Non-Coding RNA Search

Ss1.1-Tes1-TES01G100004.5

Sequence:


               
               GGGCAGAAGCAGGGCTTAGTCCCCTGGGAATCACAGCCCTGCTACCAGACACACTGAATC
CTAGCTCTGGTCTACCTGGCTTCTCTGTTACCAAATTGCTCCTTGCCTGGCTGCACCTTC
TGCCCTAGACTCACACCACCCTCCACTCTCCACGCCAGAGCACATACACCACACCAGCCA
TGTCTTCCAACACTCGAGTGGCTCTGGTGACTGGGGCAAACAAGGGTATTGGCTTCGCCA
TCGTGCGGGACCTGTGCCGGCAGTTCGCTGGGGACGTGGTGCTCACAGCGAGGGACGTGG
CACGAGGCCAGGCAGCCGTGAAGCAACTGCAAGCCGAGGGCCTGAGCCCGCGCTTCCACC
AGCTGGACATCATAGACCTGCAGAGCATCCGTGCCCTGTGTGACTTCCTGCGGAAGGAGT
ATGGTGGGCTGGATGTGCTGGTCAACAACGCGGCCATCGCCTTCCAGTTGGACAATCCCA
CACCGTTTCATATTCAGGCAGAACTGACTATGAAAACAAACTTCATGGGAACCCGAAATG
TGTGCACAGAGCTTCTGCCTCTAATAAAACCTCAAGGCAGAGTGGTGAATGTGTCTAGCA
CTGAAGGTGTCAGAGCCCTTAACGAGTGCAGCCCTGAATTGCAGCAGAAGTTCAAGAGTG
AGACCATCACAGAGGAGGAGCTGGTGGGGCTCATGAACAAGTTTGTGGAAGACACAAAGA
ACGGGGTGCACAGGAAGGAGGGATGGAGTGATTCGACCTACGGAGTGACAAAAATTGGGG
TCTCTGTGTTGTCCAGGATCTATGCCAGGAAACTGAGAGAGCAGAGAGCAGGGGACAAGA
TCCTCCTGAATGCCTGCTGCCCAGGGTGGGTGAGAACTGACATGGGGGGACCCAAAGCCC
CCAAGAGCCCAGAGGTAGGAGCAGAGACCCCCGTGTACTTGGCCCTTTTGCCCTCAGATG
CAGAGGGGCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCAGAAGCAGGGCTTAGTCCCCTGGGAATCACAGCCCTGCTACCAGACACACTGAATC
CTAGCTCTGGTCTACCTGGCTTCTCTGTTACCAAATTGCTCCTTGCCTGGCTGCACCTTC
TGCCCTAGACTCACACCACCCTCCACTCTCCACGCCAGAGCACATACACCACACCAGCCA
TGTCTTCCAACACTCGAGTGGCTCTGGTGACTGGGGCAAACAAGGGTATTGGCTTCGCCA
TCGTGCGGGACCTGTGCCGGCAGTTCGCTGGGGACGTGGTGCTCACAGCGAGGGACGTGG
CACGAGGCCAGGCAGCCGTGAAGCAACTGCAAGCCGAGGGCCTGAGCCCGCGCTTCCACC
AGCTGGACATCATAGACCTGCAGAGCATCCGTGCCCTGTGTGACTTCCTGCGGAAGGAGT
ATGGTGGGCTGGATGTGCTGGTCAACAACGCGGCCATCGCCTTCCAGTTGGACAATCCCA
CACCGTTTCATATTCAGGCAGAACTGACTATGAAAACAAACTTCATGGGAACCCGAAATG
TGTGCACAGAGCTTCTGCCTCTAATAAAACCTCAAGGCAGAGTGGTGAATGTGTCTAGCA
CTGAAGGTGTCAGAGCCCTTAACGAGTGCAGCCCTGAATTGCAGCAGAAGTTCAAGAGTG
AGACCATCACAGAGGAGGAGCTGGTGGGGCTCATGAACAAGTTTGTGGAAGACACAAAGA
ACGGGGTGCACAGGAAGGAGGGATGGAGTGATTCGACCTACGGAGTGACAAAAATTGGGG
TCTCTGTGTTGTCCAGGATCTATGCCAGGAAACTGAGAGAGCAGAGAGCAGGGGACAAGA
TCCTCCTGAATGCCTGCTGCCCAGGGTGGGTGAGAACTGACATGGGGGGACCCAAAGCCC
CCAAGAGCCCAGAGGTAGGAGCAGAGACCCCCGTGTACTTGGCCCTTTTGCCCTCAGATG
CAGAGGGGCCTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|47522960|ref|NP_999238.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|47522960|ref|NP_999238.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               614-733, + strand, RNAz p=0.850318

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               614-733, + strand, RNAz p=0.850318

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               170-467, gnl|bosTau2|chr1 (96144792-96145089)
               

               
               170-467, gnl|Hg17|chr21 (36364268-36364571)
               

               
               170-467, gnl|Mm7|chr16 (93667448-93667746)
               


               
               575-972, gnl|bosTau2|chr1 (96160732-96161129)
               

               
               575-972, gnl|Hg17|chr21 (36440242-36440639)
               

               
               575-972, gnl|Mm7|chr16 (93689135-93689532)
               


               
               725-934, gnl|bosTau2|chr11 (21412909-21412700)
               

               
               725-934, gnl|Hg17|chr21 (36440392-36440652)
               

               
               725-934, gnl|Mm7|chr16 (93750655-93750915)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               170-467, gnl|bosTau2|chr1 (96144792-96145089)
               

               
               170-467, gnl|Hg17|chr21 (36364268-36364571)
               

               
               170-467, gnl|Mm7|chr16 (93667448-93667746)
               


               
               575-972, gnl|bosTau2|chr1 (96160732-96161129)
               

               
               575-972, gnl|Hg17|chr21 (36440242-36440639)
               

               
               575-972, gnl|Mm7|chr16 (93689135-93689532)
               


               
               725-934, gnl|bosTau2|chr11 (21412909-21412700)
               

               
               725-934, gnl|Hg17|chr21 (36440392-36440652)
               

               
               725-934, gnl|Mm7|chr16 (93750655-93750915)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ute (0.796707)
               

               
               pty (0.142714)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.796707)
               

               
               pty (0.142714)

	170-467, gnl\|bosTau2\|chr1 (96144792-96145089)
	170-467, gnl\|Hg17\|chr21 (36364268-36364571)
	170-467, gnl\|Mm7\|chr16 (93667448-93667746)

	575-972, gnl\|bosTau2\|chr1 (96160732-96161129)
	575-972, gnl\|Hg17\|chr21 (36440242-36440639)
	575-972, gnl\|Mm7\|chr16 (93689135-93689532)

	725-934, gnl\|bosTau2\|chr11 (21412909-21412700)
	725-934, gnl\|Hg17\|chr21 (36440392-36440652)
	725-934, gnl\|Mm7\|chr16 (93750655-93750915)