaffold_75 (366707-366554) | |
| 477-679, gnl|bosTau2|chr15 (14287720-14287517) | |
| 477-679, gnl|canFam2|chr5 (17770417-17770215) | |
| 477-679, gnl|danRer3|chr5 (24967708-24967909) | |
| 477-679, gnl|dasNov1|scaffold_3723 (84320-84522) | |
| 477-679, gnl|echTel1|scaffold_303357 (39762-39561) | |
| 477-679, gnl|fr1|chrUn (187807450-187807648) | |
| 477-679, gnl|galGal2|chr24 (30070-29868) | |
| 477-679, gnl|hg17|chr11 (118473765-118473967) | |
| 477-679, gnl|Hg17|chr11 (118473979-118473775) | |
| 477-679, gnl|loxAfr1|scaffold_66652 (146-348) | |
| 477-679, gnl|mm7|chr9 (44266449-44266247) | |
| 477-679, gnl|Mm7|chr9 (44266234-44266437) | |
| 477-679, gnl|monDom2|scaffold_2 (119495434-119495232) | |
| 477-679, gnl|oryCun1|scaffold_183788 (74-275) | |
| 477-679, gnl|panTro1|chr9 (120488448-120488650) | |
| 477-679, gnl|rheMac2|chr14 (117504043-117504245) | |
| 477-679, gnl|rn3|chr8 (47318750-47318548) | |
| 477-679, gnl|xenTro1|scaffold_75 (370303-370109) | |
| 761-876, gnl|bosTau2|chr15 (14286955-14286840) | |
| 761-876, gnl|canFam2|chr5 (17771125-17770956) | |
| 761-876, gnl|danRer3|chr5 (24964984-24965152) | |
| 761-876, gnl|dasNov1|scaffold_3723 (83511-83680) | |
| 761-876, gnl|echTel1|scaffold_303357 (40546-40379) | |
| 761-876, gnl|fr1|chrUn (187806835-187807004) | |
| 761-876, gnl|galGal2|chr24 (31271-31102) | |
| 761-876, gnl|hg17|chr11 (118473058-118473227) | |
| 761-876, gnl|Hg17|chr11 (118473224-118473109) | |
| 761-876, gnl|loxAfr1|scaffold_169677 (153-322) | |
| 761-876, gnl|mm7|chr9 (44267328-44267153) | |
| 761-876, gnl|Mm7|chr9 (44267154-44267269) | |
| 761-876, gnl|monDom2|scaffold_2 (119496194-119496019) | |
| 761-876, gnl|oryCun1|scaffold_136212 (202-27) | |
| 761-876, gnl|panTro1|chr9 (120487741-120487910) | |
| 761-876, gnl|rheMac2|chr14 (117503329-117503498) | |
| 761-876, gnl|rn3|chr8 (47319665-47319490) | |
| 761-876, gnl|tetNig1|chr7 (4782162-4782331) | |
| 761-876, gnl|xenTro1|scaffold_75 (371101-370932) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fcc (0.197785) | |
| fty (0.17584) | |
| pty (0.142714) | |
| eep (0.122564) | |
| eru (0.120048) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| fty (0.17584) | |
| pty (0.142714) | |
| eep (0.122564) | |
| eru (0.120048) |