Non-Coding RNA Search

Ss1.1-Tes1-TES01G040057.5

Sequence:


               
               GTTCCGTGGTGAGGCACAGCAAATTCTGGGAAGACCCAGCTGGGTTAAAATGGTAAATTT
TACGTGGCGTCTATTTCACCAGCCTTCAAAACAAAGTACTGCAAGTGCGATAGTCTGAAC
TCAGAGCCTGGGACAGGAAGCACGTGACTCGGGAGAGGAGTCAGCCTGCACTCACCCAAT
AGCTCGCAGCCCCGGGAACCAGCAGCAGTTGGAAGCTGGACCCCGGCCACCCTCCTGCTC
CATCACAGCCGCACTCCTCCGCAGGTGACAGGCGGTCCTCGGCTCTTTCCTGCCAGCCCG
TGGGTGCCACTCAAGATGTCCCCTTTTGATTCCTGGGGACTGTTCATGGCCTTTCTCGCC
CTGCTCTGCTGCCCAGGGTCTGGCAAGGAGGCGTTCGAGAAACCCACGTGGACGAAGCAG
CTGGTGGTGGAGTCTGGAAGGTCCCAGGTGATTAACTGTAGTGCCAGCTGTACTCAGCCT
GAGAACAGTGGTCTGGAGACCACCGTCTCCAAGAAGCTCCTGAAAGAGGGGGCTCAGTGG
AAGCTGTATGAGGTCAATGTCTCCCAGGACACCATCCTCCTTTGCTATTTCACCTGCTCC
GGCAGGCAGGAGATCAAGAGATTCAACATCAGCGTGTTCTCCCCTCCAAAGCAAGTGCTG
CTGACGCTGCAGCCCACTTTTGTGACCGTAGGGACATGGTTCACCATCGAGTGCCGGGTG
CCCTCTGTGGCCCCCTTTGAAACCCTCACCATCACCCTGCTCCGTGGCAGTGAGATTTTG
TACAATGAGACTCTAAGAGGGACCACACCGTCCCCCCAGGAGGCTATAGTGACCCACAAC
ACCACAGCCCTCAGGAAAGATGGGCACCACAACTTCACCTGCCAGGCCAAGATGGATCTG
CAGTCTCGCGGCGGACACCTCATTCACAGAGTCTCAGATCCCCAGGTGCTTGAGGTCTAT
GAACCCTTTCAAGACAGCCAGATGGCCATCATCATCGCGGTCGTGTCCGTGCTGCTCTTC
TTGTTTGTGGCATCTGTCCTGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCGTGGTGAGGCACAGCAAATTCTGGGAAGACCCAGCTGGGTTAAAATGGTAAATTT
TACGTGGCGTCTATTTCACCAGCCTTCAAAACAAAGTACTGCAAGTGCGATAGTCTGAAC
TCAGAGCCTGGGACAGGAAGCACGTGACTCGGGAGAGGAGTCAGCCTGCACTCACCCAAT
AGCTCGCAGCCCCGGGAACCAGCAGCAGTTGGAAGCTGGACCCCGGCCACCCTCCTGCTC
CATCACAGCCGCACTCCTCCGCAGGTGACAGGCGGTCCTCGGCTCTTTCCTGCCAGCCCG
TGGGTGCCACTCAAGATGTCCCCTTTTGATTCCTGGGGACTGTTCATGGCCTTTCTCGCC
CTGCTCTGCTGCCCAGGGTCTGGCAAGGAGGCGTTCGAGAAACCCACGTGGACGAAGCAG
CTGGTGGTGGAGTCTGGAAGGTCCCAGGTGATTAACTGTAGTGCCAGCTGTACTCAGCCT
GAGAACAGTGGTCTGGAGACCACCGTCTCCAAGAAGCTCCTGAAAGAGGGGGCTCAGTGG
AAGCTGTATGAGGTCAATGTCTCCCAGGACACCATCCTCCTTTGCTATTTCACCTGCTCC
GGCAGGCAGGAGATCAAGAGATTCAACATCAGCGTGTTCTCCCCTCCAAAGCAAGTGCTG
CTGACGCTGCAGCCCACTTTTGTGACCGTAGGGACATGGTTCACCATCGAGTGCCGGGTG
CCCTCTGTGGCCCCCTTTGAAACCCTCACCATCACCCTGCTCCGTGGCAGTGAGATTTTG
TACAATGAGACTCTAAGAGGGACCACACCGTCCCCCCAGGAGGCTATAGTGACCCACAAC
ACCACAGCCCTCAGGAAAGATGGGCACCACAACTTCACCTGCCAGGCCAAGATGGATCTG
CAGTCTCGCGGCGGACACCTCATTCACAGAGTCTCAGATCCCCAGGTGCTTGAGGTCTAT
GAACCCTTTCAAGACAGCCAGATGGCCATCATCATCGCGGTCGTGTCCGTGCTGCTCTTC
TTGTTTGTGGCATCTGTCCTGCTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|48675933|ref|NP_001001631.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|48675933|ref|NP_001001631.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               748-866, + strand, RNAz p=0.791496

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               748-866, + strand, RNAz p=0.791496

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               365-640, gnl|bosTau2|chr19 (40711060-40710782)
               

               
               365-640, gnl|Hg17|chr17 (59436477-59436199)
               

               
               365-640, gnl|Mm7|chr11 (106391816-106392094)
               


               
               642-957, gnl|bosTau2|chr19 (40678868-40678553)
               

               
               642-957, gnl|canFam2|chr9 (15030306-15030739)
               

               
               642-957, gnl|dasNov1|scaffold_7510 (44753-44368)
               

               
               642-957, gnl|echTel1|scaffold_319077 (42437-42808)
               

               
               642-957, gnl|hg17|chr17 (59434691-59435078)
               

               
               642-957, gnl|Hg17|chr17 (59435055-59434740)
               

               
               642-957, gnl|loxAfr1|scaffold_26367 (6164-6545)
               

               
               642-957, gnl|mm7|chr11 (106487640-106488026)
               

               
               642-957, gnl|Mm7|chr11 (106488003-106487691)
               

               
               642-957, gnl|monDom2|scaffold_18 (35466186-35465741)
               

               
               642-957, gnl|oryCun1|scaffold_125757 (3106-3495)
               

               
               642-957, gnl|panTro1|chr19 (45710680-45710293)
               

               
               642-957, gnl|rheMac2|chr16 (59558041-59558428)
               

               
               642-957, gnl|rn3|chr10 (95787749-95788134)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               365-640, gnl|bosTau2|chr19 (40711060-40710782)
               

               
               365-640, gnl|Hg17|chr17 (59436477-59436199)
               

               
               365-640, gnl|Mm7|chr11 (106391816-106392094)
               


               
               642-957, gnl|bosTau2|chr19 (40678868-40678553)
               

               
               642-957, gnl|canFam2|chr9 (15030306-15030739)
               

               
               642-957, gnl|dasNov1|scaffold_7510 (44753-44368)
               

               
               642-957, gnl|echTel1|scaffold_319077 (42437-42808)
               

               
               642-957, gnl|hg17|chr17 (59434691-59435078)
               

               
               642-957, gnl|Hg17|chr17 (59435055-59434740)
               

               
               642-957, gnl|loxAfr1|scaffold_26367 (6164-6545)
               

               
               642-957, gnl|mm7|chr11 (106487640-106488026)
               

               
               642-957, gnl|Mm7|chr11 (106488003-106487691)
               

               
               642-957, gnl|monDom2|scaffold_18 (35466186-35465741)
               

               
               642-957, gnl|oryCun1|scaffold_125757 (3106-3495)
               

               
               642-957, gnl|panTro1|chr19 (45710680-45710293)
               

               
               642-957, gnl|rheMac2|chr16 (59558041-59558428)
               

               
               642-957, gnl|rn3|chr10 (95787749-95788134)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               nlu (0.191681)
               

               
               csp (0.161186)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               csp (0.161186)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)

	365-640, gnl\|bosTau2\|chr19 (40711060-40710782)
	365-640, gnl\|Hg17\|chr17 (59436477-59436199)
	365-640, gnl\|Mm7\|chr11 (106391816-106392094)

	642-957, gnl\|bosTau2\|chr19 (40678868-40678553)
	642-957, gnl\|canFam2\|chr9 (15030306-15030739)
	642-957, gnl\|dasNov1\|scaffold_7510 (44753-44368)
	642-957, gnl\|echTel1\|scaffold_319077 (42437-42808)
	642-957, gnl\|hg17\|chr17 (59434691-59435078)
	642-957, gnl\|Hg17\|chr17 (59435055-59434740)
	642-957, gnl\|loxAfr1\|scaffold_26367 (6164-6545)
	642-957, gnl\|mm7\|chr11 (106487640-106488026)
	642-957, gnl\|Mm7\|chr11 (106488003-106487691)
	642-957, gnl\|monDom2\|scaffold_18 (35466186-35465741)
	642-957, gnl\|oryCun1\|scaffold_125757 (3106-3495)
	642-957, gnl\|panTro1\|chr19 (45710680-45710293)
	642-957, gnl\|rheMac2\|chr16 (59558041-59558428)
	642-957, gnl\|rn3\|chr10 (95787749-95788134)

	nlu (0.191681)
	csp (0.161186)
	cov (0.132153)
	cly (0.120642)
	med (0.116252)