Non-Coding RNA Search

Ss1.1-Tes1-TES01G030033.5.5

Sequence:


               
               ACGGGGAGCGAGGCCGGCCGCCGGGCACTTCCTGTGGAGGCCGCAGCGGGCGCGGGCGCC
GACGGGCCGAGCGCCGAGGGAGCGAGCGAGCGAGCGAGCCGAGCCTCCCGCCGCCGCCAT
GGGCCAGAACGACCTGATGGGCACGGCCGAGGACTTCGCCGACCAGTTCCTGCGCGTCAC
CAAGCAGTACCTGCCGCACGTGGCTCGCCTGTGCCTGATCAGCACTTTCCTGGAGGACGG
CATCCGCATGTGGTTCCAGTGGAGCGAGCAGCGCGACTACATCGACACCACCTGGAACTG
CGGCTACCTGCTGGCCTCCTCCTTCGTGTTCCTCAACCTGCTGGGACAGCTGACTGGCTG
CATCCTGGTGCTGAGCAGGAACTTCGTGCAGTACGCCTGCTTTGGCCTCTTCGGGATCAT
AGCGCTGCAGACGATTGCCTACAGCATTTTGTGGGACTTGAAGTTTCTGATGAGGAACCT
GGCCCTGGGAGGCGGCTTGCTGCTGCTCCTGGCGGAGTCGCGTTCCGAAGGGAAGAGCAT
GTTCGCGGGCGTGCCCACCATGCGCGAGAGCTCCCCCAAGCAGTACATGCAGCTGGGGGG
CAGGGTCTTGCTGGTCCTGATGTTCATGACGCTGCTTCACTTTGACGCCAGCTTCTTCTC
GATTCTCCAGAACATCGTGGGCACAGCTCTGATGATTTTAGTGGCCATTGGTTTTAAAAC
CAAGCTGGCTGCTTTGACTCTTGTGGTCTGGCTGTTCGCGATCAACGTGTACTTCAACGC
CTTCTGGACCATTCCTGTCTACAAGCCCATGCACGACTTCCTGAAGTACGACTTCTTCCA
GACCATGTCGGTGATCGGCGGCTTGCTCCTGGTGGTGGCCCTGGGCCCCGGGGGCGTGTC
CATGGACGAGAAGAAGAAGGAGTGGTAACAGACCCCCTCCCTGCCTGGCTGGGACCCGTG
GCCGTCGGACTGGTCCAGGGTGGATTCGGCGTACCTGCCGGTGTTCGTCCCCTCCTCCCC
CTCCCCTGGGTAAAGGCACAGATGTTGTGAGAACTTTATTTGCAGACACCTGATAAGCGA
TGGCTAAATCTGCTCTGGACCCACGACCTGGCATCTGACCACTCGGAGCTGCTGGTCCTC
GGTCAGCGCCTCCCTCCCCAGGGCAGAGCCGCAGCCTCCAGGAGCGAGTGGCTGCTTGGC
TGGGGCCTCTCAGTCCTGTTTTTGTTTCTTTCTCGGGGTGGAGGACCTTCAAGCTGTACT
GTGAGCAGATACACTTGTGTATCATTCAAAGCAGTCTCCCTCTTATTATTTTTTAAAAGT
TTACGTTTTTAGCTAAAACTACTCAATGATTTGGGATGGCCCAGCCAAACAACACACTGG
TTCAGAATCACACCGGTGGCTTCCACGTTGTTTCTGCCCTGCATTCTGATACTTTATAGG
GACAGTGAGGACATTTAGGAAACCCCCAAACCCAAAGAATGAGGCAGTATTAGAGGGTGA
CCGAGGCTGCTCTTAACGGTAACCGGTATTGATCAGAAAATTGGCTCCGATTGGTGGTCT
TTATGGGTGATACTCTGGGAGCAGTAGTGGCTCAAGGGGGGACGGTGACCCTGGGGAAGC
CGCCTGGAGCCCACGGGGACCCGCCGCCCTGGCCCGGCAGCATGTCTGCACGTGGGCCTC
GACTCCCGTGGGACCAGCCTGGGAGCAGCTGTCACCGAGGGGCCGGGCGGGCCCTCAGAC
CAGTTACCTCACGCTGACCTTGTCCCAGAGCCACGGCTGCAGCTGGGCCGGTGCTGCCCG
GCCGTCTCCCCCGCGGGGCTCCCCGAGGCCGCGCAGCCACCTCTCCCCATTTTCGCCAGG
CTCCTGCTTGCTCAGATTGCATATTTGCTATGCTGAATGCAGCCCAAATTACTTTTTACG
ATTTGTGATGCCTTACCGATTGGATCTCGATCCTGTATTTAAAGTTTTCTAACATTGCCT
TACACTGTGTTTCTCTTCTTGGGGGGGGTGGGCGCTGCTGTCCGCTCCTCTGCCTCGTAG
CGGGTGCCACGAGCAGGGGGAACACGTGCCTCCCACTGTCCTCTCCCGGGTCCCTCTGGG
GGTCAGGCCGACCTGGCGAGGCCGGCCCCACTCGGAATGAGGCCCGCCTTGGAGCGCCCG
TACCCTCTCTGGTCTGTCAGCTGGGGCGCAAGCCCGAGGGCCCCCACCCTGGGGCTAATG
GGCTGGGCCTGAGCCAGGCCCCACGTCTGCCTTGCAGACCAGCGGTGCGGTGGGGAGCGC
CGCCACCCCTGCCCAGGGCGGCTCACGGGGCGGGGGAGGCCAGCTCTTGCCCCCTAGTGC
TCTTAGAGCCTCCCTGGCTCTGCAGCCGGGACCCAAATGAGGTCAGGGGAGTGATGGCCA
CCTGGCCAGCACCCACCGGTGCCCTAGCCCCTGTGGAGGCCTGCCCCAGGATGCTCCTAC
CCCCCCAGGCCTGCGTGTTGACTTCCCCCCAGTCACTGGGGTGCTCCCACACAAGGGGTG
GTCTCAACCTGGGTGGGTGGGGGTCTCTTCCTCCTTCCCACAGCACCACAGCCCCAGTGA
GCGCCCCCTCAGCCAGGTCGCAGCTACTGCGTGGCTCTGTTTTTGGTGTAGCTCCCTCCC
CCCAGGCCACCCTCACGTGGGGGGGTTGTTCCTGCCCCCCACCCCCACCGAGCTCAGGGG
GCTAGTGCATAGTGGGGGAGTACACGCCTCTGCTGGGAGGCGGGAGAGCCAGGATCCACC
AATTGGTTTTGGCAAACCAATTTCTGAAAAAGTTTTGGCTTTATGTGGGAAATAGATATG
AATCTCATTTTATGCTGTATTTTATATCTTAGTTGTGTTTGAAAACATTTTGATTTTTGG
AGACACGACAAAATAATAAATAATGGCATTTGTTGTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGGGAGCGAGGCCGGCCGCCGGGCACTTCCTGTGGAGGCCGCAGCGGGCGCGGGCGCC
GACGGGCCGAGCGCCGAGGGAGCGAGCGAGCGAGCGAGCCGAGCCTCCCGCCGCCGCCAT
GGGCCAGAACGACCTGATGGGCACGGCCGAGGACTTCGCCGACCAGTTCCTGCGCGTCAC
CAAGCAGTACCTGCCGCACGTGGCTCGCCTGTGCCTGATCAGCACTTTCCTGGAGGACGG
CATCCGCATGTGGTTCCAGTGGAGCGAGCAGCGCGACTACATCGACACCACCTGGAACTG
CGGCTACCTGCTGGCCTCCTCCTTCGTGTTCCTCAACCTGCTGGGACAGCTGACTGGCTG
CATCCTGGTGCTGAGCAGGAACTTCGTGCAGTACGCCTGCTTTGGCCTCTTCGGGATCAT
AGCGCTGCAGACGATTGCCTACAGCATTTTGTGGGACTTGAAGTTTCTGATGAGGAACCT
GGCCCTGGGAGGCGGCTTGCTGCTGCTCCTGGCGGAGTCGCGTTCCGAAGGGAAGAGCAT
GTTCGCGGGCGTGCCCACCATGCGCGAGAGCTCCCCCAAGCAGTACATGCAGCTGGGGGG
CAGGGTCTTGCTGGTCCTGATGTTCATGACGCTGCTTCACTTTGACGCCAGCTTCTTCTC
GATTCTCCAGAACATCGTGGGCACAGCTCTGATGATTTTAGTGGCCATTGGTTTTAAAAC
CAAGCTGGCTGCTTTGACTCTTGTGGTCTGGCTGTTCGCGATCAACGTGTACTTCAACGC
CTTCTGGACCATTCCTGTCTACAAGCCCATGCACGACTTCCTGAAGTACGACTTCTTCCA
GACCATGTCGGTGATCGGCGGCTTGCTCCTGGTGGTGGCCCTGGGCCCCGGGGGCGTGTC
CATGGACGAGAAGAAGAAGGAGTGGTAACAGACCCCCTCCCTGCCTGGCTGGGACCCGTG
GCCGTCGGACTGGTCCAGGGTGGATTCGGCGTACCTGCCGGTGTTCGTCCCCTCCTCCCC
CTCCCCTGGGTAAAGGCACAGATGTTGTGAGAACTTTATTTGCAGACACCTGATAAGCGA
TGGCTAAATCTGCTCTGGACCCACGACCTGGCATCTGACCACTCGGAGCTGCTGGTCCTC
GGTCAGCGCCTCCCTCCCCAGGGCAGAGCCGCAGCCTCCAGGAGCGAGTGGCTGCTTGGC
TGGGGCCTCTCAGTCCTGTTTTTGTTTCTTTCTCGGGGTGGAGGACCTTCAAGCTGTACT
GTGAGCAGATACACTTGTGTATCATTCAAAGCAGTCTCCCTCTTATTATTTTTTAAAAGT
TTACGTTTTTAGCTAAAACTACTCAATGATTTGGGATGGCCCAGCCAAACAACACACTGG
TTCAGAATCACACCGGTGGCTTCCACGTTGTTTCTGCCCTGCATTCTGATACTTTATAGG
GACAGTGAGGACATTTAGGAAACCCCCAAACCCAAAGAATGAGGCAGTATTAGAGGGTGA
CCGAGGCTGCTCTTAACGGTAACCGGTATTGATCAGAAAATTGGCTCCGATTGGTGGTCT
TTATGGGTGATACTCTGGGAGCAGTAGTGGCTCAAGGGGGGACGGTGACCCTGGGGAAGC
CGCCTGGAGCCCACGGGGACCCGCCGCCCTGGCCCGGCAGCATGTCTGCACGTGGGCCTC
GACTCCCGTGGGACCAGCCTGGGAGCAGCTGTCACCGAGGGGCCGGGCGGGCCCTCAGAC
CAGTTACCTCACGCTGACCTTGTCCCAGAGCCACGGCTGCAGCTGGGCCGGTGCTGCCCG
GCCGTCTCCCCCGCGGGGCTCCCCGAGGCCGCGCAGCCACCTCTCCCCATTTTCGCCAGG
CTCCTGCTTGCTCAGATTGCATATTTGCTATGCTGAATGCAGCCCAAATTACTTTTTACG
ATTTGTGATGCCTTACCGATTGGATCTCGATCCTGTATTTAAAGTTTTCTAACATTGCCT
TACACTGTGTTTCTCTTCTTGGGGGGGGTGGGCGCTGCTGTCCGCTCCTCTGCCTCGTAG
CGGGTGCCACGAGCAGGGGGAACACGTGCCTCCCACTGTCCTCTCCCGGGTCCCTCTGGG
GGTCAGGCCGACCTGGCGAGGCCGGCCCCACTCGGAATGAGGCCCGCCTTGGAGCGCCCG
TACCCTCTCTGGTCTGTCAGCTGGGGCGCAAGCCCGAGGGCCCCCACCCTGGGGCTAATG
GGCTGGGCCTGAGCCAGGCCCCACGTCTGCCTTGCAGACCAGCGGTGCGGTGGGGAGCGC
CGCCACCCCTGCCCAGGGCGGCTCACGGGGCGGGGGAGGCCAGCTCTTGCCCCCTAGTGC
TCTTAGAGCCTCCCTGGCTCTGCAGCCGGGACCCAAATGAGGTCAGGGGAGTGATGGCCA
CCTGGCCAGCACCCACCGGTGCCCTAGCCCCTGTGGAGGCCTGCCCCAGGATGCTCCTAC
CCCCCCAGGCCTGCGTGTTGACTTCCCCCCAGTCACTGGGGTGCTCCCACACAAGGGGTG
GTCTCAACCTGGGTGGGTGGGGGTCTCTTCCTCCTTCCCACAGCACCACAGCCCCAGTGA
GCGCCCCCTCAGCCAGGTCGCAGCTACTGCGTGGCTCTGTTTTTGGTGTAGCTCCCTCCC
CCCAGGCCACCCTCACGTGGGGGGGTTGTTCCTGCCCCCCACCCCCACCGAGCTCAGGGG
GCTAGTGCATAGTGGGGGAGTACACGCCTCTGCTGGGAGGCGGGAGAGCCAGGATCCACC
AATTGGTTTTGGCAAACCAATTTCTGAAAAAGTTTTGGCTTTATGTGGGAAATAGATATG
AATCTCATTTTATGCTGTATTTTATATCTTAGTTGTGTTTGAAAACATTTTGATTTTTGG
AGACACGACAAAATAATAAATAATGGCATTTGTTGTAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5R705_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R705_PONPY

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               841-1282, gnl|bosTau2|chr29 (2038104-2037656)
               

               
               841-1282, gnl|Hg17|chr9 (133260010-133259562)
               


               
               2654-2924, gnl|bosTau2|chr5 (2332501-2332240)
               

               
               2654-2924, gnl|Hg17|chr9 (133258122-133257894)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               841-1282, gnl|bosTau2|chr29 (2038104-2037656)
               

               
               841-1282, gnl|Hg17|chr9 (133260010-133259562)
               


               
               2654-2924, gnl|bosTau2|chr5 (2332501-2332240)
               

               
               2654-2924, gnl|Hg17|chr9 (133258122-133257894)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

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               eep (0.367692)
               

               
               eru (0.360144)
               

               
               clu (0.358938)
               

               
               cje (0.330469)
               

               
               cty (0.31224)
               

               
               cli (0.305623)
               

               
               jej (0.296765)
               

               
               nmm (0.265604)
               

               
               nms (0.213858)
               

               
               nbm (0.198649)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.367692)
               

               
               eru (0.360144)
               

               
               clu (0.358938)
               

               
               cje (0.330469)
               

               
               cty (0.31224)
               

               
               cli (0.305623)
               

               
               jej (0.296765)
               

               
               nmm (0.265604)
               

               
               nms (0.213858)
               

               
               nbm (0.198649)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	841-1282, gnl\|bosTau2\|chr29 (2038104-2037656)
	841-1282, gnl\|Hg17\|chr9 (133260010-133259562)

	2654-2924, gnl\|bosTau2\|chr5 (2332501-2332240)
	2654-2924, gnl\|Hg17\|chr9 (133258122-133257894)

	eep (0.367692)
	eru (0.360144)
	clu (0.358938)
	cje (0.330469)
	cty (0.31224)
	cli (0.305623)
	jej (0.296765)
	nmm (0.265604)
	nms (0.213858)
	nbm (0.198649)
	nep (0.183925)
	mcp (0.170648)
	fhi (0.169578)
	nje (0.16592)
	csp (0.161186)
	pty (0.142714)
	ute (0.132784)
	cov (0.132153)
	ese (0.126502)
	ebs (0.118301)
	eje (0.0988338)