Ss1.1-Tes1-TES01G050106.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTATGCTGAGTCCCGGCGTGGAGAGTCAGCTCTACAAGCTGCCCTGGGTGTGTGAGGA GGGGACCGGGTCCACCGTTATCCTGCAGGGCCACATCGACTGCGGCTCCCTGCTCGGCCA CCGCGCCGTCTACCGCATGTGCTTCGCTATGGCAGCCTTCTTCTTCCTTTTCACCCTGCT CATGATCTGCGTGCGCAGCAGCCGAGACCCCAGGGCCGCCATCCAGAACGGGTTTTGGTT CTTTAAGTTCCTGATTTTCGTGGGCATCACTGTGGGTGCCTTCTACATCCCTGATGGCTC CTTCTCAAACATCTGGTTCTACTTTGGCGTCGCGGGCTCCTTTGTCTTCTTCCTCATCCA GCTGGTGCTGCTCATCGACTTTGCGCACTCCTGGAACCAGCGGTGGCTGGGCAAGGCTGA GGAGTGTGACTCCCGAGCCTGGTACGCAGGCCTCTTCTTCTTCACCCTCCTCTTCTATGC GTTGTCCATTACGGCCGTGGCGCTGCTGTTTGTCTACTACACCCAGCCCGACGCCTGCTA TGAGAGCAAGGTCTTCATTGGCCTCAACCTCACTCTCTGTGTCTGTGTCTCCATAGTCGC CGTTCTGCCCAAGATCCAGGATGCCCAGCCCAACTCCGGTCTGCTGCAGGCCTCAGTCAT CACACTCTACACCATGTTTGTCACCTGGCTGGCCTTATCCAATGTCCCTGACCAGAAATG CAACCCCCACCTGCTGACCCACTTTGGCAACTGGACAGCCCTGGCAGGCCACGAGGGCTA TGAGACCCAGTGGTGGGACGCACCGAGCATCGTGGGCCTCGTTGTCTTCATCCTGTGCAC CCTCTTCATCAGCCTGCGCTCCTCCGACCACCGGCAGGTGAACAGCCTGATGCAGACAGA GGAGTGCCCGCCGGTGCTGGAGGCCACGCAGCAGCAGCAGGTGACAGTCAGCGAGGGCCG GGCCTTCGACAACGAGCAGGACGGAGTCACCTACAGCTACTCCTTCTTCCACTTCTGCCT GGTGCTGGCCTCTCTGCATGTCATGATGACACTCACCAATTGGTACAGACCCGGTGAGAC CCGGAAGATGATCAGCACGTGGACCGCCGTGTGGGTGAAGATCTGTGCCAGCTGGGCCGG GCTGCTCCTCTACCTGTGGACCCTGGTAGCCCCCCTCCTCCTGCCCAACCGCGACTTCAG CTGAGGCCCCCTGCAGCCAGCCCACCTGGTGCCTCGGGGTTCAGTGACAGCCAGGCTGAG CCCTCACCCTGCCCCACCTCCGGGACATGCCCCTGAGCTGGGACCCTCTTAGTGCCTTCG GGGAGGAGGAGCATCAGGCCTGTCCCTCCTGCTCCCCCGCTCCCCCAGCTGCCTCATTTC CCCTTGCCCCCACTTGCCCTCTTGGGAAAAAAGGGCCCCTTGTTTTAAGGCTCCCCAGGA GAGGGTCCTGAAGGAGAGAAATGCTGAGAGCTGCTCAGAGAAGGGGAGCGCTCGCCTCCA TGGGGTGCCCAGCACTTAGGCCCAGGTATTCCTGACCACGTCCCCCAGGGCGCCCCGTCC CCCTACTGGACTCTGTGCCTTACTGAGTCTCTAAGACTCTGCCAATAAAGAAGCCAGTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTATGCTGAGTCCCGGCGTGGAGAGTCAGCTCTACAAGCTGCCCTGGGTGTGTGAGGA GGGGACCGGGTCCACCGTTATCCTGCAGGGCCACATCGACTGCGGCTCCCTGCTCGGCCA CCGCGCCGTCTACCGCATGTGCTTCGCTATGGCAGCCTTCTTCTTCCTTTTCACCCTGCT CATGATCTGCGTGCGCAGCAGCCGAGACCCCAGGGCCGCCATCCAGAACGGGTTTTGGTT CTTTAAGTTCCTGATTTTCGTGGGCATCACTGTGGGTGCCTTCTACATCCCTGATGGCTC CTTCTCAAACATCTGGTTCTACTTTGGCGTCGCGGGCTCCTTTGTCTTCTTCCTCATCCA GCTGGTGCTGCTCATCGACTTTGCGCACTCCTGGAACCAGCGGTGGCTGGGCAAGGCTGA GGAGTGTGACTCCCGAGCCTGGTACGCAGGCCTCTTCTTCTTCACCCTCCTCTTCTATGC GTTGTCCATTACGGCCGTGGCGCTGCTGTTTGTCTACTACACCCAGCCCGACGCCTGCTA TGAGAGCAAGGTCTTCATTGGCCTCAACCTCACTCTCTGTGTCTGTGTCTCCATAGTCGC CGTTCTGCCCAAGATCCAGGATGCCCAGCCCAACTCCGGTCTGCTGCAGGCCTCAGTCAT CACACTCTACACCATGTTTGTCACCTGGCTGGCCTTATCCAATGTCCCTGACCAGAAATG CAACCCCCACCTGCTGACCCACTTTGGCAACTGGACAGCCCTGGCAGGCCACGAGGGCTA TGAGACCCAGTGGTGGGACGCACCGAGCATCGTGGGCCTCGTTGTCTTCATCCTGTGCAC CCTCTTCATCAGCCTGCGCTCCTCCGACCACCGGCAGGTGAACAGCCTGATGCAGACAGA GGAGTGCCCGCCGGTGCTGGAGGCCACGCAGCAGCAGCAGGTGACAGTCAGCGAGGGCCG GGCCTTCGACAACGAGCAGGACGGAGTCACCTACAGCTACTCCTTCTTCCACTTCTGCCT GGTGCTGGCCTCTCTGCATGTCATGATGACACTCACCAATTGGTACAGACCCGGTGAGAC CCGGAAGATGATCAGCACGTGGACCGCCGTGTGGGTGAAGATCTGTGCCAGCTGGGCCGG GCTGCTCCTCTACCTGTGGACCCTGGTAGCCCCCCTCCTCCTGCCCAACCGCGACTTCAG CTGAGGCCCCCTGCAGCCAGCCCACCTGGTGCCTCGGGGTTCAGTGACAGCCAGGCTGAG CCCTCACCCTGCCCCACCTCCGGGACATGCCCCTGAGCTGGGACCCTCTTAGTGCCTTCG GGGAGGAGGAGCATCAGGCCTGTCCCTCCTGCTCCCCCGCTCCCCCAGCTGCCTCATTTC CCCTTGCCCCCACTTGCCCTCTTGGGAAAAAAGGGCCCCTTGTTTTAAGGCTCCCCAGGA GAGGGTCCTGAAGGAGAGAAATGCTGAGAGCTGCTCAGAGAAGGGGAGCGCTCGCCTCCA TGGGGTGCCCAGCACTTAGGCCCAGGTATTCCTGACCACGTCCCCCAGGGCGCCCCGTCC CCCTACTGGACTCTGTGCCTTACTGAGTCTCTAAGACTCTGCCAATAAAGAAGCCAGTGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 447-1606, - strand, RNAz p=0.98832 | |
| 1293-1382, - strand, RNAz p=0.82047 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 447-1606, - strand, RNAz p=0.98832 | |
| 1293-1382, - strand, RNAz p=0.82047 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 33-233, gnl|bosTau2|chr2 (75579889-75580090) | |
| 33-233, gnl|Hg17|chr1 (31566614-31566815) | |
| 33-233, gnl|Mm7|chr4 (129709107-129708906) | |
| 447-620, gnl|bosTau2|chr2 (75581725-75581898) | |
| 447-620, gnl|Hg17|chr1 (31568591-31568764) | |
| 447-620, gnl|Mm7|chr4 (129705462-129705289) | |
| 706-852, gnl|bosTau2|chr2 (75583881-75584027) | |
| 706-852, gnl|Hg17|chr1 (31571332-31571478) | |
| 706-852, gnl|Mm7|chr4 (129703015-129702875) | |
| 1061-1620, gnl|bosTau2|chr2 (75586245-75586820) | |
| 1061-1620, gnl|Hg17|chr1 (31575996-31576610) | |
| 1061-1620, gnl|Mm7|chr4 (129698720-129698143) | |
| 1081-1207, gnl|bosTau2|chr13 (56254382-56254508) | |
| 1081-1207, gnl|canFam2|chr24 (34935957-34936113) | |
| 1081-1207, gnl|danRer3|chr20 (47812990-47812829) | |
| 1081-1207, gnl|dasNov1|scaffold_62188 (484-341) | |
| 1081-1207, gnl|echTel1|scaffold_181960 (651-524) | |
| 1081-1207, gnl|fr1|chrUn (257835227-257835063) | |
| 1081-1207, gnl|galGal2|chr20 (5134643-5134483) | |
| 1081-1207, gnl|hg17|chr20 (42562345-42562510) | |
| 1081-1207, gnl|Hg17|chr20 (42562474-42562346) | |
| 1081-1207, gnl|loxAfr1|scaffold_20909 (10256-10093) | |
| 1081-1207, gnl|mm7|chr2 (163366326-163366490) | |
| 1081-1207, gnl|Mm7|chr2 (163366454-163366327) | |
| 1081-1207, gnl|monDom2|scaffold_1 (157303085-157302924) | |
| 1081-1207, gnl|oryCun1|scaffold_176362 (59455-59619) | |
| 1081-1207, gnl|panTro1|chr21 (45003132-45003297) | |
| 1081-1207, gnl|rheMac2|chr10 (19949226-19949061) | |
| 1081-1207, gnl|rn3|chr3 (154446457-154446622) | |
| 1081-1207, gnl|tetNig1|chr21 (5658440-5658585) | |
| 1081-1207, gnl|xenTro1|scaffold_184 (590715-590886) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 33-233, gnl|bosTau2|chr2 (75579889-75580090) | |
| 33-233, gnl|Hg17|chr1 (31566614-31566815) | |
| 33-233, gnl|Mm7|chr4 (129709107-129708906) | |
| 447-620, gnl|bosTau2|chr2 (75581725-75581898) | |
| 447-620, gnl|Hg17|chr1 (31568591-31568764) | |
| 447-620, gnl|Mm7|chr4 (129705462-129705289) | |
| 706-852, gnl|bosTau2|chr2 (75583881-75584027) | |
| 706-852, gnl|Hg17|chr1 (31571332-31571478) | |
| 706-852, gnl|Mm7|chr4 (129703015-129702875) | |
| 1061-1620, gnl|bosTau2|chr2 (75586245-75586820) | |
| 1061-1620, gnl|Hg17|chr1 (31575996-31576610) | |
| 1061-1620, gnl|Mm7|chr4 (129698720-129698143) | |
| 1081-1207, gnl|bosTau2|chr13 (56254382-56254508) | |
| 1081-1207, gnl|canFam2|chr24 (34935957-34936113) | |
| 1081-1207, gnl|danRer3|chr20 (47812990-47812829) | |
| 1081-1207, gnl|dasNov1|scaffold_62188 (484-341) | |
| 1081-1207, gnl|echTel1|scaffold_181960 (651-524) | |
| 1081-1207, gnl|fr1|chrUn (257835227-257835063) | |
| 1081-1207, gnl|galGal2|chr20 (5134643-5134483) | |
| 1081-1207, gnl|hg17|chr20 (42562345-42562510) | |
| 1081-1207, gnl|Hg17|chr20 (42562474-42562346) | |
| 1081-1207, gnl|loxAfr1|scaffold_20909 (10256-10093) | |
| 1081-1207, gnl|mm7|chr2 (163366326-163366490) | |
| 1081-1207, gnl|Mm7|chr2 (163366454-163366327) | |
| 1081-1207, gnl|monDom2|scaffold_1 (157303085-157302924) | |
| 1081-1207, gnl|oryCun1|scaffold_176362 (59455-59619) | |
| 1081-1207, gnl|panTro1|chr21 (45003132-45003297) | |
| 1081-1207, gnl|rheMac2|chr10 (19949226-19949061) | |
| 1081-1207, gnl|rn3|chr3 (154446457-154446622) | |
| 1081-1207, gnl|tetNig1|chr21 (5658440-5658585) | |
| 1081-1207, gnl|xenTro1|scaffold_184 (590715-590886) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| nbm (0.297974) | |
| pty (0.285429) | |
| ute (0.265569) | |
| med (0.232504) | |
| nms (0.213858) | |
| col (0.195008) | |
| eye (0.170503) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.297974) | |
| pty (0.285429) | |
| ute (0.265569) | |
| med (0.232504) | |
| nms (0.213858) | |
| col (0.195008) | |
| eye (0.170503) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |