Ss1.1-Tes1-TES01G040045.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCCCTTACTAGACATGGCGCTGGCCAGCGTGTTGGAGAGGCCGCTGGCCGTGAATCGGC GCGGGTTTTTCGGATTTGGGGGTCGTGCGGATCTGCTGGACCTGGGTCCGGGGAGCCCTG GCGATGGGCTGAGCCTGGTCGCGCCCAGCTGGGGTGTCCCAGAGGAGCCAAGAATCGAAA TGCTTCACGGTACCACCACTCTGGCCTTCAAGTTTCTCCATGGAGTCATTGTTGCAGCAG ACTCCCGGGCCACAGCAGGTGCCTACATTGCCTCCCAGACAGTAAAGAAAGTGATAGAGA TCAACCCGTACCTGCTGGGCACCATGGCTGGGGGTGCAGCGGATTGCAGCTTCTGGGAGC GGCTCTTGGCTCGGCAGTGTCGAATCTATGAGCTTCGAAACAAGGAACGAATTTCGGTAG CAGCTGCCTCCAAGCTGCTTGCCAACATGGTGTATCAGTACAAAGGCATGGGGCTGTCCA TGGGCACCATGATCTGTGGCTGGGATAAGAGAGGCCCTGGCCTCTACTACGTGGACAGTG AAGGAAACCGGATCTCAGGGGCCACCTTCTCTGTAGGTTCTGGCTCTGTGTATGCCTATG GTGTCATGGATCGGGGTTACTCCTATGACCTGGAGGTGGAACAGGCTTATGATCTGGCCC GTCGAGCCATCTACCAAGCCACCTACAGAGATGCCTACTCAGGAGGCTCGGTCAACCTCT ACCATGTCCGGGAGGATGGCTGGATCCGTGTCTCCAGTGACAATGTAGCTGATCTACACG ACAAGTATAGTGAATCTACTCCCTGAAAGAGGGAGGATGCGGCTGCTTGCATTTCTTGGG GTGACTGTTGGTGATTTGGCAATACAGCTCGCCATACTCTAATGGCAGGGTCCCCGATTG TATCCATCGTTTTTTTTTTTTAAGCTCTGGTGCATTGACCTCCATGTGTTACCAGTTGTT AATGAGCTGCTGCAGAGGTAATTATTTGTTTTATTTTCTTGGATGTTAACATTACACTAC TCAGCCTCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCCCTTACTAGACATGGCGCTGGCCAGCGTGTTGGAGAGGCCGCTGGCCGTGAATCGGC GCGGGTTTTTCGGATTTGGGGGTCGTGCGGATCTGCTGGACCTGGGTCCGGGGAGCCCTG GCGATGGGCTGAGCCTGGTCGCGCCCAGCTGGGGTGTCCCAGAGGAGCCAAGAATCGAAA TGCTTCACGGTACCACCACTCTGGCCTTCAAGTTTCTCCATGGAGTCATTGTTGCAGCAG ACTCCCGGGCCACAGCAGGTGCCTACATTGCCTCCCAGACAGTAAAGAAAGTGATAGAGA TCAACCCGTACCTGCTGGGCACCATGGCTGGGGGTGCAGCGGATTGCAGCTTCTGGGAGC GGCTCTTGGCTCGGCAGTGTCGAATCTATGAGCTTCGAAACAAGGAACGAATTTCGGTAG CAGCTGCCTCCAAGCTGCTTGCCAACATGGTGTATCAGTACAAAGGCATGGGGCTGTCCA TGGGCACCATGATCTGTGGCTGGGATAAGAGAGGCCCTGGCCTCTACTACGTGGACAGTG AAGGAAACCGGATCTCAGGGGCCACCTTCTCTGTAGGTTCTGGCTCTGTGTATGCCTATG GTGTCATGGATCGGGGTTACTCCTATGACCTGGAGGTGGAACAGGCTTATGATCTGGCCC GTCGAGCCATCTACCAAGCCACCTACAGAGATGCCTACTCAGGAGGCTCGGTCAACCTCT ACCATGTCCGGGAGGATGGCTGGATCCGTGTCTCCAGTGACAATGTAGCTGATCTACACG ACAAGTATAGTGAATCTACTCCCTGAAAGAGGGAGGATGCGGCTGCTTGCATTTCTTGGG GTGACTGTTGGTGATTTGGCAATACAGCTCGCCATACTCTAATGGCAGGGTCCCCGATTG TATCCATCGTTTTTTTTTTTTAAGCTCTGGTGCATTGACCTCCATGTGTTACCAGTTGTT AATGAGCTGCTGCAGAGGTAATTATTTGTTTTATTTTCTTGGATGTTAACATTACACTAC TCAGCCTCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 3-212, gnl|bosTau2|chr10 (14022242-14022451) | |
| 3-212, gnl|Hg17|chr14 (22573942-22573733) | |
| 3-212, gnl|Mm7|chr14 (49484570-49484361) | |
| 393-510, gnl|bosTau2|chr23 (5523741-5523624) | |
| 393-510, gnl|canFam2|chr12 (5424293-5424420) | |
| 393-510, gnl|danRer3|chr19 (1928469-1928596) | |
| 393-510, gnl|dasNov1|scaffold_285246 (31-157) | |
| 393-510, gnl|echTel1|scaffold_276379 (85701-85828) | |
| 393-510, gnl|fr1|chrUn (307242735-307242608) | |
| 393-510, gnl|hg17|chr6 (32917888-32918015) | |
| 393-510, gnl|Hg17|chr6 (32918008-32917891) | |
| 393-510, gnl|loxAfr1|scaffold_80907 (4120-4247) | |
| 393-510, gnl|Mm7|chr11 (102768585-102768468) | |
| 393-510, gnl|mm7|chr17 (32280115-32279988) | |
| 393-510, gnl|monDom2|scaffold_42 (15678249-15678122) | |
| 393-510, gnl|oryCun1|scaffold_197733 (5813-5684) | |
| 393-510, gnl|panTro1|chr5 (33358219-33358347) | |
| 393-510, gnl|rheMac2|chr4 (32538387-32538514) | |
| 393-510, gnl|rn3|chr20 (4787692-4787819) | |
| 393-510, gnl|tetNig1|chrUn_random (10583188-10583061) | |
| 393-510, gnl|xenTro1|scaffold_1316 (193695-193822) | |
| 519-1029, gnl|bosTau2|chr10 (14026857-14027367) | |
| 519-1029, gnl|Hg17|chr14 (22565425-22564900) | |
| 519-1029, gnl|Mm7|chr14 (49480922-49480108) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-212, gnl|bosTau2|chr10 (14022242-14022451) | |
| 3-212, gnl|Hg17|chr14 (22573942-22573733) | |
| 3-212, gnl|Mm7|chr14 (49484570-49484361) | |
| 393-510, gnl|bosTau2|chr23 (5523741-5523624) | |
| 393-510, gnl|canFam2|chr12 (5424293-5424420) | |
| 393-510, gnl|danRer3|chr19 (1928469-1928596) | |
| 393-510, gnl|dasNov1|scaffold_285246 (31-157) | |
| 393-510, gnl|echTel1|scaffold_276379 (85701-85828) | |
| 393-510, gnl|fr1|chrUn (307242735-307242608) | |
| 393-510, gnl|hg17|chr6 (32917888-32918015) | |
| 393-510, gnl|Hg17|chr6 (32918008-32917891) | |
| 393-510, gnl|loxAfr1|scaffold_80907 (4120-4247) | |
| 393-510, gnl|Mm7|chr11 (102768585-102768468) | |
| 393-510, gnl|mm7|chr17 (32280115-32279988) | |
| 393-510, gnl|monDom2|scaffold_42 (15678249-15678122) | |
| 393-510, gnl|oryCun1|scaffold_197733 (5813-5684) | |
| 393-510, gnl|panTro1|chr5 (33358219-33358347) | |
| 393-510, gnl|rheMac2|chr4 (32538387-32538514) | |
| 393-510, gnl|rn3|chr20 (4787692-4787819) | |
| 393-510, gnl|tetNig1|chrUn_random (10583188-10583061) | |
| 393-510, gnl|xenTro1|scaffold_1316 (193695-193822) | |
| 519-1029, gnl|bosTau2|chr10 (14026857-14027367) | |
| 519-1029, gnl|Hg17|chr14 (22565425-22564900) | |
| 519-1029, gnl|Mm7|chr14 (49480922-49480108) |
| Expressed library(ies): 49 entry(ies) | More info |
| Expressed library(ies): 49 entry(ies) | Help | Less info |
| eep (0.735384) | |
| fbs (0.701385) | |
| nca (0.684369) | |
| cst (0.560146) | |
| ssp (0.542079) | |
| ill (0.526778) | |
| cki (0.495704) | |
| cje (0.495704) | |
| nco (0.485201) | |
| ebs (0.473205) | |
| med (0.465008) | |
| ece (0.45861) | |
| cag (0.453583) | |
| hea (0.408998) | |
| che (0.408942) | |
| col (0.390016) | |
| duo (0.345602) | |
| fhi (0.339155) | |
| cli (0.305623) | |
| eli (0.303628) | |
| eje (0.296501) | |
| fat (0.294855) | |
| fce (0.271592) | |
| mas (0.210305) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sto (0.179824) | |
| ton (0.1755) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 49 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.735384) | |
| fbs (0.701385) | |
| nca (0.684369) | |
| cst (0.560146) | |
| ssp (0.542079) | |
| ill (0.526778) | |
| cki (0.495704) | |
| cje (0.495704) | |
| nco (0.485201) | |
| ebs (0.473205) | |
| med (0.465008) | |
| ece (0.45861) | |
| cag (0.453583) | |
| hea (0.408998) | |
| che (0.408942) | |
| col (0.390016) | |
| duo (0.345602) | |
| fhi (0.339155) | |
| cli (0.305623) | |
| eli (0.303628) | |
| eje (0.296501) | |
| fat (0.294855) | |
| fce (0.271592) | |
| mas (0.210305) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sto (0.179824) | |
| ton (0.1755) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) |