Ss1.1-Tes1-TES01F120068.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCCTCCTTCCTGCCGCTCCCGCCCCTGCTCCGTCCCTCTTCCTCTCTGAGCCCCTCCCG AGATGCCGAGTCGCCCCCGGGGGTAGTCCAGGTCGAGGCGGAAGTGGAGCCGCCCGGAGC CACCCGCGTCCCAAGGAAAACTCGCCGCACCTCGGCCCATGGCCGCCTACTCGTACCGCC CGGGCCCCGGGGCCGGCCCTGCTGCGGGCGCCGCGCTGCCTGACCAGAGCTTCCTGTGGA ACGTCTTCCAGAGGGTTGACAAAGACAGGAGCGGCGTGATATCGGACAACGAGCTTCAAC AAGCACTATCCAACGGCACCTGGACTCCATTCAATCCAGTGACCGTCCGGTCGATCATAT CCATGTTTGACCGCGAGAACAAGGCCGGCGTGAATTTCAGCGAGTTCACTGGCGTCTGGA AGTACATCACCGACTGGCAGAACGTCTTCCGAACCTACGACAGGGACAACTCAGGCATGA TCGACAGGAACGAGCTCAAGCAGGCCCTCTCAGGTTTCGGGTACCGGCTCTCCGACCAGT TTCACGACATCCTCATTCGGAAGTTCGATAGACAAGGACGGGGACAGATCGCCTTCGACG ACTTCATCCAGGGCTGCATCGTCCTGCAGAGGTTGACAGATATATTCCGACGCTACGATA CGGATCAGGACGGCTGGATTCAGGTGTCATATGAACAGTACCTTTCCATGGTCTTCAGCA TCGTATAGTGCCGGTCTCCTGCAGACACCTTTGTGACTTGGGGAAGAAAAGACTGGAAAT GCCAAATCTCTTACCTTTAACCAAGGGAGCACGGATGCGGTTAGACAACTGTCCTTCCTT TAGATTTTGTATAATTAATACCTGGGGACCCAACTGTACATATGCGGAGAAGCTGGTTAA TGTTTCACAGTGCTCGCAGCAATTAGGTCATTGCTCGGATACACACATTAGACTTGAGAC TGTTTAACTGTGCCACGAGTGCGGCGAGATACAGTAACGTATCAGGTATTGTGCATGCAA AAACTCATCATGTGCATTTCTAGAAAGCTGCCGTTCTAGAGTGGAAATCAGCAGTAGGGA TTTTAAATAATGTGGAACTTGCACAGGAAGCTGCTCATGTGCCTTACTTTTTAAGAGGGT TTATTGTGTTCATTTGAATATGCAGCGTCAGCAATAAAGCACATGCCCTGAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCCTCCTTCCTGCCGCTCCCGCCCCTGCTCCGTCCCTCTTCCTCTCTGAGCCCCTCCCG AGATGCCGAGTCGCCCCCGGGGGTAGTCCAGGTCGAGGCGGAAGTGGAGCCGCCCGGAGC CACCCGCGTCCCAAGGAAAACTCGCCGCACCTCGGCCCATGGCCGCCTACTCGTACCGCC CGGGCCCCGGGGCCGGCCCTGCTGCGGGCGCCGCGCTGCCTGACCAGAGCTTCCTGTGGA ACGTCTTCCAGAGGGTTGACAAAGACAGGAGCGGCGTGATATCGGACAACGAGCTTCAAC AAGCACTATCCAACGGCACCTGGACTCCATTCAATCCAGTGACCGTCCGGTCGATCATAT CCATGTTTGACCGCGAGAACAAGGCCGGCGTGAATTTCAGCGAGTTCACTGGCGTCTGGA AGTACATCACCGACTGGCAGAACGTCTTCCGAACCTACGACAGGGACAACTCAGGCATGA TCGACAGGAACGAGCTCAAGCAGGCCCTCTCAGGTTTCGGGTACCGGCTCTCCGACCAGT TTCACGACATCCTCATTCGGAAGTTCGATAGACAAGGACGGGGACAGATCGCCTTCGACG ACTTCATCCAGGGCTGCATCGTCCTGCAGAGGTTGACAGATATATTCCGACGCTACGATA CGGATCAGGACGGCTGGATTCAGGTGTCATATGAACAGTACCTTTCCATGGTCTTCAGCA TCGTATAGTGCCGGTCTCCTGCAGACACCTTTGTGACTTGGGGAAGAAAAGACTGGAAAT GCCAAATCTCTTACCTTTAACCAAGGGAGCACGGATGCGGTTAGACAACTGTCCTTCCTT TAGATTTTGTATAATTAATACCTGGGGACCCAACTGTACATATGCGGAGAAGCTGGTTAA TGTTTCACAGTGCTCGCAGCAATTAGGTCATTGCTCGGATACACACATTAGACTTGAGAC TGTTTAACTGTGCCACGAGTGCGGCGAGATACAGTAACGTATCAGGTATTGTGCATGCAA AAACTCATCATGTGCATTTCTAGAAAGCTGCCGTTCTAGAGTGGAAATCAGCAGTAGGGA TTTTAAATAATGTGGAACTTGCACAGGAAGCTGCTCATGTGCCTTACTTTTTAAGAGGGT TTATTGTGTTCATTTGAATATGCAGCGTCAGCAATAAAGCACATGCCCTGAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 139-254, gnl|bosTau2|chr20 (42770877-42770993) | |
| 139-254, gnl|canFam2|chr34 (14936188-14936336) | |
| 139-254, gnl|canFam2|chr34 (14936329-14936192) | |
| 139-254, gnl|dasNov1|scaffold_42978 (4478-4629) | |
| 139-254, gnl|dasNov1|scaffold_42978 (4620-4482) | |
| 139-254, gnl|echTel1|scaffold_219957 (16636-16515) | |
| 139-254, gnl|echTel1|scaffold_219957 (16528-16634) | |
| 139-254, gnl|hg17|chr3 (197169567-197169721) | |
| 139-254, gnl|hg17|chr5 (324792-324935) | |
| 139-254, gnl|Hg17|chr5 (324813-324937) | |
| 139-254, gnl|mm7|chr13 (71250023-71250158) | |
| 139-254, gnl|mm7|chr13 (71250149-71250023) | |
| 139-254, gnl|Mm7|chr13 (71250141-71250019) | |
| 139-254, gnl|monDom2|scaffold_4 (12750106-12750256) | |
| 139-254, gnl|oryCun1|scaffold_203951 (25620-25478) | |
| 139-254, gnl|oryCun1|scaffold_203951 (25478-25620) | |
| 139-254, gnl|rheMac2|chr6 (28786-28628) | |
| 139-254, gnl|rheMac2|chr6 (28639-28782) | |
| 139-254, gnl|rn3|chr1 (29773081-29772942) | |
| 139-254, gnl|rn3|chr1 (29772951-29773077) | |
| 361-520, gnl|bosTau2|chr20 (42778467-42778626) | |
| 361-520, gnl|canFam2|chr34 (14925104-14924911) | |
| 361-520, gnl|danRer3|chr20 (52408073-52408267) | |
| 361-520, gnl|dasNov1|scaffold_218399 (1202-1008) | |
| 361-520, gnl|echTel1|scaffold_291312 (2543-2735) | |
| 361-520, gnl|fr1|chrUn (298975433-298975255) | |
| 361-520, gnl|galGal2|chr2 (88821603-88821796) | |
| 361-520, gnl|hg17|chr5 (359702-359896) | |
| 361-520, gnl|Hg17|chr5 (359717-359876) | |
| 361-520, gnl|loxAfr1|scaffold_33368 (4813-4619) | |
| 361-520, gnl|mm7|chr13 (71242772-71242579) | |
| 361-520, gnl|Mm7|chr13 (71242755-71242596) | |
| 361-520, gnl|monDom2|scaffold_4 (12771527-12771720) | |
| 361-520, gnl|oryCun1|scaffold_136915 (3394-3227) | |
| 361-520, gnl|panTro1|chr4_random (30235328-30235522) | |
| 361-520, gnl|rheMac2|chr6 (73819-74011) | |
| 361-520, gnl|rn3|chr1 (29779843-29780036) | |
| 361-520, gnl|tetNig1|chrUn_random (154491938-154492115) | |
| 361-520, gnl|xenTro1|scaffold_470 (231602-231795) | |
| 627-1183, gnl|bosTau2|chr20 (42785944-42786504) | |
| 627-1183, gnl|Hg17|chr5 (367529-368116) | |
| 627-1183, gnl|Mm7|chr13 (71236964-71236445) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 139-254, gnl|bosTau2|chr20 (42770877-42770993) | |
| 139-254, gnl|canFam2|chr34 (14936188-14936336) | |
| 139-254, gnl|canFam2|chr34 (14936329-14936192) | |
| 139-254, gnl|dasNov1|scaffold_42978 (4478-4629) | |
| 139-254, gnl|dasNov1|scaffold_42978 (4620-4482) | |
| 139-254, gnl|echTel1|scaffold_219957 (16636-16515) | |
| 139-254, gnl|echTel1|scaffold_219957 (16528-16634) | |
| 139-254, gnl|hg17|chr3 (197169567-197169721) | |
| 139-254, gnl|hg17|chr5 (324792-324935) | |
| 139-254, gnl|Hg17|chr5 (324813-324937) | |
| 139-254, gnl|mm7|chr13 (71250023-71250158) | |
| 139-254, gnl|mm7|chr13 (71250149-71250023) | |
| 139-254, gnl|Mm7|chr13 (71250141-71250019) | |
| 139-254, gnl|monDom2|scaffold_4 (12750106-12750256) | |
| 139-254, gnl|oryCun1|scaffold_203951 (25620-25478) | |
| 139-254, gnl|oryCun1|scaffold_203951 (25478-25620) | |
| 139-254, gnl|rheMac2|chr6 (28786-28628) | |
| 139-254, gnl|rheMac2|chr6 (28639-28782) | |
| 139-254, gnl|rn3|chr1 (29773081-29772942) | |
| 139-254, gnl|rn3|chr1 (29772951-29773077) | |
| 361-520, gnl|bosTau2|chr20 (42778467-42778626) | |
| 361-520, gnl|canFam2|chr34 (14925104-14924911) | |
| 361-520, gnl|danRer3|chr20 (52408073-52408267) | |
| 361-520, gnl|dasNov1|scaffold_218399 (1202-1008) | |
| 361-520, gnl|echTel1|scaffold_291312 (2543-2735) | |
| 361-520, gnl|fr1|chrUn (298975433-298975255) | |
| 361-520, gnl|galGal2|chr2 (88821603-88821796) | |
| 361-520, gnl|hg17|chr5 (359702-359896) | |
| 361-520, gnl|Hg17|chr5 (359717-359876) | |
| 361-520, gnl|loxAfr1|scaffold_33368 (4813-4619) | |
| 361-520, gnl|mm7|chr13 (71242772-71242579) | |
| 361-520, gnl|Mm7|chr13 (71242755-71242596) | |
| 361-520, gnl|monDom2|scaffold_4 (12771527-12771720) | |
| 361-520, gnl|oryCun1|scaffold_136915 (3394-3227) | |
| 361-520, gnl|panTro1|chr4_random (30235328-30235522) | |
| 361-520, gnl|rheMac2|chr6 (73819-74011) | |
| 361-520, gnl|rn3|chr1 (29779843-29780036) | |
| 361-520, gnl|tetNig1|chrUn_random (154491938-154492115) | |
| 361-520, gnl|xenTro1|scaffold_470 (231602-231795) | |
| 627-1183, gnl|bosTau2|chr20 (42785944-42786504) | |
| 627-1183, gnl|Hg17|chr5 (367529-368116) | |
| 627-1183, gnl|Mm7|chr13 (71236964-71236445) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| nmm (0.531209) | |
| cov (0.396458) | |
| aor (0.390549) | |
| col (0.390016) | |
| clu (0.358938) | |
| lin (0.291206) | |
| pty (0.285429) | |
| cga (0.279096) | |
| bla (0.248694) | |
| tra (0.246184) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| mas (0.210305) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| thg (0.126791) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cbl (0.114797) | |
| cty (0.10408) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.531209) | |
| cov (0.396458) | |
| aor (0.390549) | |
| col (0.390016) | |
| clu (0.358938) | |
| lin (0.291206) | |
| pty (0.285429) | |
| cga (0.279096) | |
| bla (0.248694) | |
| tra (0.246184) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| mas (0.210305) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| thg (0.126791) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cbl (0.114797) | |
| cty (0.10408) |