Ss1.1-Tes1-TES01G040002.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCAACCTTGTCCCCCCCCCAAGCCAGCGCGGCTTCTGGGGCAGCGGCGCTGGGCGCCGC CGCCGGCTCGTCTACCCTTTCCCTCAGCAGCCTCCTTTCAACCTTGTCCCCCCCCCAAGC CAGCGCGGCTTCTGGGGCAGCGGCGGCGGCAGCTCCCGTTCCTGCCGCATTTCTCTTCCC TCCTTCCCTCCCCGCCAGATCTCCGAATTCGCCTGCCATGGCCTTACTCACTGCGGCCGC CCGGCTCTTCGGAGCCAAGAATGCATCCTGTCTTGTTCTTGCTGCCCGGCATGCCAGTGC TTCTTCCACGAACTTAAAAGACATTTTGGCTGACCTGATACCTAAGGAGCAAGCCAGAAT TAAGACCTTCAGGCAGCAACACGGCAACACCGTGGTGGGCCAAATCACTGTGGACATGAT GTATGGTGGCATGAGAGGCATGAAGGGATTGGTGTATGAAACATCGGTTCTTGATCCTGA TGAGGGCATCCGTTTCCGAGGCTACAGTATCCCTGAATGCCAGAAAATGCTGCCCAAGGC TAAGGGTGGGGAAGAACCGCTGCCAGAGGGCTTATTTTGGCTGCTGGTAACTGGACAGAT CCCAACAGAGGAGCAGGTGTCTTGGCTCTCAAAAGAGTGGGCAAAGAGGGCAGCTCTGCC TTCCCATGTGGTCACCATGCTGGACAACTTTCCCACGAATCTACACCCCATGTCTCAGCT CAGTGCAGCCATTACAGCCCTCAACAGTGAAAGTAACTTTGCCCGAGCATATGCAGAGGG TATCCACCGAACCAAGTACTGGGAGTTGATTTATGAAGACTGTATGGATCTGATCGCAAA GCTACCTTGTGTTGCAGCAAAGATCTACCGGAATCTCTACCGGGAGGGCAGCAGTATTGG GGCCATTGATTCTAAACTGGACTGGTCCCACAATTTCACCAACATGTTAGGCTATACTGA TGCTCAGTTCACGGAGCTCATGCGCTTGTACCTCACCATCCACAGTGACCATGAAGGTGG CAATGTAAGTGCTCATACCAGCCATTTGGTGGGCAGTGCCCTTTCAGACCCCTACTTGTC CTTTGCAGCAGCCATGAATGGGCTGGCAGGGCCCCTACATGGGCTGGCAAATCAGGAAGT GCTTGTTTGGCTGACACAGCTGCAGAAGGAAGTCGGCAAAGATGTGTCAGATGAGAAGTT ACGAGACTACATCTGGAATACACTCAACTCAGGACGGGTTGTCCCAGGCTATGGCCACGC AGTACTAAGGAAGACTGATCCACGATATACCTGTCAAAGAGAGTTTGCTCTGAAACACCT GCCTCATGACCCCATGTTTAAGCTGGTTGCTCAGCTGTACAAGATTGTGCCCAATGTCCT CCTGGAACAGGGCAAGGCTAAGAATCCTTGGCCCAATGTGGATGCTCACAGTGGGGTGCT GCTCCAGTACTATGGCATGACGGAGATGAACTACTACACAGTCCTGTTCGGGGTATCACG GGCACTGGGTGTATTAGCACAGCTCATCTGGAGCCGAGCCTTAGGCTTCCCTCTAGAGAG GCCCAAGTCCATGAGCACAGACGGTCTGATAAAACTTGTGGACTCTAAGTGAGGGTGAAA CTGAAGACTGGGAAGAAACTAACTACCAGAAAGTGAGGGATCTTTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCAACCTTGTCCCCCCCCCAAGCCAGCGCGGCTTCTGGGGCAGCGGCGCTGGGCGCCGC CGCCGGCTCGTCTACCCTTTCCCTCAGCAGCCTCCTTTCAACCTTGTCCCCCCCCCAAGC CAGCGCGGCTTCTGGGGCAGCGGCGGCGGCAGCTCCCGTTCCTGCCGCATTTCTCTTCCC TCCTTCCCTCCCCGCCAGATCTCCGAATTCGCCTGCCATGGCCTTACTCACTGCGGCCGC CCGGCTCTTCGGAGCCAAGAATGCATCCTGTCTTGTTCTTGCTGCCCGGCATGCCAGTGC TTCTTCCACGAACTTAAAAGACATTTTGGCTGACCTGATACCTAAGGAGCAAGCCAGAAT TAAGACCTTCAGGCAGCAACACGGCAACACCGTGGTGGGCCAAATCACTGTGGACATGAT GTATGGTGGCATGAGAGGCATGAAGGGATTGGTGTATGAAACATCGGTTCTTGATCCTGA TGAGGGCATCCGTTTCCGAGGCTACAGTATCCCTGAATGCCAGAAAATGCTGCCCAAGGC TAAGGGTGGGGAAGAACCGCTGCCAGAGGGCTTATTTTGGCTGCTGGTAACTGGACAGAT CCCAACAGAGGAGCAGGTGTCTTGGCTCTCAAAAGAGTGGGCAAAGAGGGCAGCTCTGCC TTCCCATGTGGTCACCATGCTGGACAACTTTCCCACGAATCTACACCCCATGTCTCAGCT CAGTGCAGCCATTACAGCCCTCAACAGTGAAAGTAACTTTGCCCGAGCATATGCAGAGGG TATCCACCGAACCAAGTACTGGGAGTTGATTTATGAAGACTGTATGGATCTGATCGCAAA GCTACCTTGTGTTGCAGCAAAGATCTACCGGAATCTCTACCGGGAGGGCAGCAGTATTGG GGCCATTGATTCTAAACTGGACTGGTCCCACAATTTCACCAACATGTTAGGCTATACTGA TGCTCAGTTCACGGAGCTCATGCGCTTGTACCTCACCATCCACAGTGACCATGAAGGTGG CAATGTAAGTGCTCATACCAGCCATTTGGTGGGCAGTGCCCTTTCAGACCCCTACTTGTC CTTTGCAGCAGCCATGAATGGGCTGGCAGGGCCCCTACATGGGCTGGCAAATCAGGAAGT GCTTGTTTGGCTGACACAGCTGCAGAAGGAAGTCGGCAAAGATGTGTCAGATGAGAAGTT ACGAGACTACATCTGGAATACACTCAACTCAGGACGGGTTGTCCCAGGCTATGGCCACGC AGTACTAAGGAAGACTGATCCACGATATACCTGTCAAAGAGAGTTTGCTCTGAAACACCT GCCTCATGACCCCATGTTTAAGCTGGTTGCTCAGCTGTACAAGATTGTGCCCAATGTCCT CCTGGAACAGGGCAAGGCTAAGAATCCTTGGCCCAATGTGGATGCTCACAGTGGGGTGCT GCTCCAGTACTATGGCATGACGGAGATGAACTACTACACAGTCCTGTTCGGGGTATCACG GGCACTGGGTGTATTAGCACAGCTCATCTGGAGCCGAGCCTTAGGCTTCCCTCTAGAGAG GCCCAAGTCCATGAGCACAGACGGTCTGATAAAACTTGTGGACTCTAAGTGAGGGTGAAA CTGAAGACTGGGAAGAAACTAACTACCAGAAAGTGAGGGATCTTTAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 422-541, - strand, RNAz p=0.865926 | |
| 622-741, - strand, RNAz p=0.655613 | |
| 1141-1260, - strand, RNAz p=0.741088 | |
| 1501-1620, + strand, RNAz p=0.704467 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 422-541, - strand, RNAz p=0.865926 | |
| 622-741, - strand, RNAz p=0.655613 | |
| 1141-1260, - strand, RNAz p=0.741088 | |
| 1501-1620, + strand, RNAz p=0.704467 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 49-259, gnl|bosTau2|chr5 (33336466-33336669) | |
| 49-259, gnl|canFam2|chr10 (3593418-3594547) | |
| 49-259, gnl|canFam2|chr17 (59057984-59057860) | |
| 49-259, gnl|canFam2|chr17 (59057820-59057983) | |
| 49-259, gnl|canFam2|chr17 (59057836-59057986) | |
| 49-259, gnl|dasNov1|scaffold_51367 (3382-3268) | |
| 49-259, gnl|dasNov1|scaffold_51367 (3239-3381) | |
| 49-259, gnl|dasNov1|scaffold_51367 (3243-3384) | |
| 49-259, gnl|dasNov1|scaffold_5330 (48780-47626) | |
| 49-259, gnl|echTel1|scaffold_309954 (139347-139214) | |
| 49-259, gnl|echTel1|scaffold_309954 (139180-139346) | |
| 49-259, gnl|echTel1|scaffold_309954 (139187-139349) | |
| 49-259, gnl|echTel1|scaffold_318969 (73376-72307) | |
| 49-259, gnl|fr1|chrUn (251127163-251127265) | |
| 49-259, gnl|hg17|chr12 (54979395-54980523) | |
| 49-259, gnl|Hg17|chr12 (54980413-54980211) | |
| 49-259, gnl|hg17|chr19 (18002322-18002478) | |
| 49-259, gnl|hg17|chr2 (63855786-63855946) | |
| 49-259, gnl|hg17|chr3 (108530699-108530825) | |
| 49-259, gnl|loxAfr1|scaffold_1805 (17658-17528) | |
| 49-259, gnl|loxAfr1|scaffold_1805 (18507-17350) | |
| 49-259, gnl|loxAfr1|scaffold_1805 (17498-17657) | |
| 49-259, gnl|loxAfr1|scaffold_1805 (17501-17660) | |
| 49-259, gnl|mm7|chr10 (99320573-99320704) | |
| 49-259, gnl|mm7|chr10 (127840202-127839145) | |
| 49-259, gnl|mm7|chr10 (99320691-99320574) | |
| 49-259, gnl|mm7|chr10 (99320729-99320571) | |
| 49-259, gnl|Mm7|chr10 (127839253-127839456) | |
| 49-259, gnl|oryCun1|scaffold_128565 (2661-2534) | |
| 49-259, gnl|oryCun1|scaffold_128565 (2505-2660) | |
| 49-259, gnl|oryCun1|scaffold_128565 (2508-2663) | |
| 49-259, gnl|oryCun1|scaffold_186802 (49830-48700) | |
| 49-259, gnl|panTro1|chr10 (56230317-56231445) | |
| 49-259, gnl|panTro1|chr12 (66082441-66082601) | |
| 49-259, gnl|panTro1|chr20 (18994012-18994165) | |
| 49-259, gnl|panTro1|chr2_random (2164372-2164246) | |
| 49-259, gnl|rheMac2|chr11 (53373554-53374681) | |
| 49-259, gnl|rheMac2|chr13 (63900744-63900900) | |
| 49-259, gnl|rheMac2|chr2 (27445915-27446042) | |
| 49-259, gnl|rheMac2|chr2 (27446066-27445913) | |
| 49-259, gnl|rn3|chr7 (37436489-37436618) | |
| 49-259, gnl|rn3|chr7 (1627042-1625983) | |
| 49-259, gnl|rn3|chr7 (37436628-37436490) | |
| 49-259, gnl|rn3|chr7 (37436625-37436487) | |
| 303-1668, gnl|bosTau2|chr10 (64491348-64492711) | |
| 303-1668, gnl|Hg17|chr19 (18002523-18003884) | |
| 303-1668, gnl|Mm7|chr10 (99320524-99319145) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 49-259, gnl|bosTau2|chr5 (33336466-33336669) | |
| 49-259, gnl|canFam2|chr10 (3593418-3594547) | |
| 49-259, gnl|canFam2|chr17 (59057984-59057860) | |
| 49-259, gnl|canFam2|chr17 (59057820-59057983) | |
| 49-259, gnl|canFam2|chr17 (59057836-59057986) | |
| 49-259, gnl|dasNov1|scaffold_51367 (3382-3268) | |
| 49-259, gnl|dasNov1|scaffold_51367 (3239-3381) | |
| 49-259, gnl|dasNov1|scaffold_51367 (3243-3384) | |
| 49-259, gnl|dasNov1|scaffold_5330 (48780-47626) | |
| 49-259, gnl|echTel1|scaffold_309954 (139347-139214) | |
| 49-259, gnl|echTel1|scaffold_309954 (139180-139346) | |
| 49-259, gnl|echTel1|scaffold_309954 (139187-139349) | |
| 49-259, gnl|echTel1|scaffold_318969 (73376-72307) | |
| 49-259, gnl|fr1|chrUn (251127163-251127265) | |
| 49-259, gnl|hg17|chr12 (54979395-54980523) | |
| 49-259, gnl|Hg17|chr12 (54980413-54980211) | |
| 49-259, gnl|hg17|chr19 (18002322-18002478) | |
| 49-259, gnl|hg17|chr2 (63855786-63855946) | |
| 49-259, gnl|hg17|chr3 (108530699-108530825) | |
| 49-259, gnl|loxAfr1|scaffold_1805 (17658-17528) | |
| 49-259, gnl|loxAfr1|scaffold_1805 (18507-17350) | |
| 49-259, gnl|loxAfr1|scaffold_1805 (17498-17657) | |
| 49-259, gnl|loxAfr1|scaffold_1805 (17501-17660) | |
| 49-259, gnl|mm7|chr10 (99320573-99320704) | |
| 49-259, gnl|mm7|chr10 (127840202-127839145) | |
| 49-259, gnl|mm7|chr10 (99320691-99320574) | |
| 49-259, gnl|mm7|chr10 (99320729-99320571) | |
| 49-259, gnl|Mm7|chr10 (127839253-127839456) | |
| 49-259, gnl|oryCun1|scaffold_128565 (2661-2534) | |
| 49-259, gnl|oryCun1|scaffold_128565 (2505-2660) | |
| 49-259, gnl|oryCun1|scaffold_128565 (2508-2663) | |
| 49-259, gnl|oryCun1|scaffold_186802 (49830-48700) | |
| 49-259, gnl|panTro1|chr10 (56230317-56231445) | |
| 49-259, gnl|panTro1|chr12 (66082441-66082601) | |
| 49-259, gnl|panTro1|chr20 (18994012-18994165) | |
| 49-259, gnl|panTro1|chr2_random (2164372-2164246) | |
| 49-259, gnl|rheMac2|chr11 (53373554-53374681) | |
| 49-259, gnl|rheMac2|chr13 (63900744-63900900) | |
| 49-259, gnl|rheMac2|chr2 (27445915-27446042) | |
| 49-259, gnl|rheMac2|chr2 (27446066-27445913) | |
| 49-259, gnl|rn3|chr7 (37436489-37436618) | |
| 49-259, gnl|rn3|chr7 (1627042-1625983) | |
| 49-259, gnl|rn3|chr7 (37436628-37436490) | |
| 49-259, gnl|rn3|chr7 (37436625-37436487) | |
| 303-1668, gnl|bosTau2|chr10 (64491348-64492711) | |
| 303-1668, gnl|Hg17|chr19 (18002523-18003884) | |
| 303-1668, gnl|Mm7|chr10 (99320524-99319145) |
| Expressed library(ies): 43 entry(ies) | More info |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
| pro (1.5361) | |
| hlv (1.11405) | |
| ssp (1.08416) | |
| cje (0.991408) | |
| elu (0.770713) | |
| nep (0.7357) | |
| ece (0.687916) | |
| nms (0.641574) | |
| ldo (0.582016) | |
| che (0.545256) | |
| fty (0.527519) | |
| cty (0.5204) | |
| hea (0.408998) | |
| sin (0.349895) | |
| pty (0.285429) | |
| ste (0.270416) | |
| pla (0.267344) | |
| cov (0.264306) | |
| ese (0.253004) | |
| eep (0.245128) | |
| mas (0.210305) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nco (0.161734) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| ova (0.129132) | |
| sug (0.127291) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (1.5361) | |
| hlv (1.11405) | |
| ssp (1.08416) | |
| cje (0.991408) | |
| elu (0.770713) | |
| nep (0.7357) | |
| ece (0.687916) | |
| nms (0.641574) | |
| ldo (0.582016) | |
| che (0.545256) | |
| fty (0.527519) | |
| cty (0.5204) | |
| hea (0.408998) | |
| sin (0.349895) | |
| pty (0.285429) | |
| ste (0.270416) | |
| pla (0.267344) | |
| cov (0.264306) | |
| ese (0.253004) | |
| eep (0.245128) | |
| mas (0.210305) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nco (0.161734) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| ova (0.129132) | |
| sug (0.127291) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |