Ss1.1-Tes1-TES01F120093.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCACTTTATTAGCCAGCGGCTGGCCAGCAGGGCTCCCCAAGGCCCACCCTCACAGATGG ACAACAGAACGAACCTGCTACCCACTCCCCTGACCCTGGGGCCAGCGGGGAAAAGGAGAT ACCAGGGGCAGGGGGATGGCCTCACAGAGGCCTCGTAAGTACAAGGGGGTCACTGGCAGG GATGCAAGGGGCAGCAGGGTGTCGGGGAAGGCGGCCTATCCAGGGTGGCTCATGTCATGC GGCCTCCTGTGTTGGAGGGGGCCCCTGTTCAGTGTCCAGGCGGCACAGAGGACTATCGTA CACCATCTGCAGGTTCACCTTGTGGCCCACCAGCTCTCGGATGTTGTTGATGCCATATTT GATCATCGTCGGGCGCTCTAAGGAGAGGCCCCAGGCAATGACGGACACGTTCTCGGGGAG CCCCATGGGCAGCAGCATCTCGGGGCGGAAGACCCCGGAGTTTCCAACCTCTACCCACTT CTTCAGGCCTTGGTGGTAGCTGAACACCTCCATGCTGGGCTCGGTGTAGGGGTTGTAAGC CGGTTTGAAACGCAACTGAGTGATGCCCAGCTTGGTGAAGAACTCCCGCAGGACGCCCAT GAGGTGGCCCAAGGTGAGGCCGTGATCAGCCACAACGCCCTCGATCTGGTGGAACTCAGC CAGGTGCGTGGCATCCAAGGTCTCGTTCCGGAACACACGATCGATGGAGAAGTACTTGGC TGGTGTGAAGGGCTTCTTCTGCGCCAGGCGGTAGAGGGCGCGGGCACTGGCTGACGTGGT GTGCGTGCGGAGCAGGTTTTTCCGAGCTTCGTCCAGTTTCCAGTTGTACTTGTACCCCTG TGAGCCATAGCCACCCTGAGAGTGAGTCCGCTTGACTCGATGGACATAGTCCATTGGGAG CTGCAGGGCCTGGGGTGGATCTCGCAGAAAGAAAGTGTCATGCTGGTCACGTGCTGGGTG CTGCTGGGGCTGGAAGAGCGCATCAAAATTCCAGAAGGAGCTCTCAATGTAATTGTCGGT CGGCATCTCAGTGAACCCCATCTCCAGGAAGATCTGCCGGAACTGGGTGCGGACCTTGAG GAGGGGGTGCAGGTGGCCGCTCTCAGGGAGGATACCATGGGCCGAGAAATTGTAGGGCTT GAAGGGCCGGTCCCGCCAGGAGCCACTGGAAATCATCTCTGGGCTCAGTTCTGTCTCCTG CTTGGAGATGCTGGTGCTGAAGGCACTGCCTTTGCTCACCCAGTAGGTCTTCAGGGTCAC TTCAGTCAGCAGCTTCCTCTTCCTGAGCTCGCTCCTCTCCTTCTCTCCCAGCTTCTCGGC CTGCCCACCCTGGACCAGCTGGAGCCGCCGCTGTACCTCATCCTCCACGCTGTCCACCAC TCGGAACACCCGGGGCCCATCAGCAGCACTCTTGTCCACTCGGATCCACTTGTTGGACAT GGCCTTGCTGAAGCCCACCTTGCCACTCGGCAGTCGCATGAGCTCGCTCTGGGGCAGGCC CTCTGGGGGGACACTGCGAAACACCCGGGCCTCATGGCTGCCCTCCCGGGCAATCTCCTC GCCCTCAGCAGTAAGCTCCCAGCGCTTGGTGGAGCGCAGCTCAGCCTCGATAATCTCGCC CAGTGTCTGCAGGCTCTTCACGGCACCCACCACAGCCTGGTGTTCTAAACCCAGCTGGGC TGCCACCTCTGCGCTGTCCAGGCCGCCATCAGCCGCCTCCAGCCGCCGCAGCAACACCTC CGGCACCGGACCGTCGGCCATGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCACTTTATTAGCCAGCGGCTGGCCAGCAGGGCTCCCCAAGGCCCACCCTCACAGATGG ACAACAGAACGAACCTGCTACCCACTCCCCTGACCCTGGGGCCAGCGGGGAAAAGGAGAT ACCAGGGGCAGGGGGATGGCCTCACAGAGGCCTCGTAAGTACAAGGGGGTCACTGGCAGG GATGCAAGGGGCAGCAGGGTGTCGGGGAAGGCGGCCTATCCAGGGTGGCTCATGTCATGC GGCCTCCTGTGTTGGAGGGGGCCCCTGTTCAGTGTCCAGGCGGCACAGAGGACTATCGTA CACCATCTGCAGGTTCACCTTGTGGCCCACCAGCTCTCGGATGTTGTTGATGCCATATTT GATCATCGTCGGGCGCTCTAAGGAGAGGCCCCAGGCAATGACGGACACGTTCTCGGGGAG CCCCATGGGCAGCAGCATCTCGGGGCGGAAGACCCCGGAGTTTCCAACCTCTACCCACTT CTTCAGGCCTTGGTGGTAGCTGAACACCTCCATGCTGGGCTCGGTGTAGGGGTTGTAAGC CGGTTTGAAACGCAACTGAGTGATGCCCAGCTTGGTGAAGAACTCCCGCAGGACGCCCAT GAGGTGGCCCAAGGTGAGGCCGTGATCAGCCACAACGCCCTCGATCTGGTGGAACTCAGC CAGGTGCGTGGCATCCAAGGTCTCGTTCCGGAACACACGATCGATGGAGAAGTACTTGGC TGGTGTGAAGGGCTTCTTCTGCGCCAGGCGGTAGAGGGCGCGGGCACTGGCTGACGTGGT GTGCGTGCGGAGCAGGTTTTTCCGAGCTTCGTCCAGTTTCCAGTTGTACTTGTACCCCTG TGAGCCATAGCCACCCTGAGAGTGAGTCCGCTTGACTCGATGGACATAGTCCATTGGGAG CTGCAGGGCCTGGGGTGGATCTCGCAGAAAGAAAGTGTCATGCTGGTCACGTGCTGGGTG CTGCTGGGGCTGGAAGAGCGCATCAAAATTCCAGAAGGAGCTCTCAATGTAATTGTCGGT CGGCATCTCAGTGAACCCCATCTCCAGGAAGATCTGCCGGAACTGGGTGCGGACCTTGAG GAGGGGGTGCAGGTGGCCGCTCTCAGGGAGGATACCATGGGCCGAGAAATTGTAGGGCTT GAAGGGCCGGTCCCGCCAGGAGCCACTGGAAATCATCTCTGGGCTCAGTTCTGTCTCCTG CTTGGAGATGCTGGTGCTGAAGGCACTGCCTTTGCTCACCCAGTAGGTCTTCAGGGTCAC TTCAGTCAGCAGCTTCCTCTTCCTGAGCTCGCTCCTCTCCTTCTCTCCCAGCTTCTCGGC CTGCCCACCCTGGACCAGCTGGAGCCGCCGCTGTACCTCATCCTCCACGCTGTCCACCAC TCGGAACACCCGGGGCCCATCAGCAGCACTCTTGTCCACTCGGATCCACTTGTTGGACAT GGCCTTGCTGAAGCCCACCTTGCCACTCGGCAGTCGCATGAGCTCGCTCTGGGGCAGGCC CTCTGGGGGGACACTGCGAAACACCCGGGCCTCATGGCTGCCCTCCCGGGCAATCTCCTC GCCCTCAGCAGTAAGCTCCCAGCGCTTGGTGGAGCGCAGCTCAGCCTCGATAATCTCGCC CAGTGTCTGCAGGCTCTTCACGGCACCCACCACAGCCTGGTGTTCTAAACCCAGCTGGGC TGCCACCTCTGCGCTGTCCAGGCCGCCATCAGCCGCCTCCAGCCGCCGCAGCAACACCTC CGGCACCGGACCGTCGGCCATGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 605-724, + strand, RNAz p=0.516319 | |
| 1260-1352, - strand, RNAz p=0.834918 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 605-724, + strand, RNAz p=0.516319 | |
| 1260-1352, - strand, RNAz p=0.834918 |
| Aligned organism(s): 68 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
| 374-507, gnl|bosTau2|chr7 (8612841-8612973) | |
| 374-507, gnl|Hg17|chr19 (12895965-12896097) | |
| 374-507, gnl|Mm7|chr8 (83454448-83454324) | |
| 566-780, gnl|bosTau2|chr7 (8613293-8613506) | |
| 566-780, gnl|canFam2|chr20 (52265874-52265730) | |
| 566-780, gnl|danRer3|chr3 (3410859-3410718) | |
| 566-780, gnl|echTel1|scaffold_155253 (11755-11611) | |
| 566-780, gnl|fr1|chrUn (313376051-313375907) | |
| 566-780, gnl|hg17|chr19 (12896449-12896593) | |
| 566-780, gnl|Hg17|chr19 (12896452-12896665) | |
| 566-780, gnl|mm7|chr8 (83454034-83453890) | |
| 566-780, gnl|Mm7|chr8 (83454029-83453804) | |
| 566-780, gnl|monDom2|scaffold_159 (120252-120396) | |
| 566-780, gnl|panTro1|chr20 (13505683-13505827) | |
| 566-780, gnl|rheMac2|chr19 (12595929-12596073) | |
| 566-780, gnl|rn3|chr19 (24953754-24953898) | |
| 566-780, gnl|tetNig1|chr3 (1917707-1917851) | |
| 566-780, gnl|xenTro1|scaffold_468 (373424-373568) | |
| 833-949, gnl|bosTau2|chr7 (8613739-8613854) | |
| 833-949, gnl|canFam2|chr20 (52265447-52265311) | |
| 833-949, gnl|danRer3|chr3 (3409519-3409385) | |
| 833-949, gnl|echTel1|scaffold_155253 (11300-11165) | |
| 833-949, gnl|hg17|chr19 (12896883-12897013) | |
| 833-949, gnl|Hg17|chr19 (12896901-12897016) | |
| 833-949, gnl|loxAfr1|scaffold_7607 (21534-21399) | |
| 833-949, gnl|mm7|chr8 (83453595-83453466) | |
| 833-949, gnl|Mm7|chr8 (83453574-83453461) | |
| 833-949, gnl|monDom2|scaffold_159 (121516-121642) | |
| 833-949, gnl|panTro1|chr20 (13506117-13506247) | |
| 833-949, gnl|rheMac2|chr19 (12596363-12596493) | |
| 833-949, gnl|rn3|chr19 (24954193-24954325) | |
| 833-949, gnl|xenTro1|scaffold_468 (374952-375082) | |
| 1035-1167, gnl|bosTau2|chr7 (8616206-8616338) | |
| 1035-1167, gnl|Hg17|chr19 (12900347-12900479) | |
| 1035-1167, gnl|Mm7|chr8 (83450471-83450339) | |
| 1260-1378, gnl|bosTau2|chr7 (8618088-8618206) | |
| 1260-1378, gnl|canFam2|chr20 (52261524-52261374) | |
| 1260-1378, gnl|danRer3|chr3 (3401546-3401420) | |
| 1260-1378, gnl|echTel1|scaffold_155253 (8406-8266) | |
| 1260-1378, gnl|fr1|chrUn (250452992-250452850) | |
| 1260-1378, gnl|hg17|chr19 (12902018-12902168) | |
| 1260-1378, gnl|Hg17|chr19 (12902038-12902156) | |
| 1260-1378, gnl|loxAfr1|scaffold_72172 (31822-31678) | |
| 1260-1378, gnl|mm7|chr8 (83447561-83447411) | |
| 1260-1378, gnl|Mm7|chr8 (83447539-83447421) | |
| 1260-1378, gnl|monDom2|scaffold_159 (122973-123098) | |
| 1260-1378, gnl|panTro1|chr20 (13511231-13511381) | |
| 1260-1378, gnl|rheMac2|chr19 (12600925-12601074) | |
| 1260-1378, gnl|rn3|chr19 (24959765-24959915) | |
| 1260-1378, gnl|tetNig1|chr3 (1984695-1984846) | |
| 1260-1378, gnl|xenTro1|scaffold_468 (378825-378961) | |
| 1477-1616, gnl|bosTau2|chr7 (8618488-8618627) | |
| 1477-1616, gnl|canFam2|chr20 (52261132-52260982) | |
| 1477-1616, gnl|danRer3|chr3 (3395412-3395264) | |
| 1477-1616, gnl|echTel1|scaffold_155253 (8010-7860) | |
| 1477-1616, gnl|fr1|chrUn (250452575-250452428) | |
| 1477-1616, gnl|hg17|chr19 (12902419-12902569) | |
| 1477-1616, gnl|Hg17|chr19 (12902426-12902565) | |
| 1477-1616, gnl|loxAfr1|scaffold_72172 (31432-31282) | |
| 1477-1616, gnl|mm7|chr8 (83447162-83447012) | |
| 1477-1616, gnl|Mm7|chr8 (83447153-83447014) | |
| 1477-1616, gnl|monDom2|scaffold_159 (124979-125128) | |
| 1477-1616, gnl|oryCun1|scaffold_153343 (837-687) | |
| 1477-1616, gnl|panTro1|chr20 (13511632-13511782) | |
| 1477-1616, gnl|rheMac2|chr19 (12601317-12601467) | |
| 1477-1616, gnl|rn3|chr19 (24960167-24960317) | |
| 1477-1616, gnl|tetNig1|chr3 (1986418-1986562) | |
| 1477-1616, gnl|xenTro1|scaffold_468 (379400-379550) |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 374-507, gnl|bosTau2|chr7 (8612841-8612973) | |
| 374-507, gnl|Hg17|chr19 (12895965-12896097) | |
| 374-507, gnl|Mm7|chr8 (83454448-83454324) | |
| 566-780, gnl|bosTau2|chr7 (8613293-8613506) | |
| 566-780, gnl|canFam2|chr20 (52265874-52265730) | |
| 566-780, gnl|danRer3|chr3 (3410859-3410718) | |
| 566-780, gnl|echTel1|scaffold_155253 (11755-11611) | |
| 566-780, gnl|fr1|chrUn (313376051-313375907) | |
| 566-780, gnl|hg17|chr19 (12896449-12896593) | |
| 566-780, gnl|Hg17|chr19 (12896452-12896665) | |
| 566-780, gnl|mm7|chr8 (83454034-83453890) | |
| 566-780, gnl|Mm7|chr8 (83454029-83453804) | |
| 566-780, gnl|monDom2|scaffold_159 (120252-120396) | |
| 566-780, gnl|panTro1|chr20 (13505683-13505827) | |
| 566-780, gnl|rheMac2|chr19 (12595929-12596073) | |
| 566-780, gnl|rn3|chr19 (24953754-24953898) | |
| 566-780, gnl|tetNig1|chr3 (1917707-1917851) | |
| 566-780, gnl|xenTro1|scaffold_468 (373424-373568) | |
| 833-949, gnl|bosTau2|chr7 (8613739-8613854) | |
| 833-949, gnl|canFam2|chr20 (52265447-52265311) | |
| 833-949, gnl|danRer3|chr3 (3409519-3409385) | |
| 833-949, gnl|echTel1|scaffold_155253 (11300-11165) | |
| 833-949, gnl|hg17|chr19 (12896883-12897013) | |
| 833-949, gnl|Hg17|chr19 (12896901-12897016) | |
| 833-949, gnl|loxAfr1|scaffold_7607 (21534-21399) | |
| 833-949, gnl|mm7|chr8 (83453595-83453466) | |
| 833-949, gnl|Mm7|chr8 (83453574-83453461) | |
| 833-949, gnl|monDom2|scaffold_159 (121516-121642) | |
| 833-949, gnl|panTro1|chr20 (13506117-13506247) | |
| 833-949, gnl|rheMac2|chr19 (12596363-12596493) | |
| 833-949, gnl|rn3|chr19 (24954193-24954325) | |
| 833-949, gnl|xenTro1|scaffold_468 (374952-375082) | |
| 1035-1167, gnl|bosTau2|chr7 (8616206-8616338) | |
| 1035-1167, gnl|Hg17|chr19 (12900347-12900479) | |
| 1035-1167, gnl|Mm7|chr8 (83450471-83450339) | |
| 1260-1378, gnl|bosTau2|chr7 (8618088-8618206) | |
| 1260-1378, gnl|canFam2|chr20 (52261524-52261374) | |
| 1260-1378, gnl|danRer3|chr3 (3401546-3401420) | |
| 1260-1378, gnl|echTel1|scaffold_155253 (8406-8266) | |
| 1260-1378, gnl|fr1|chrUn (250452992-250452850) | |
| 1260-1378, gnl|hg17|chr19 (12902018-12902168) | |
| 1260-1378, gnl|Hg17|chr19 (12902038-12902156) | |
| 1260-1378, gnl|loxAfr1|scaffold_72172 (31822-31678) | |
| 1260-1378, gnl|mm7|chr8 (83447561-83447411) | |
| 1260-1378, gnl|Mm7|chr8 (83447539-83447421) | |
| 1260-1378, gnl|monDom2|scaffold_159 (122973-123098) | |
| 1260-1378, gnl|panTro1|chr20 (13511231-13511381) | |
| 1260-1378, gnl|rheMac2|chr19 (12600925-12601074) | |
| 1260-1378, gnl|rn3|chr19 (24959765-24959915) | |
| 1260-1378, gnl|tetNig1|chr3 (1984695-1984846) | |
| 1260-1378, gnl|xenTro1|scaffold_468 (378825-378961) | |
| 1477-1616, gnl|bosTau2|chr7 (8618488-8618627) | |
| 1477-1616, gnl|canFam2|chr20 (52261132-52260982) | |
| 1477-1616, gnl|danRer3|chr3 (3395412-3395264) | |
| 1477-1616, gnl|echTel1|scaffold_155253 (8010-7860) | |
| 1477-1616, gnl|fr1|chrUn (250452575-250452428) | |
| 1477-1616, gnl|hg17|chr19 (12902419-12902569) | |
| 1477-1616, gnl|Hg17|chr19 (12902426-12902565) | |
| 1477-1616, gnl|loxAfr1|scaffold_72172 (31432-31282) | |
| 1477-1616, gnl|mm7|chr8 (83447162-83447012) | |
| 1477-1616, gnl|Mm7|chr8 (83447153-83447014) | |
| 1477-1616, gnl|monDom2|scaffold_159 (124979-125128) | |
| 1477-1616, gnl|oryCun1|scaffold_153343 (837-687) | |
| 1477-1616, gnl|panTro1|chr20 (13511632-13511782) | |
| 1477-1616, gnl|rheMac2|chr19 (12601317-12601467) | |
| 1477-1616, gnl|rn3|chr19 (24960167-24960317) | |
| 1477-1616, gnl|tetNig1|chr3 (1986418-1986562) | |
| 1477-1616, gnl|xenTro1|scaffold_468 (379400-379550) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| eep (0.245128) | |
| fcc (0.197785) | |
| fhi (0.169578) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.245128) | |
| fcc (0.197785) | |
| fhi (0.169578) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) |