Ss1.1-Tes1-TES01G070007.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGTGTACACGCATGTTTGACCAGAAGCAAGGGTGCTCAGCAAGAATGATGATCAGGAA AGACTTGAGGACTCCCTGCCAGAGAGCCTGAGGCTGACCGGCCAACCAATAGCCTGTCTG TTCGTAAGTCCTCCTGTTTGAGCAGCAGCCAAATCCAGTCTGACCCCAGCCTGTCTGTTT CTGTCCCCTGCAAAGCCATGTGGGTGTACCTGGCGGTCCTCGTGGGCCTGTACTACCTCC TGCGCTGGCAGCGGGAGAGGCAGGTGGTGAGCCACCTGAGGGACAAGTATGTCTTCATCA CGGGCTGTGACTCGGGCTTCGGGAACCTGCTGGCCAGGCAGCTGGACCTGCGGGGCTTGA GGGTCCTGGCTGCATGTCTGACGGAGCAGGGGGCCCAGCAGCTGAGGAAGCAGACGTCAG ACAGGCTGGAGACGGTGCTCCTGGACGTGACCAAGACAGAGAGCGTCGCTGCGGCCAAGG AGTGGGTGAAGGAGCGTGTGGGGGACAGAGGACTCTGGGGCCTGGTGAACAATGCTGGCA TTTGCATGCCCCTGGCTCCCAATGAGTGGCTGACCAAGCAGGACTTCATGGTGATGCTGG ATGTGAACCTGTTGGGGATGGTCGACGTGACCCTGCAGCTGCTGCCCCTCGTGAGGAAGA CCAAGGGCCGTGTGGTCAACGTCTCCAGTGTCATGGGCCGGGTGTCCCTCTTTGGCGGCG GCTACTGCCTGTCCAAGTACGGCGTTGAGGCCTTCTCAGACTCCCTCAGGAGGGAGCTCT CCTACTTTGGGGTGAAGGTGGCTGTGATCGAGCCTGGCTTCTTCATGACCAATATGACTG CCGCTGAGGTGTTTAATGGAAACCTCCAGGCAGCATGGCAGCAGGCCAGCCCAGAGGTCA AGGATCTCTATGGAGACGCATTCGTGGCTAACTTCATGAAGACATATGACCTATTGAAGC CCCAATGGTCTGGGAATCTGTCTTTGGTGACCAACTGCATGGAGCACGCCCTGACCTCCT GCCACCCCCGCACGCGATACACACCTGGCTGGGACGCCAAGTTCTTCTACCTCCCCATGA GCTACTTGCCCACCTTCCTCGTGGATCTCATGATGTACTATGGTGCCCCTAGGCCTGCTA AGGTCCTGTAACCCAAGACTGAGGTGCATGGCAGGGGGAGCTGGGGACCGTGTGAGGCGG GGATGCATCAGTGGGAGGGAAACAGAGTGGAGAGAGGGCTTCTCCCATCCCTGGGGACAC CCATGCCCCTCCTCCCCAGGCTCCTCTGGGGACATTACTCAGGACTCTGGGAATATTATG GAGAAGGGAACACGTTTTGTGGCTGAGTAACAGGGGCTGATAGCATAACCTGTGTCCTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGTGTACACGCATGTTTGACCAGAAGCAAGGGTGCTCAGCAAGAATGATGATCAGGAA AGACTTGAGGACTCCCTGCCAGAGAGCCTGAGGCTGACCGGCCAACCAATAGCCTGTCTG TTCGTAAGTCCTCCTGTTTGAGCAGCAGCCAAATCCAGTCTGACCCCAGCCTGTCTGTTT CTGTCCCCTGCAAAGCCATGTGGGTGTACCTGGCGGTCCTCGTGGGCCTGTACTACCTCC TGCGCTGGCAGCGGGAGAGGCAGGTGGTGAGCCACCTGAGGGACAAGTATGTCTTCATCA CGGGCTGTGACTCGGGCTTCGGGAACCTGCTGGCCAGGCAGCTGGACCTGCGGGGCTTGA GGGTCCTGGCTGCATGTCTGACGGAGCAGGGGGCCCAGCAGCTGAGGAAGCAGACGTCAG ACAGGCTGGAGACGGTGCTCCTGGACGTGACCAAGACAGAGAGCGTCGCTGCGGCCAAGG AGTGGGTGAAGGAGCGTGTGGGGGACAGAGGACTCTGGGGCCTGGTGAACAATGCTGGCA TTTGCATGCCCCTGGCTCCCAATGAGTGGCTGACCAAGCAGGACTTCATGGTGATGCTGG ATGTGAACCTGTTGGGGATGGTCGACGTGACCCTGCAGCTGCTGCCCCTCGTGAGGAAGA CCAAGGGCCGTGTGGTCAACGTCTCCAGTGTCATGGGCCGGGTGTCCCTCTTTGGCGGCG GCTACTGCCTGTCCAAGTACGGCGTTGAGGCCTTCTCAGACTCCCTCAGGAGGGAGCTCT CCTACTTTGGGGTGAAGGTGGCTGTGATCGAGCCTGGCTTCTTCATGACCAATATGACTG CCGCTGAGGTGTTTAATGGAAACCTCCAGGCAGCATGGCAGCAGGCCAGCCCAGAGGTCA AGGATCTCTATGGAGACGCATTCGTGGCTAACTTCATGAAGACATATGACCTATTGAAGC CCCAATGGTCTGGGAATCTGTCTTTGGTGACCAACTGCATGGAGCACGCCCTGACCTCCT GCCACCCCCGCACGCGATACACACCTGGCTGGGACGCCAAGTTCTTCTACCTCCCCATGA GCTACTTGCCCACCTTCCTCGTGGATCTCATGATGTACTATGGTGCCCCTAGGCCTGCTA AGGTCCTGTAACCCAAGACTGAGGTGCATGGCAGGGGGAGCTGGGGACCGTGTGAGGCGG GGATGCATCAGTGGGAGGGAAACAGAGTGGAGAGAGGGCTTCTCCCATCCCTGGGGACAC CCATGCCCCTCCTCCCCAGGCTCCTCTGGGGACATTACTCAGGACTCTGGGAATATTATG GAGAAGGGAACACGTTTTGTGGCTGAGTAACAGGGGCTGATAGCATAACCTGTGTCCTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 764-878, + strand, RNAz p=0.975165 | |
| 1172-1277, - strand, RNAz p=0.969273 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 764-878, + strand, RNAz p=0.975165 | |
| 1172-1277, - strand, RNAz p=0.969273 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 43-511, gnl|bosTau2|chr5 (32781870-32782338) | |
| 43-511, gnl|Hg17|chr12 (55637671-55637200) | |
| 366-477, gnl|bosTau2|chr3 (13486485-13486596) | |
| 366-477, gnl|Hg17|chr12 (55637345-55637234) | |
| 366-477, gnl|Mm7|chr10 (127325840-127325951) | |
| 764-933, gnl|bosTau2|chr5 (32745888-32746057) | |
| 764-933, gnl|Hg17|chr12 (55662212-55662038) | |
| 764-933, gnl|Mm7|chr10 (127314168-127314337) | |
| 767-917, gnl|bosTau2|chr5 (32718967-32719117) | |
| 767-917, gnl|canFam2|chr10 (4115671-4115821) | |
| 767-917, gnl|dasNov1|scaffold_2289 (84136-83986) | |
| 767-917, gnl|echTel1|scaffold_194817 (814-964) | |
| 767-917, gnl|hg17|chr12 (55662054-55662204) | |
| 767-917, gnl|Hg17|chr12 (55662204-55662054) | |
| 767-917, gnl|loxAfr1|scaffold_1651 (61878-62028) | |
| 767-917, gnl|mm7|chr10 (127266219-127266069) | |
| 767-917, gnl|Mm7|chr10 (127291574-127291724) | |
| 767-917, gnl|monDom2|scaffold_303 (18828-18978) | |
| 767-917, gnl|oryCun1|scaffold_179446 (7534-7384) | |
| 767-917, gnl|panTro1|chr10_random (22568258-22568108) | |
| 767-917, gnl|rheMac2|chr11 (54044742-54044893) | |
| 767-917, gnl|rn3|chr7 (67786221-67786071) | |
| 767-917, gnl|xenTro1|scaffold_887 (156118-156268) | |
| 934-1347, gnl|bosTau2|chr5 (32746620-32747043) | |
| 934-1347, gnl|Mm7|chr10 (127314801-127315196) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-511, gnl|bosTau2|chr5 (32781870-32782338) | |
| 43-511, gnl|Hg17|chr12 (55637671-55637200) | |
| 366-477, gnl|bosTau2|chr3 (13486485-13486596) | |
| 366-477, gnl|Hg17|chr12 (55637345-55637234) | |
| 366-477, gnl|Mm7|chr10 (127325840-127325951) | |
| 764-933, gnl|bosTau2|chr5 (32745888-32746057) | |
| 764-933, gnl|Hg17|chr12 (55662212-55662038) | |
| 764-933, gnl|Mm7|chr10 (127314168-127314337) | |
| 767-917, gnl|bosTau2|chr5 (32718967-32719117) | |
| 767-917, gnl|canFam2|chr10 (4115671-4115821) | |
| 767-917, gnl|dasNov1|scaffold_2289 (84136-83986) | |
| 767-917, gnl|echTel1|scaffold_194817 (814-964) | |
| 767-917, gnl|hg17|chr12 (55662054-55662204) | |
| 767-917, gnl|Hg17|chr12 (55662204-55662054) | |
| 767-917, gnl|loxAfr1|scaffold_1651 (61878-62028) | |
| 767-917, gnl|mm7|chr10 (127266219-127266069) | |
| 767-917, gnl|Mm7|chr10 (127291574-127291724) | |
| 767-917, gnl|monDom2|scaffold_303 (18828-18978) | |
| 767-917, gnl|oryCun1|scaffold_179446 (7534-7384) | |
| 767-917, gnl|panTro1|chr10_random (22568258-22568108) | |
| 767-917, gnl|rheMac2|chr11 (54044742-54044893) | |
| 767-917, gnl|rn3|chr7 (67786221-67786071) | |
| 767-917, gnl|xenTro1|scaffold_887 (156118-156268) | |
| 934-1347, gnl|bosTau2|chr5 (32746620-32747043) | |
| 934-1347, gnl|Mm7|chr10 (127314801-127315196) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.458435) |