Ss1.1-Tes1-TES01F120040.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCCTCGCCGAGCCGGAGGGGAAGGGACGCCGCTGCTGAGAAGATGGCGGCGACGGAGA CGATCCCTGCTTCAACTGCGGCCTCGGCCACGGCGACGGCCACTGCGGCTGCTCTCGGGG AGGTGGAGGATGAAGGGCTCCTGGCATCGCTGTTCCGGGACCGCTTCCCAGAGGCCCAGT GGCGGGAGCGGCCCGACGTGGGCCGCTACCTCAGGGAGTTGAGCGGCTCGGGGCTGGATC GGCTGCGGCGCGAGCCAGAGCGCCTGGCGGAGGAGCGAGCGCAGCTGCTGCAGCAGACGC GCGACTTGGCCTTCGCCAACTACAAGACCTTCATCCGCGGCGCCGAGTGCACCGAGCGCA TACATCGCCTCTTTGGCGACGTGGAGGAGTCGCTCGGCCGCCTGCTCGACCGCTTGCCCA GCTTCCAGCAGAGCTGCAGGAATTTTGTGAAAGAGGCTGAGGAGATCAGCTCCAATCGCC AGATGAACACCCTGACTCTAAACCGGCACACAGAAATCCTGGAAATCCTGGAGATACCTC AGCTCATGGACACCTGTGTCCGGAACAGCTATTATGAAGAGGCCCTGGAGCTTGCAGCCT ACGTACACCGACTGGAGAGAAAATACTCCTCCATCCCTGTCATCCAGAGCATTGTGAATG AAGTGCGCCAGTCCATGCAACTGATGCTGAGCCAGCTGATCCAACAACTGAGGACCAACA TCCAGCTCCCTGCCTGCCTCCGTGTCATTGGCTTCCTCCGGCAAATGGATATCTTCACTG AGGCTGAGTTGAGGGTCAAGTTTCTGCAGGCCCGAGATGCTTGGCTCCGTTCCATCCTGA CTGCCATCCCCAATGACGACCCCTATTTCCATATCACGAAAACCATTGAGGCCTGCCGTG TCCATCTATTTGATATCATCACCCAGTACCGTGCCATCTTCTCAGATGAGGACCCACTGC TGCCCCCTGCTGTGGGTGAGCACACTGTTAATGAGAGTGCCATCTTCCATGGCTGGGTGC TGCAGAAAATCTCGCAGTTCCTGCAGGTGCTGGAGGCTGACCTCAACCGGGGGATAGGCA GCCGTCTGGACTCTCTGCTGGGGCAGTGCATGTACTTTGGGCTGTCCTTCAGCCGGGTAG GGGCTGATTTCCGGGGTCAGTTGGCTCCTGTTTTTCAGCGAGTGGCTATCAGCACTTTCC AGAAAGCAATTCAGGAAGCAGTGGAGAAGTTCCAGGATGAAATGAACTCCTACACCTTCA TCTCGGCTCCAGCCATCCTGGGCAGCAGTAACCTGCCCGCTCCAATTCCCGTCACTCAGC CGGGGACCCTGCAGCCGCCCATGGTGCTCTTAGACTTCCCGCCCCTTGCCTGCTTCCTCA ACAATATTCTAGTTGCCTTCAATGATCTGCGCCTCTGCTGTCCTGTGGCCCTGGCACCGG ATGTGACTGGGGCCCTAGAGGATGCCCTTGCCAAGGTAACTCAAGTAATTCTGGCCTTCC ATCGCTCTGAAGAGGCTGCCTTCAGCAGTGGGGAGCAAGAGCTCTTCCTCCAGTTCTGCA CTGTCTTCCTGGAAGACCTTGTTCCTTATTTAAATCGCTGTCTCCAAGTCCTTTTTCCTC CAGCTCAGATAGCACAGATCTTAGGCATTCCACCCACTCAGCTCCCCAAGTACGGAAACC TTGGGCATGTGAACGTCAGCGTTGTCCACGAGCCTCTCGCCTTTATCCTGCCGAAGAAAG AGATGGTCTTCTGTCTGGACGAGAAGGAGCTAGTCCCGGAGCTCGCAGCTCCAGCACCAG AACCCTCTTCCGAAGGCGCACACCTCGAGCCTGTCTCCCCAGCTTTCCCTGACCCGCAGC AAGAGGTGGAATCCGCGGGGACGCTGCAGTCGGACGAACCCAGCGCGGGCACTTAACGGG CGCCTCCCGCTCCCAGAACCGGGTGCGGCGGGTCCCGGGGTGGGCGGCCTAGGGGCTGAC TGCCTGCAGGGCTCGGGGAACGCGAGCGGCCGCGTGGGTTTAGGCTGGAGGCGGCCTGCA GTGCCTCCTCTCCGACAGGCAAGGGCGAGGCTGCGACGGCATAATGAAGGGAAACCTGAT TCTTCCTGTAAATGGTTGATTAAACTATCAGAAATGGAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCCTCGCCGAGCCGGAGGGGAAGGGACGCCGCTGCTGAGAAGATGGCGGCGACGGAGA CGATCCCTGCTTCAACTGCGGCCTCGGCCACGGCGACGGCCACTGCGGCTGCTCTCGGGG AGGTGGAGGATGAAGGGCTCCTGGCATCGCTGTTCCGGGACCGCTTCCCAGAGGCCCAGT GGCGGGAGCGGCCCGACGTGGGCCGCTACCTCAGGGAGTTGAGCGGCTCGGGGCTGGATC GGCTGCGGCGCGAGCCAGAGCGCCTGGCGGAGGAGCGAGCGCAGCTGCTGCAGCAGACGC GCGACTTGGCCTTCGCCAACTACAAGACCTTCATCCGCGGCGCCGAGTGCACCGAGCGCA TACATCGCCTCTTTGGCGACGTGGAGGAGTCGCTCGGCCGCCTGCTCGACCGCTTGCCCA GCTTCCAGCAGAGCTGCAGGAATTTTGTGAAAGAGGCTGAGGAGATCAGCTCCAATCGCC AGATGAACACCCTGACTCTAAACCGGCACACAGAAATCCTGGAAATCCTGGAGATACCTC AGCTCATGGACACCTGTGTCCGGAACAGCTATTATGAAGAGGCCCTGGAGCTTGCAGCCT ACGTACACCGACTGGAGAGAAAATACTCCTCCATCCCTGTCATCCAGAGCATTGTGAATG AAGTGCGCCAGTCCATGCAACTGATGCTGAGCCAGCTGATCCAACAACTGAGGACCAACA TCCAGCTCCCTGCCTGCCTCCGTGTCATTGGCTTCCTCCGGCAAATGGATATCTTCACTG AGGCTGAGTTGAGGGTCAAGTTTCTGCAGGCCCGAGATGCTTGGCTCCGTTCCATCCTGA CTGCCATCCCCAATGACGACCCCTATTTCCATATCACGAAAACCATTGAGGCCTGCCGTG TCCATCTATTTGATATCATCACCCAGTACCGTGCCATCTTCTCAGATGAGGACCCACTGC TGCCCCCTGCTGTGGGTGAGCACACTGTTAATGAGAGTGCCATCTTCCATGGCTGGGTGC TGCAGAAAATCTCGCAGTTCCTGCAGGTGCTGGAGGCTGACCTCAACCGGGGGATAGGCA GCCGTCTGGACTCTCTGCTGGGGCAGTGCATGTACTTTGGGCTGTCCTTCAGCCGGGTAG GGGCTGATTTCCGGGGTCAGTTGGCTCCTGTTTTTCAGCGAGTGGCTATCAGCACTTTCC AGAAAGCAATTCAGGAAGCAGTGGAGAAGTTCCAGGATGAAATGAACTCCTACACCTTCA TCTCGGCTCCAGCCATCCTGGGCAGCAGTAACCTGCCCGCTCCAATTCCCGTCACTCAGC CGGGGACCCTGCAGCCGCCCATGGTGCTCTTAGACTTCCCGCCCCTTGCCTGCTTCCTCA ACAATATTCTAGTTGCCTTCAATGATCTGCGCCTCTGCTGTCCTGTGGCCCTGGCACCGG ATGTGACTGGGGCCCTAGAGGATGCCCTTGCCAAGGTAACTCAAGTAATTCTGGCCTTCC ATCGCTCTGAAGAGGCTGCCTTCAGCAGTGGGGAGCAAGAGCTCTTCCTCCAGTTCTGCA CTGTCTTCCTGGAAGACCTTGTTCCTTATTTAAATCGCTGTCTCCAAGTCCTTTTTCCTC CAGCTCAGATAGCACAGATCTTAGGCATTCCACCCACTCAGCTCCCCAAGTACGGAAACC TTGGGCATGTGAACGTCAGCGTTGTCCACGAGCCTCTCGCCTTTATCCTGCCGAAGAAAG AGATGGTCTTCTGTCTGGACGAGAAGGAGCTAGTCCCGGAGCTCGCAGCTCCAGCACCAG AACCCTCTTCCGAAGGCGCACACCTCGAGCCTGTCTCCCCAGCTTTCCCTGACCCGCAGC AAGAGGTGGAATCCGCGGGGACGCTGCAGTCGGACGAACCCAGCGCGGGCACTTAACGGG CGCCTCCCGCTCCCAGAACCGGGTGCGGCGGGTCCCGGGGTGGGCGGCCTAGGGGCTGAC TGCCTGCAGGGCTCGGGGAACGCGAGCGGCCGCGTGGGTTTAGGCTGGAGGCGGCCTGCA GTGCCTCCTCTCCGACAGGCAAGGGCGAGGCTGCGACGGCATAATGAAGGGAAACCTGAT TCTTCCTGTAAATGGTTGATTAAACTATCAGAAATGGAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-440, gnl|bosTau2|chr18 (13853158-13853597) | |
| 1-440, gnl|Hg17|chr16 (67931000-67930579) | |
| 1-440, gnl|Mm7|chr8 (105657000-105656397) | |
| 635-867, gnl|bosTau2|chr18 (13855748-13855981) | |
| 635-867, gnl|canFam2|chr5 (83327822-83327575) | |
| 635-867, gnl|danRer3|chr21 (31508204-31507967) | |
| 635-867, gnl|echTel1|scaffold_325190 (48698-48945) | |
| 635-867, gnl|fr1|chrUn (105521539-105521304) | |
| 635-867, gnl|galGal2|chr11_random (120655-120896) | |
| 635-867, gnl|hg17|chr16 (67926534-67926781) | |
| 635-867, gnl|Hg17|chr16 (67926768-67926533) | |
| 635-867, gnl|loxAfr1|scaffold_118538 (649-401) | |
| 635-867, gnl|mm7|chr8 (105652959-105653200) | |
| 635-867, gnl|Mm7|chr8 (105653191-105652958) | |
| 635-867, gnl|monDom2|scaffold_23 (4934713-4934491) | |
| 635-867, gnl|oryCun1|scaffold_185623 (24334-24104) | |
| 635-867, gnl|panTro1|chr18 (62267713-62267960) | |
| 635-867, gnl|rheMac2|chr20 (67711387-67711630) | |
| 635-867, gnl|rn3|chr19 (36914917-36915162) | |
| 635-867, gnl|tetNig1|chrUn_random (6378010-6378231) | |
| 635-867, gnl|xenTro1|scaffold_578 (275999-276256) | |
| 1345-1477, gnl|bosTau2|chr18 (13856196-13856328) | |
| 1345-1477, gnl|canFam2|chr5 (83328447-83328300) | |
| 1345-1477, gnl|danRer3|chr21 (31508821-31508673) | |
| 1345-1477, gnl|dasNov1|scaffold_171323 (4784-4931) | |
| 1345-1477, gnl|echTel1|scaffold_325190 (48073-48220) | |
| 1345-1477, gnl|fr1|chrUn (105522169-105522014) | |
| 1345-1477, gnl|galGal2|chr11_random (120051-120186) | |
| 1345-1477, gnl|hg17|chr16 (67925909-67926056) | |
| 1345-1477, gnl|Hg17|chr16 (67926055-67925923) | |
| 1345-1477, gnl|loxAfr1|scaffold_118538 (1274-1127) | |
| 1345-1477, gnl|mm7|chr8 (105652344-105652481) | |
| 1345-1477, gnl|Mm7|chr8 (105652480-105652348) | |
| 1345-1477, gnl|monDom2|scaffold_23 (4935333-4935188) | |
| 1345-1477, gnl|oryCun1|scaffold_185623 (24959-24812) | |
| 1345-1477, gnl|panTro1|chr18 (62267088-62267235) | |
| 1345-1477, gnl|rheMac2|chr20 (67710762-67710909) | |
| 1345-1477, gnl|rn3|chr19 (36914302-36914439) | |
| 1345-1477, gnl|tetNig1|chrUn_random (6377416-6377535) | |
| 1345-1477, gnl|xenTro1|scaffold_578 (275383-275515) | |
| 1643-2027, gnl|bosTau2|chr18 (13859355-13859745) | |
| 1643-2027, gnl|Hg17|chr16 (67922501-67922143) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-440, gnl|bosTau2|chr18 (13853158-13853597) | |
| 1-440, gnl|Hg17|chr16 (67931000-67930579) | |
| 1-440, gnl|Mm7|chr8 (105657000-105656397) | |
| 635-867, gnl|bosTau2|chr18 (13855748-13855981) | |
| 635-867, gnl|canFam2|chr5 (83327822-83327575) | |
| 635-867, gnl|danRer3|chr21 (31508204-31507967) | |
| 635-867, gnl|echTel1|scaffold_325190 (48698-48945) | |
| 635-867, gnl|fr1|chrUn (105521539-105521304) | |
| 635-867, gnl|galGal2|chr11_random (120655-120896) | |
| 635-867, gnl|hg17|chr16 (67926534-67926781) | |
| 635-867, gnl|Hg17|chr16 (67926768-67926533) | |
| 635-867, gnl|loxAfr1|scaffold_118538 (649-401) | |
| 635-867, gnl|mm7|chr8 (105652959-105653200) | |
| 635-867, gnl|Mm7|chr8 (105653191-105652958) | |
| 635-867, gnl|monDom2|scaffold_23 (4934713-4934491) | |
| 635-867, gnl|oryCun1|scaffold_185623 (24334-24104) | |
| 635-867, gnl|panTro1|chr18 (62267713-62267960) | |
| 635-867, gnl|rheMac2|chr20 (67711387-67711630) | |
| 635-867, gnl|rn3|chr19 (36914917-36915162) | |
| 635-867, gnl|tetNig1|chrUn_random (6378010-6378231) | |
| 635-867, gnl|xenTro1|scaffold_578 (275999-276256) | |
| 1345-1477, gnl|bosTau2|chr18 (13856196-13856328) | |
| 1345-1477, gnl|canFam2|chr5 (83328447-83328300) | |
| 1345-1477, gnl|danRer3|chr21 (31508821-31508673) | |
| 1345-1477, gnl|dasNov1|scaffold_171323 (4784-4931) | |
| 1345-1477, gnl|echTel1|scaffold_325190 (48073-48220) | |
| 1345-1477, gnl|fr1|chrUn (105522169-105522014) | |
| 1345-1477, gnl|galGal2|chr11_random (120051-120186) | |
| 1345-1477, gnl|hg17|chr16 (67925909-67926056) | |
| 1345-1477, gnl|Hg17|chr16 (67926055-67925923) | |
| 1345-1477, gnl|loxAfr1|scaffold_118538 (1274-1127) | |
| 1345-1477, gnl|mm7|chr8 (105652344-105652481) | |
| 1345-1477, gnl|Mm7|chr8 (105652480-105652348) | |
| 1345-1477, gnl|monDom2|scaffold_23 (4935333-4935188) | |
| 1345-1477, gnl|oryCun1|scaffold_185623 (24959-24812) | |
| 1345-1477, gnl|panTro1|chr18 (62267088-62267235) | |
| 1345-1477, gnl|rheMac2|chr20 (67710762-67710909) | |
| 1345-1477, gnl|rn3|chr19 (36914302-36914439) | |
| 1345-1477, gnl|tetNig1|chrUn_random (6377416-6377535) | |
| 1345-1477, gnl|xenTro1|scaffold_578 (275383-275515) | |
| 1643-2027, gnl|bosTau2|chr18 (13859355-13859745) | |
| 1643-2027, gnl|Hg17|chr16 (67922501-67922143) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fli (0.202881) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| cli (0.152812) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| cli (0.152812) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) |