Ss1.1-Tes1-TES01G010021.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATGCTAATCTGAAGCTCAGACGCACAGAACTGGAGAGCAGTTGGGAGGGAACGAATCC GATCCCAGAGCTCTGTCCTCGTGGAGTTGGCTGGCTCTCCAAAAGCTCCGAGCAGAAAAG GGAGGCAGCACTTAAGCAAGTCTGGGGATTCTGGGTCTCTACTTCTCCACGTCCTGGGAA GGTGTGACTCAGGTCGATCTCCTGGCTGTAAAGTGGGACGATTAATCCTCACCTCCGTCG GTGGGGAAACTGTGAAGCGGCACGAGAAAGCCGCGTGCTCTCAACCAAGACCGCCAGACC CATCCTGGCCCGGAAGCATCTTCTCCCACTGCAGACAGTTTTCTGGGGCGGAATCTTCGT TCTTTTCTGTACTTGAGAATTTAGAACCGACCCTCGGCCGCTGGTTCCATACTCCCTCCC CGCCCCCGGTTGGGGGCGTACCCGGAAGTGCCCCTACGGAAACCGGTGGGGCTGCTCGCG GCTCTTCACCATGGGGACCGCGGCGGCTCCTGTGCGCTTCTGCCGCTGCGCTTGCTTCTG CTCTGAGAACCTGTACGTGGCGCGCTATGCGCTGCACGTGCGCTTTCGGAACGAGCAACA GCTGCGCCAGGACTACGGCCCGATCTTGCGCAGTCGAGGCTGTGTCAGCGCCAAGGACTT CCAGCAGCTGTTAGGAGAGCTTGAGCAGGAAGTGGAGCGGCGGCAGCGGCTGGGGCAGGA GTCAGCTGCCAGGAAAGCCCTCATTGCAAGTTCCTACCACCCCGTTCGGCCTGATATCTA CAGCTTGCTGCAGGATGAGGCTCTGGCCCCCGAGTTTCTGGCTGCAGCTGAGTACAGCAC GTCACCAGGCGCAGACCTCAAGGGCCTTCTCCAGCGGCTGGAGACAGTGTCAGAGGAGAA GCGTATCTACCGGCTGCCAGTGTTCACAGCGCCGTTCTGCCAGGCGCTGCTGCAGGAGCT GGAGCACTTCGAGCAGTCAGACTTGCCCAAAGGAAGACCCAACACCATGAACAACTATGG GGTATTGCTCTACGAGCTGGGCCTGGATGAACCACTGGTGACACCACTGCGGGAGCGCTT CCTGCAGCCACTGATGGCCCTGCTGTACCCAGACTGTGGTGGGGGCTGGCTGGACAGCCA CCGTGCCTTCGTGGTCAAATATGCACCAGGCCAGGACCGAGAGCTGGGTTGCCACTATGA TAATGCCGAGCTCACCCTCAACGTGTCCCTGGGCAAGGCCTTCACAGGGGGCGCCTTATA CTTTGGAGACCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATGCTAATCTGAAGCTCAGACGCACAGAACTGGAGAGCAGTTGGGAGGGAACGAATCC GATCCCAGAGCTCTGTCCTCGTGGAGTTGGCTGGCTCTCCAAAAGCTCCGAGCAGAAAAG GGAGGCAGCACTTAAGCAAGTCTGGGGATTCTGGGTCTCTACTTCTCCACGTCCTGGGAA GGTGTGACTCAGGTCGATCTCCTGGCTGTAAAGTGGGACGATTAATCCTCACCTCCGTCG GTGGGGAAACTGTGAAGCGGCACGAGAAAGCCGCGTGCTCTCAACCAAGACCGCCAGACC CATCCTGGCCCGGAAGCATCTTCTCCCACTGCAGACAGTTTTCTGGGGCGGAATCTTCGT TCTTTTCTGTACTTGAGAATTTAGAACCGACCCTCGGCCGCTGGTTCCATACTCCCTCCC CGCCCCCGGTTGGGGGCGTACCCGGAAGTGCCCCTACGGAAACCGGTGGGGCTGCTCGCG GCTCTTCACCATGGGGACCGCGGCGGCTCCTGTGCGCTTCTGCCGCTGCGCTTGCTTCTG CTCTGAGAACCTGTACGTGGCGCGCTATGCGCTGCACGTGCGCTTTCGGAACGAGCAACA GCTGCGCCAGGACTACGGCCCGATCTTGCGCAGTCGAGGCTGTGTCAGCGCCAAGGACTT CCAGCAGCTGTTAGGAGAGCTTGAGCAGGAAGTGGAGCGGCGGCAGCGGCTGGGGCAGGA GTCAGCTGCCAGGAAAGCCCTCATTGCAAGTTCCTACCACCCCGTTCGGCCTGATATCTA CAGCTTGCTGCAGGATGAGGCTCTGGCCCCCGAGTTTCTGGCTGCAGCTGAGTACAGCAC GTCACCAGGCGCAGACCTCAAGGGCCTTCTCCAGCGGCTGGAGACAGTGTCAGAGGAGAA GCGTATCTACCGGCTGCCAGTGTTCACAGCGCCGTTCTGCCAGGCGCTGCTGCAGGAGCT GGAGCACTTCGAGCAGTCAGACTTGCCCAAAGGAAGACCCAACACCATGAACAACTATGG GGTATTGCTCTACGAGCTGGGCCTGGATGAACCACTGGTGACACCACTGCGGGAGCGCTT CCTGCAGCCACTGATGGCCCTGCTGTACCCAGACTGTGGTGGGGGCTGGCTGGACAGCCA CCGTGCCTTCGTGGTCAAATATGCACCAGGCCAGGACCGAGAGCTGGGTTGCCACTATGA TAATGCCGAGCTCACCCTCAACGTGTCCCTGGGCAAGGCCTTCACAGGGGGCGCCTTATA CTTTGGAGACCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 341-458, + strand, RNAz p=0.94024 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 341-458, + strand, RNAz p=0.94024 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 2-622, gnl|bosTau2|chr17 (27444652-27445275) | |
| 2-622, gnl|Hg17|chr12 (121984212-121984811) | |
| 678-794, gnl|bosTau2|chr17 (27446430-27446546) | |
| 678-794, gnl|canFam2|chr26 (9545598-9545459) | |
| 678-794, gnl|dasNov1|scaffold_48751 (5812-5950) | |
| 678-794, gnl|echTel1|scaffold_157661 (2716-2573) | |
| 678-794, gnl|fr1|chrUn (207717377-207717255) | |
| 678-794, gnl|galGal2|chr15 (5168009-5167892) | |
| 678-794, gnl|hg17|chr12 (121986060-121986199) | |
| 678-794, gnl|Hg17|chr12 (121986079-121986195) | |
| 678-794, gnl|loxAfr1|scaffold_116109 (965-826) | |
| 678-794, gnl|mm7|chr5 (123359043-123359183) | |
| 678-794, gnl|Mm7|chr5 (123359061-123359177) | |
| 678-794, gnl|monDom2|scaffold_97 (3394733-3394871) | |
| 678-794, gnl|panTro1|chr10 (125066186-125066325) | |
| 678-794, gnl|rheMac2|chr11 (124244350-124244489) | |
| 678-794, gnl|rn3|chr12 (33472371-33472233) | |
| 678-794, gnl|tetNig1|chr12 (12174078-12174208) | |
| 678-794, gnl|xenTro1|scaffold_100 (1835668-1835792) | |
| 1021-1272, gnl|bosTau2|chr17 (27447799-27448050) | |
| 1021-1272, gnl|canFam2|chr26 (9543446-9543197) | |
| 1021-1272, gnl|dasNov1|scaffold_48751 (8444-8693) | |
| 1021-1272, gnl|echTel1|scaffold_157661 (1440-1191) | |
| 1021-1272, gnl|fr1|chrUn (207716672-207716423) | |
| 1021-1272, gnl|galGal2|chr15 (5165169-5164920) | |
| 1021-1272, gnl|hg17|chr12 (121988178-121988427) | |
| 1021-1272, gnl|Hg17|chr12 (121988179-121988430) | |
| 1021-1272, gnl|loxAfr1|scaffold_70458 (4380-4131) | |
| 1021-1272, gnl|mm7|chr5 (123360231-123360480) | |
| 1021-1272, gnl|Mm7|chr5 (123360232-123360483) | |
| 1021-1272, gnl|monDom2|scaffold_97 (3397686-3397935) | |
| 1021-1272, gnl|oryCun1|scaffold_195345 (13070-13318) | |
| 1021-1272, gnl|panTro1|chr10 (125068302-125068551) | |
| 1021-1272, gnl|rheMac2|chr11 (124246813-124247062) | |
| 1021-1272, gnl|rn3|chr12 (33471101-33470852) | |
| 1021-1272, gnl|tetNig1|chr12 (12175884-12176133) | |
| 1021-1272, gnl|xenTro1|scaffold_100 (1839304-1839549) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-622, gnl|bosTau2|chr17 (27444652-27445275) | |
| 2-622, gnl|Hg17|chr12 (121984212-121984811) | |
| 678-794, gnl|bosTau2|chr17 (27446430-27446546) | |
| 678-794, gnl|canFam2|chr26 (9545598-9545459) | |
| 678-794, gnl|dasNov1|scaffold_48751 (5812-5950) | |
| 678-794, gnl|echTel1|scaffold_157661 (2716-2573) | |
| 678-794, gnl|fr1|chrUn (207717377-207717255) | |
| 678-794, gnl|galGal2|chr15 (5168009-5167892) | |
| 678-794, gnl|hg17|chr12 (121986060-121986199) | |
| 678-794, gnl|Hg17|chr12 (121986079-121986195) | |
| 678-794, gnl|loxAfr1|scaffold_116109 (965-826) | |
| 678-794, gnl|mm7|chr5 (123359043-123359183) | |
| 678-794, gnl|Mm7|chr5 (123359061-123359177) | |
| 678-794, gnl|monDom2|scaffold_97 (3394733-3394871) | |
| 678-794, gnl|panTro1|chr10 (125066186-125066325) | |
| 678-794, gnl|rheMac2|chr11 (124244350-124244489) | |
| 678-794, gnl|rn3|chr12 (33472371-33472233) | |
| 678-794, gnl|tetNig1|chr12 (12174078-12174208) | |
| 678-794, gnl|xenTro1|scaffold_100 (1835668-1835792) | |
| 1021-1272, gnl|bosTau2|chr17 (27447799-27448050) | |
| 1021-1272, gnl|canFam2|chr26 (9543446-9543197) | |
| 1021-1272, gnl|dasNov1|scaffold_48751 (8444-8693) | |
| 1021-1272, gnl|echTel1|scaffold_157661 (1440-1191) | |
| 1021-1272, gnl|fr1|chrUn (207716672-207716423) | |
| 1021-1272, gnl|galGal2|chr15 (5165169-5164920) | |
| 1021-1272, gnl|hg17|chr12 (121988178-121988427) | |
| 1021-1272, gnl|Hg17|chr12 (121988179-121988430) | |
| 1021-1272, gnl|loxAfr1|scaffold_70458 (4380-4131) | |
| 1021-1272, gnl|mm7|chr5 (123360231-123360480) | |
| 1021-1272, gnl|Mm7|chr5 (123360232-123360483) | |
| 1021-1272, gnl|monDom2|scaffold_97 (3397686-3397935) | |
| 1021-1272, gnl|oryCun1|scaffold_195345 (13070-13318) | |
| 1021-1272, gnl|panTro1|chr10 (125068302-125068551) | |
| 1021-1272, gnl|rheMac2|chr11 (124246813-124247062) | |
| 1021-1272, gnl|rn3|chr12 (33471101-33470852) | |
| 1021-1272, gnl|tetNig1|chr12 (12175884-12176133) | |
| 1021-1272, gnl|xenTro1|scaffold_100 (1839304-1839549) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| duo (0.172801) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eru (0.120048) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.172801) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eru (0.120048) |