Ss1.1-Tes1-TES01G090002.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGCTTGTACGCCTGGTGCGGGAGCTACGGGACATCGAGACTGTGCTTGGAGTAGTGGT TCACCACCATGTCCCGTGGTTCCAGCGCTGGTTTTGACCGTCACATTACCATTTTTTCCC CCGAGGGCCGGCTGTACCAAGTAGAATATGCTTTTAAGGCAATTAACCAGGGTGGCCTTA CATCAGTAGCCGTCAGAGGGAAAGACTGTGCAGTAATTGTCACACAGAAGAAAGTACCTG ACAAATTACTGGATTCCAGCACAGTGACTCACTTATTCAAGATAACTGAAAACATCGGCT GTGTGATGACAGGAATGACAGCTGACAGCAGATCCCAGGTACAGAGGGCACGTTATGAGG CAGCTAATTGGAAATACAAGTATGGTTATGAGATTCCTGTGGACATGCTGTGTAAAAGGA TTGCTGATATTTCTCAGGTCTACACACAGAATGCTGAAATGAGGCCTCTTGGTTGTTGTA TGATTTTAATTGGCATAGATGAAGAACAAGGCCCTCAGGTGTATAAGTGTGATCCCGCAG GTTACTACTGTGGGTTTAAAGCCACTGCAGCAGGAGTTAAACAAACCGAGTCAACCAGCT TCCTTGAAAAAAAAGTGAAGAAGAAATTTGATTGGACATTTGAACAGACAGTGGAAACTG CAATTACATGCCTGTCTACTGTTCTATCAATTGATTTCAAGCCTTCAGAAATAGAAGTTG GAGTGGTTACAGTTGAAAATCCTAAATTCAGGATTCTTACAGAAGCAGAGATTGACGCTC ACCTTGTTGCTCTAGCAGAGAGAGACTAAACGTTGTAGCTAGTTTACCAAATCCATGACG CCACTTATCTGTGTGTTTGGTAACAACAGACCAACCTATGGAGGCCCCTGGATTGAAAAA GGAACCTTTCCCACTCCTCCTGCCACTGAAGTGGTTAGGACTCTGTATAAATAAACACAG TGCTTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGCTTGTACGCCTGGTGCGGGAGCTACGGGACATCGAGACTGTGCTTGGAGTAGTGGT TCACCACCATGTCCCGTGGTTCCAGCGCTGGTTTTGACCGTCACATTACCATTTTTTCCC CCGAGGGCCGGCTGTACCAAGTAGAATATGCTTTTAAGGCAATTAACCAGGGTGGCCTTA CATCAGTAGCCGTCAGAGGGAAAGACTGTGCAGTAATTGTCACACAGAAGAAAGTACCTG ACAAATTACTGGATTCCAGCACAGTGACTCACTTATTCAAGATAACTGAAAACATCGGCT GTGTGATGACAGGAATGACAGCTGACAGCAGATCCCAGGTACAGAGGGCACGTTATGAGG CAGCTAATTGGAAATACAAGTATGGTTATGAGATTCCTGTGGACATGCTGTGTAAAAGGA TTGCTGATATTTCTCAGGTCTACACACAGAATGCTGAAATGAGGCCTCTTGGTTGTTGTA TGATTTTAATTGGCATAGATGAAGAACAAGGCCCTCAGGTGTATAAGTGTGATCCCGCAG GTTACTACTGTGGGTTTAAAGCCACTGCAGCAGGAGTTAAACAAACCGAGTCAACCAGCT TCCTTGAAAAAAAAGTGAAGAAGAAATTTGATTGGACATTTGAACAGACAGTGGAAACTG CAATTACATGCCTGTCTACTGTTCTATCAATTGATTTCAAGCCTTCAGAAATAGAAGTTG GAGTGGTTACAGTTGAAAATCCTAAATTCAGGATTCTTACAGAAGCAGAGATTGACGCTC ACCTTGTTGCTCTAGCAGAGAGAGACTAAACGTTGTAGCTAGTTTACCAAATCCATGACG CCACTTATCTGTGTGTTTGGTAACAACAGACCAACCTATGGAGGCCCCTGGATTGAAAAA GGAACCTTTCCCACTCCTCCTGCCACTGAAGTGGTTAGGACTCTGTATAAATAAACACAG TGCTTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 3-119, + strand, RNAz p=0.950416 | |
| 3-117, + strand, RNAz p=0.999262 | |
| 828-946, - strand, RNAz p=0.829171 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-119, + strand, RNAz p=0.950416 | |
| 3-117, + strand, RNAz p=0.999262 | |
| 828-946, - strand, RNAz p=0.829171 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_002791, + |
| Aligned organism(s): 81 entry(ies) | More info |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
| 3-144, gnl|bosTau2|chr21 (30046384-30046522) | |
| 3-144, gnl|canFam2|chr16 (56966329-56966217) | |
| 3-144, gnl|danRer3|chr17 (6452204-6452292) | |
| 3-144, gnl|echTel1|scaffold_316036 (105872-105800) | |
| 3-144, gnl|fr1|chrUn (199642877-199642960) | |
| 3-144, gnl|galGal2|chr5 (33033081-33033164) | |
| 3-144, gnl|Hg17|chr14 (34831367-34831509) | |
| 3-144, gnl|hg17|chrX (12603588-12603701) | |
| 3-144, gnl|loxAfr1|scaffold_188542 (185-289) | |
| 3-144, gnl|mm7|chr10 (71402089-71401986) | |
| 3-144, gnl|Mm7|chr12 (53324889-53325026) | |
| 3-144, gnl|oryCun1|scaffold_166346 (5760-5872) | |
| 3-144, gnl|panTro1|chrX (13015924-13016037) | |
| 3-144, gnl|rheMac2|chrX (10534164-10534274) | |
| 3-144, gnl|rn3|chr12 (331280-331177) | |
| 3-144, gnl|tetNig1|chr14 (8649050-8648977) | |
| 478-656, gnl|bosTau2|chr21 (30066469-30066647) | |
| 478-656, gnl|canFam2|chr16 (56965891-56965714) | |
| 478-656, gnl|canFam2|chr16 (56965891-56965715) | |
| 478-656, gnl|canFam2|chr16 (56965891-56965755) | |
| 478-656, gnl|canFam2|chr8 (17038260-17038440) | |
| 478-656, gnl|danRer3|chr17 (6460005-6460185) | |
| 478-656, gnl|danRer3|chr17 (6460005-6460182) | |
| 478-656, gnl|danRer3|chr17 (6460005-6460181) | |
| 478-656, gnl|danRer3|chr17 (6460005-6460140) | |
| 478-656, gnl|echTel1|scaffold_29434 (4944-5119) | |
| 478-656, gnl|echTel1|scaffold_29434 (4944-5118) | |
| 478-656, gnl|echTel1|scaffold_29434 (4944-5084) | |
| 478-656, gnl|echTel1|scaffold_316036 (93722-93542) | |
| 478-656, gnl|fr1|chrUn (199644410-199644590) | |
| 478-656, gnl|fr1|chrUn (199644410-199644587) | |
| 478-656, gnl|fr1|chrUn (199644410-199644580) | |
| 478-656, gnl|fr1|chrUn (199644410-199644546) | |
| 478-656, gnl|galGal2|chr5 (33039321-33039501) | |
| 478-656, gnl|galGal2|chr5 (33039324-33039497) | |
| 478-656, gnl|galGal2|chr5 (33039338-33039494) | |
| 478-656, gnl|galGal2|chr5 (33039321-33039457) | |
| 478-656, gnl|hg17|chr13 (96926398-96926566) | |
| 478-656, gnl|hg17|chr14 (34851839-34852019) | |
| 478-656, gnl|Hg17|chr14 (34851838-34852016) | |
| 478-656, gnl|hg17|chrX (12604002-12604143) | |
| 478-656, gnl|hg17|chrY (13837059-13837236) | |
| 478-656, gnl|loxAfr1|scaffold_188542 (605-765) | |
| 478-656, gnl|loxAfr1|scaffold_188542 (605-764) | |
| 478-656, gnl|loxAfr1|scaffold_188542 (605-707) | |
| 478-656, gnl|loxAfr1|scaffold_63330 (478-658) | |
| 478-656, gnl|mm7|chr10 (71401652-71401475) | |
| 478-656, gnl|mm7|chr10 (71401652-71401476) | |
| 478-656, gnl|mm7|chr10 (71401652-71401512) | |
| 478-656, gnl|mm7|chr12 (53338223-53338403) | |
| 478-656, gnl|Mm7|chr12 (53338222-53338400) | |
| 478-656, gnl|monDom2|scaffold_27 (20220657-20220520) | |
| 478-656, gnl|monDom2|scaffold_73 (3004365-3004185) | |
| 478-656, gnl|monDom2|scaffold_73 (3004362-3004188) | |
| 478-656, gnl|monDom2|scaffold_73 (3004348-3004192) | |
| 478-656, gnl|oryCun1|scaffold_166346 (7434-7596) | |
| 478-656, gnl|oryCun1|scaffold_166346 (7434-7600) | |
| 478-656, gnl|oryCun1|scaffold_166346 (7434-7599) | |
| 478-656, gnl|oryCun1|scaffold_166346 (7434-7545) | |
| 478-656, gnl|panTro1|chr14 (80139635-80139803) | |
| 478-656, gnl|panTro1|chr15 (34013897-34014077) | |
| 478-656, gnl|panTro1|chrX (13016341-13016481) | |
| 478-656, gnl|panTro1|chrY (14427179-14427356) | |
| 478-656, gnl|rheMac2|chr17 (77894574-77894742) | |
| 478-656, gnl|rheMac2|chr7 (98269833-98270013) | |
| 478-656, gnl|rheMac2|chr7 (157089165-157089342) | |
| 478-656, gnl|rheMac2|chrX (10534590-10534717) | |
| 478-656, gnl|rn3|chr12 (330844-330665) | |
| 478-656, gnl|rn3|chr12 (330844-330666) | |
| 478-656, gnl|rn3|chr12 (330844-330702) | |
| 478-656, gnl|rn3|chr6 (75665469-75665649) | |
| 478-656, gnl|tetNig1|chr14 (8647629-8647449) | |
| 478-656, gnl|tetNig1|chr14 (8647629-8647453) | |
| 478-656, gnl|tetNig1|chr14 (8647629-8647456) | |
| 478-656, gnl|tetNig1|chr14 (8647629-8647493) | |
| 478-656, gnl|xenTro1|scaffold_117 (760611-760431) | |
| 478-656, gnl|xenTro1|scaffold_117 (760608-760434) | |
| 478-656, gnl|xenTro1|scaffold_117 (760594-760443) | |
| 749-976, gnl|bosTau2|chr21 (30069586-30069818) | |
| 749-976, gnl|Hg17|chr14 (34856203-34856431) | |
| 749-976, gnl|Mm7|chr12 (53344269-53344494) |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-144, gnl|bosTau2|chr21 (30046384-30046522) | |
| 3-144, gnl|canFam2|chr16 (56966329-56966217) | |
| 3-144, gnl|danRer3|chr17 (6452204-6452292) | |
| 3-144, gnl|echTel1|scaffold_316036 (105872-105800) | |
| 3-144, gnl|fr1|chrUn (199642877-199642960) | |
| 3-144, gnl|galGal2|chr5 (33033081-33033164) | |
| 3-144, gnl|Hg17|chr14 (34831367-34831509) | |
| 3-144, gnl|hg17|chrX (12603588-12603701) | |
| 3-144, gnl|loxAfr1|scaffold_188542 (185-289) | |
| 3-144, gnl|mm7|chr10 (71402089-71401986) | |
| 3-144, gnl|Mm7|chr12 (53324889-53325026) | |
| 3-144, gnl|oryCun1|scaffold_166346 (5760-5872) | |
| 3-144, gnl|panTro1|chrX (13015924-13016037) | |
| 3-144, gnl|rheMac2|chrX (10534164-10534274) | |
| 3-144, gnl|rn3|chr12 (331280-331177) | |
| 3-144, gnl|tetNig1|chr14 (8649050-8648977) | |
| 478-656, gnl|bosTau2|chr21 (30066469-30066647) | |
| 478-656, gnl|canFam2|chr16 (56965891-56965714) | |
| 478-656, gnl|canFam2|chr16 (56965891-56965715) | |
| 478-656, gnl|canFam2|chr16 (56965891-56965755) | |
| 478-656, gnl|canFam2|chr8 (17038260-17038440) | |
| 478-656, gnl|danRer3|chr17 (6460005-6460185) | |
| 478-656, gnl|danRer3|chr17 (6460005-6460182) | |
| 478-656, gnl|danRer3|chr17 (6460005-6460181) | |
| 478-656, gnl|danRer3|chr17 (6460005-6460140) | |
| 478-656, gnl|echTel1|scaffold_29434 (4944-5119) | |
| 478-656, gnl|echTel1|scaffold_29434 (4944-5118) | |
| 478-656, gnl|echTel1|scaffold_29434 (4944-5084) | |
| 478-656, gnl|echTel1|scaffold_316036 (93722-93542) | |
| 478-656, gnl|fr1|chrUn (199644410-199644590) | |
| 478-656, gnl|fr1|chrUn (199644410-199644587) | |
| 478-656, gnl|fr1|chrUn (199644410-199644580) | |
| 478-656, gnl|fr1|chrUn (199644410-199644546) | |
| 478-656, gnl|galGal2|chr5 (33039321-33039501) | |
| 478-656, gnl|galGal2|chr5 (33039324-33039497) | |
| 478-656, gnl|galGal2|chr5 (33039338-33039494) | |
| 478-656, gnl|galGal2|chr5 (33039321-33039457) | |
| 478-656, gnl|hg17|chr13 (96926398-96926566) | |
| 478-656, gnl|hg17|chr14 (34851839-34852019) | |
| 478-656, gnl|Hg17|chr14 (34851838-34852016) | |
| 478-656, gnl|hg17|chrX (12604002-12604143) | |
| 478-656, gnl|hg17|chrY (13837059-13837236) | |
| 478-656, gnl|loxAfr1|scaffold_188542 (605-765) | |
| 478-656, gnl|loxAfr1|scaffold_188542 (605-764) | |
| 478-656, gnl|loxAfr1|scaffold_188542 (605-707) | |
| 478-656, gnl|loxAfr1|scaffold_63330 (478-658) | |
| 478-656, gnl|mm7|chr10 (71401652-71401475) | |
| 478-656, gnl|mm7|chr10 (71401652-71401476) | |
| 478-656, gnl|mm7|chr10 (71401652-71401512) | |
| 478-656, gnl|mm7|chr12 (53338223-53338403) | |
| 478-656, gnl|Mm7|chr12 (53338222-53338400) | |
| 478-656, gnl|monDom2|scaffold_27 (20220657-20220520) | |
| 478-656, gnl|monDom2|scaffold_73 (3004365-3004185) | |
| 478-656, gnl|monDom2|scaffold_73 (3004362-3004188) | |
| 478-656, gnl|monDom2|scaffold_73 (3004348-3004192) | |
| 478-656, gnl|oryCun1|scaffold_166346 (7434-7596) | |
| 478-656, gnl|oryCun1|scaffold_166346 (7434-7600) | |
| 478-656, gnl|oryCun1|scaffold_166346 (7434-7599) | |
| 478-656, gnl|oryCun1|scaffold_166346 (7434-7545) | |
| 478-656, gnl|panTro1|chr14 (80139635-80139803) | |
| 478-656, gnl|panTro1|chr15 (34013897-34014077) | |
| 478-656, gnl|panTro1|chrX (13016341-13016481) | |
| 478-656, gnl|panTro1|chrY (14427179-14427356) | |
| 478-656, gnl|rheMac2|chr17 (77894574-77894742) | |
| 478-656, gnl|rheMac2|chr7 (98269833-98270013) | |
| 478-656, gnl|rheMac2|chr7 (157089165-157089342) | |
| 478-656, gnl|rheMac2|chrX (10534590-10534717) | |
| 478-656, gnl|rn3|chr12 (330844-330665) | |
| 478-656, gnl|rn3|chr12 (330844-330666) | |
| 478-656, gnl|rn3|chr12 (330844-330702) | |
| 478-656, gnl|rn3|chr6 (75665469-75665649) | |
| 478-656, gnl|tetNig1|chr14 (8647629-8647449) | |
| 478-656, gnl|tetNig1|chr14 (8647629-8647453) | |
| 478-656, gnl|tetNig1|chr14 (8647629-8647456) | |
| 478-656, gnl|tetNig1|chr14 (8647629-8647493) | |
| 478-656, gnl|xenTro1|scaffold_117 (760611-760431) | |
| 478-656, gnl|xenTro1|scaffold_117 (760608-760434) | |
| 478-656, gnl|xenTro1|scaffold_117 (760594-760443) | |
| 749-976, gnl|bosTau2|chr21 (30069586-30069818) | |
| 749-976, gnl|Hg17|chr14 (34856203-34856431) | |
| 749-976, gnl|Mm7|chr12 (53344269-53344494) |
| Expressed library(ies): 47 entry(ies) | More info |
| Expressed library(ies): 47 entry(ies) | Help | Less info |
| clu (1.91433) | |
| col (0.780031) | |
| ill (0.702371) | |
| tes (0.623441) | |
| cte (0.58548) | |
| nlu (0.575043) | |
| fbs (0.526039) | |
| jej (0.494609) | |
| eje (0.494169) | |
| spl (0.429553) | |
| pty (0.428143) | |
| lnt (0.426925) | |
| csk (0.422238) | |
| ldo (0.38801) | |
| fty (0.351679) | |
| sin (0.349895) | |
| rec (0.346141) | |
| vin (0.332557) | |
| fco (0.314416) | |
| cag (0.302389) | |
| bla (0.248694) | |
| cly (0.241284) | |
| pgl (0.236967) | |
| mas (0.210305) | |
| nep (0.183925) | |
| sag (0.182715) | |
| gul (0.177588) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) | |
| spc (0.113366) | |
| nbm (0.0993246) |
| Expressed library(ies): 47 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (1.91433) | |
| col (0.780031) | |
| ill (0.702371) | |
| tes (0.623441) | |
| cte (0.58548) | |
| nlu (0.575043) | |
| fbs (0.526039) | |
| jej (0.494609) | |
| eje (0.494169) | |
| spl (0.429553) | |
| pty (0.428143) | |
| lnt (0.426925) | |
| csk (0.422238) | |
| ldo (0.38801) | |
| fty (0.351679) | |
| sin (0.349895) | |
| rec (0.346141) | |
| vin (0.332557) | |
| fco (0.314416) | |
| cag (0.302389) | |
| bla (0.248694) | |
| cly (0.241284) | |
| pgl (0.236967) | |
| mas (0.210305) | |
| nep (0.183925) | |
| sag (0.182715) | |
| gul (0.177588) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) | |
| spc (0.113366) | |
| nbm (0.0993246) |