Non-Coding RNA Search

Ss1.1-Tes1-TES01G060007.5

Sequence:


               
               TGAGTCACGTGTTGGGGGGAAGCGGGAAGGCGTCGTTCTTCTTTCCTAGCCCCCCCAACC
GCCATGTTTTCAGGCCCGGTCAGCTTTGGTCTTTCCCCGTAAGGAAATGGCCGGGGCGCT
TCAGGGAACCCAAGCGCTGTTGCCTCGGCGGAGCCCGGGCTGACGAGGCAGTGCAGCGGG
GTAAACCGGAGCAGTTCTGCGCAGGGTGGGGAGGCCATGGCGTCTGGCAGTAATTGGCTG
TCCGGCGTGAATGTCGTGCTGGTGATGGCCTACGGGAGCCTGGTGTTTGTACTGCTATTT
ATTTTTGTGAAGAGGCAAATCATGCGCTTTGCAATGAAATCCCGAAGGGGCCCTCATGTC
CCTGTGGGACACAATGCTCCCAAGGACTTAAAAGAGGAGATTGATATCCGACTATCCAGG
GTTCAGGATATCAAGTATGAACCTCAGCTCCTTGCAGATGATGATGCAAGACTATTACAG
CTGGAAACCCAGGGAAATCAAAGTTGCTACAACTATCTATACAGGATGAAAGCTCTGGAT
GCCATCCGTGCCTCTGAGATCCCATTTCATGCTGAAGGCCGGCATCCTCGTTCCTTAATG
GGCAAGAATTTCCGCTCCTACCTGCTAGATCTTCGAAACACTAGTACTCCTTTCAAGGGT
GTGCGCAAGGCCCTCATTGACACCCTGCTGGATGGCTATGAGACAGCCCGCTATGGGACA
GGGGTCTTTGGCCAGAGTGAGTACCTGCGCTATCAGGAAGCCCTGAGTGAGCTGGCCACA
GTGGTCAAAGCACGAAGTGGGAGCTCTCAGCGACAACACCAGTCAGCAGCCAAAGACCTA
ACCCAGTCTCCTGAAGTCTCCCCAACAACCATCCAGGTGACATACCTCCCCTCCAGCCAG
AAGAGTAAACGTGCCAAGCACTTCCTTGAATTGAAGAGCTTTAAGGACAACTATAACACA
TTGGAGAGTACTCTGTGATGCGGCTGAAGGACTCTCTGTTGATGGAGCCAGACAGACTGC
AGCGTGCTTGCCCGGCAGCCCTCAGGTCATCTGGCTCAGCAACCCAGACTGGATCAGCTG
ACGCTCCAGTTGTGTTTAGAGCTCTTGCCTAGAAGATCATTCTCCAATGCTTTCCTCTGG
CCAGTTTCAGAGCATCAGTTAAGACTTTATTTTCCCTTGGTAGCACTTTTCTCTGGATTT
GAATTCATATGTTTTTCTTAATCTTTCTGTCAGAGGTTCCTTGAAAATCCTCACTTGATT
TTGATCATGGTTCATCTGCTCTTTTCCAGACTATAAATAAATCCTGAGGGTGAGAGTTGG
GGTGATGGGGCTTGGTGTCTTGTCTTCTGGATCGCCCCCTTTGTACACAGTTGAATGGGA
ACCATTTGGGTTTGAGACACCTAAGAGTTGATTAACAGAAAAAGCATACAGGAACTGGTG
GGGAGGTTAGGTGAGGCCATGAGTGGTATGTGGAACTTACTCTGGTGCTCCATCTAAATC
AGGCTGTGTTGAACCATTAACATAACTTTCCTGATATGCAAGGATCTGCCTTCCACTTCA
TTCCATATTGTCATGAATAAATTGGAAAGGGAATGTTTTGACACCTGACAAATTCCATCC
CCCCTCATTTGGGGATAGTGTGAGTGAAGGAATGGTAAGACCAATATACTGGTCTGACTT
TATAAATTATTTAATAAAATGTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGTCACGTGTTGGGGGGAAGCGGGAAGGCGTCGTTCTTCTTTCCTAGCCCCCCCAACC
GCCATGTTTTCAGGCCCGGTCAGCTTTGGTCTTTCCCCGTAAGGAAATGGCCGGGGCGCT
TCAGGGAACCCAAGCGCTGTTGCCTCGGCGGAGCCCGGGCTGACGAGGCAGTGCAGCGGG
GTAAACCGGAGCAGTTCTGCGCAGGGTGGGGAGGCCATGGCGTCTGGCAGTAATTGGCTG
TCCGGCGTGAATGTCGTGCTGGTGATGGCCTACGGGAGCCTGGTGTTTGTACTGCTATTT
ATTTTTGTGAAGAGGCAAATCATGCGCTTTGCAATGAAATCCCGAAGGGGCCCTCATGTC
CCTGTGGGACACAATGCTCCCAAGGACTTAAAAGAGGAGATTGATATCCGACTATCCAGG
GTTCAGGATATCAAGTATGAACCTCAGCTCCTTGCAGATGATGATGCAAGACTATTACAG
CTGGAAACCCAGGGAAATCAAAGTTGCTACAACTATCTATACAGGATGAAAGCTCTGGAT
GCCATCCGTGCCTCTGAGATCCCATTTCATGCTGAAGGCCGGCATCCTCGTTCCTTAATG
GGCAAGAATTTCCGCTCCTACCTGCTAGATCTTCGAAACACTAGTACTCCTTTCAAGGGT
GTGCGCAAGGCCCTCATTGACACCCTGCTGGATGGCTATGAGACAGCCCGCTATGGGACA
GGGGTCTTTGGCCAGAGTGAGTACCTGCGCTATCAGGAAGCCCTGAGTGAGCTGGCCACA
GTGGTCAAAGCACGAAGTGGGAGCTCTCAGCGACAACACCAGTCAGCAGCCAAAGACCTA
ACCCAGTCTCCTGAAGTCTCCCCAACAACCATCCAGGTGACATACCTCCCCTCCAGCCAG
AAGAGTAAACGTGCCAAGCACTTCCTTGAATTGAAGAGCTTTAAGGACAACTATAACACA
TTGGAGAGTACTCTGTGATGCGGCTGAAGGACTCTCTGTTGATGGAGCCAGACAGACTGC
AGCGTGCTTGCCCGGCAGCCCTCAGGTCATCTGGCTCAGCAACCCAGACTGGATCAGCTG
ACGCTCCAGTTGTGTTTAGAGCTCTTGCCTAGAAGATCATTCTCCAATGCTTTCCTCTGG
CCAGTTTCAGAGCATCAGTTAAGACTTTATTTTCCCTTGGTAGCACTTTTCTCTGGATTT
GAATTCATATGTTTTTCTTAATCTTTCTGTCAGAGGTTCCTTGAAAATCCTCACTTGATT
TTGATCATGGTTCATCTGCTCTTTTCCAGACTATAAATAAATCCTGAGGGTGAGAGTTGG
GGTGATGGGGCTTGGTGTCTTGTCTTCTGGATCGCCCCCTTTGTACACAGTTGAATGGGA
ACCATTTGGGTTTGAGACACCTAAGAGTTGATTAACAGAAAAAGCATACAGGAACTGGTG
GGGAGGTTAGGTGAGGCCATGAGTGGTATGTGGAACTTACTCTGGTGCTCCATCTAAATC
AGGCTGTGTTGAACCATTAACATAACTTTCCTGATATGCAAGGATCTGCCTTCCACTTCA
TTCCATATTGTCATGAATAAATTGGAAAGGGAATGTTTTGACACCTGACAAATTCCATCC
CCCCTCATTTGGGGATAGTGTGAGTGAAGGAATGGTAAGACCAATATACTGGTCTGACTT
TATAAATTATTTAATAAAATGTAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5E943_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5E943_BOVIN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               59-171, - strand, RNAz p=0.994926
               

               
               332-451, + strand, RNAz p=0.667973

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               59-171, - strand, RNAz p=0.994926
               

               
               332-451, + strand, RNAz p=0.667973

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               52-1298, gnl|bosTau2|chr3 (13622584-13621341)
               

               
               52-1298, gnl|Hg17|chr9 (7865603-7864514)
               

               
               52-1298, gnl|Mm7|chr13_random (4821962-4820747)
               


               
               1362-1698, gnl|bosTau2|chr3 (8308637-8308308)
               

               
               1362-1698, gnl|Hg17|chr1 (150992613-150992285)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-1298, gnl|bosTau2|chr3 (13622584-13621341)
               

               
               52-1298, gnl|Hg17|chr9 (7865603-7864514)
               

               
               52-1298, gnl|Mm7|chr13_random (4821962-4820747)
               


               
               1362-1698, gnl|bosTau2|chr3 (8308637-8308308)
               

               
               1362-1698, gnl|Hg17|chr1 (150992613-150992285)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               clu (1.19646)
               

               
               csp (0.322373)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (1.19646)
               

               
               csp (0.322373)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	59-171, - strand, RNAz p=0.994926
	332-451, + strand, RNAz p=0.667973

	52-1298, gnl\|bosTau2\|chr3 (13622584-13621341)
	52-1298, gnl\|Hg17\|chr9 (7865603-7864514)
	52-1298, gnl\|Mm7\|chr13_random (4821962-4820747)

	1362-1698, gnl\|bosTau2\|chr3 (8308637-8308308)
	1362-1698, gnl\|Hg17\|chr1 (150992613-150992285)

	clu (1.19646)
	csp (0.322373)
	ecc (0.23007)
	spc (0.226732)
	mas (0.210305)
	aor (0.195274)
	nep (0.183925)
	duo (0.172801)
	cut (0.169924)
	nje (0.16592)
	cki (0.165235)
	tbr (0.154178)
	cag (0.151194)
	lun (0.150489)
	bfe (0.149858)
	lin (0.145603)
	lnt (0.142308)
	csk (0.140746)
	ssp (0.13552)
	pla (0.133672)
	cov (0.132153)
	pgl (0.118483)
	cty (0.10408)