Ss1.1-Tes1-TES01G110019.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGCTCCCGAGAGCCAGGAGGCGGAGGGCATTGTTTATTATTTTATATTTTGGAAGATT TGTGCAGGCTTGAGCGACACACTCTGGCAGACGGTCGCGGCTTCCGTGCAGTCGTGGCTC GCCTTCGCACCGAGGGTCCCCAAGTTCAGGAGTCATGTGGCTGGAAATACTCCTCGCCTC TGTGCTGGGCTTTGTCATCTACTGGTTCGTCTCCAAGGACAAGGAGGAGACCTTGCTCCT TGGAGATGGCTGGTGGGGGCCCGGATCAAGGCCCGCGGCTGCGGAGGACGAGAGCATCCG GCCATTCAAGGTGGAGACGTCAGACGAGGAGATCAACGACTTACACCAGAGGATCGAGAA GTTTCGCTTAACCCCGCCTTTGGAGGACAGCCGCTTCCACTACGGGTTCAACTCCAACTA TCTGAAGAAAATCATCTCCTACTGGCGGAACACATTCGACTGGAGGAAGCAGGTGGAGGT TCTCAACAAGTACCCTCACTTCAAGACCAAGATTGAAGGGCTGGACATCCACTTCATCCA CGTGAAGCCCCCCCAGCTGCCCTCCGGCCGCACCGCGAAGCCCTTGCTGATGGTGCACGG CTGGCCTGGCTGCTTCTACGAGTTTTATAAGATCATCCCGCTCCTGACGGACCCCAAGAA CCACGGCCTGAGCGATGAGCATGTGTTCGAAGTCATCTGTCCATCCATTCCTGGCTACGG CTTCTCAGAGGCATCCTCTAAGAAAGGCTTCAACTCAGTGGCCACTGCCAGGATCTTTTA CAAGCTGATGCTGCGGCTGGGCTTCCAGGAATTCTACCTTCAAGGCGGAGACTGGGGGGC CCTGATCTGCACCAACATGGCCCAGCTGGTGCCCAGCCACGTGAAAGGCCTGCACTTGAA CGTAGCCCTGGTTTTAAGAAATGTCTACACCCTGACCTTTTTCCTGGGACGGCGTTTGGG GAGGCTTTTTGGCTACACTGAGAGGGACCTCGAGCTGCTTTACCCCTTCAAGAAGACCTT CTACACCTTGATGAGGGAGAGCGGCTACATGCACATCCAGAGCACCAAGCCGGACACCGT GGGCTGCGCCCTGAATGACTCCCCCGTGGGCCTGGCTGCCTACATCCTAGAGAAGTTTTC TACCTGGACCAACGAAGAGTTCCGGGACCTGGAGGATGGCGGCCTGGAGAGGAAGTTCTC CCTGGATGAGCTGCTGACAGTCATCATGCTCTACTGGACAACGGGCACCATCACCTCCTC CCAGCGCTTCTACAAGGAGAACCTAGGACAGGGCGTGATGGCCAATAAGCATGAGGCGAT CAAGGTCCACGTGCCCACCGGCTTTGCTGCCTTCCCTTCCGAGGTGTTACACTGCCCAGA AAAGTGGGTGAAGAACAAGTACCCAAAACTCATCTCCTATTCCTACATGGCCCGTGGGGG CCACTTTGCCGCCTTTGAGGAGCCGGAGCTGCTGGCCCAGGACATCCGCAAGTTCATGGG GCTGTTGGAGCAGCAGTGACCACAGCGGGTGGGGGGACTGGCTGTCACCTCATAGGCATC CCCTGCTCCCAAGTGGTAGGCTCCCTCCCGATCCCTGTCCTTTTCCCCGGAAGCTCCCGG CAGAAGTGGGGCTGGCAGGGTGGTGGCTTCCCAGGCTTCTGTGGAGACGCCCCATTTTCC TAGGAACACACTGGCTTCCGTCCCTGCCAGCTGGGACCCCAGGCCTGCCCCTCAGCATAT GCTCCCCACACACTTGTTAAGCAACATGACTTTGATGATAAATGATTTTCCTTCTCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGCTCCCGAGAGCCAGGAGGCGGAGGGCATTGTTTATTATTTTATATTTTGGAAGATT TGTGCAGGCTTGAGCGACACACTCTGGCAGACGGTCGCGGCTTCCGTGCAGTCGTGGCTC GCCTTCGCACCGAGGGTCCCCAAGTTCAGGAGTCATGTGGCTGGAAATACTCCTCGCCTC TGTGCTGGGCTTTGTCATCTACTGGTTCGTCTCCAAGGACAAGGAGGAGACCTTGCTCCT TGGAGATGGCTGGTGGGGGCCCGGATCAAGGCCCGCGGCTGCGGAGGACGAGAGCATCCG GCCATTCAAGGTGGAGACGTCAGACGAGGAGATCAACGACTTACACCAGAGGATCGAGAA GTTTCGCTTAACCCCGCCTTTGGAGGACAGCCGCTTCCACTACGGGTTCAACTCCAACTA TCTGAAGAAAATCATCTCCTACTGGCGGAACACATTCGACTGGAGGAAGCAGGTGGAGGT TCTCAACAAGTACCCTCACTTCAAGACCAAGATTGAAGGGCTGGACATCCACTTCATCCA CGTGAAGCCCCCCCAGCTGCCCTCCGGCCGCACCGCGAAGCCCTTGCTGATGGTGCACGG CTGGCCTGGCTGCTTCTACGAGTTTTATAAGATCATCCCGCTCCTGACGGACCCCAAGAA CCACGGCCTGAGCGATGAGCATGTGTTCGAAGTCATCTGTCCATCCATTCCTGGCTACGG CTTCTCAGAGGCATCCTCTAAGAAAGGCTTCAACTCAGTGGCCACTGCCAGGATCTTTTA CAAGCTGATGCTGCGGCTGGGCTTCCAGGAATTCTACCTTCAAGGCGGAGACTGGGGGGC CCTGATCTGCACCAACATGGCCCAGCTGGTGCCCAGCCACGTGAAAGGCCTGCACTTGAA CGTAGCCCTGGTTTTAAGAAATGTCTACACCCTGACCTTTTTCCTGGGACGGCGTTTGGG GAGGCTTTTTGGCTACACTGAGAGGGACCTCGAGCTGCTTTACCCCTTCAAGAAGACCTT CTACACCTTGATGAGGGAGAGCGGCTACATGCACATCCAGAGCACCAAGCCGGACACCGT GGGCTGCGCCCTGAATGACTCCCCCGTGGGCCTGGCTGCCTACATCCTAGAGAAGTTTTC TACCTGGACCAACGAAGAGTTCCGGGACCTGGAGGATGGCGGCCTGGAGAGGAAGTTCTC CCTGGATGAGCTGCTGACAGTCATCATGCTCTACTGGACAACGGGCACCATCACCTCCTC CCAGCGCTTCTACAAGGAGAACCTAGGACAGGGCGTGATGGCCAATAAGCATGAGGCGAT CAAGGTCCACGTGCCCACCGGCTTTGCTGCCTTCCCTTCCGAGGTGTTACACTGCCCAGA AAAGTGGGTGAAGAACAAGTACCCAAAACTCATCTCCTATTCCTACATGGCCCGTGGGGG CCACTTTGCCGCCTTTGAGGAGCCGGAGCTGCTGGCCCAGGACATCCGCAAGTTCATGGG GCTGTTGGAGCAGCAGTGACCACAGCGGGTGGGGGGACTGGCTGTCACCTCATAGGCATC CCCTGCTCCCAAGTGGTAGGCTCCCTCCCGATCCCTGTCCTTTTCCCCGGAAGCTCCCGG CAGAAGTGGGGCTGGCAGGGTGGTGGCTTCCCAGGCTTCTGTGGAGACGCCCCATTTTCC TAGGAACACACTGGCTTCCGTCCCTGCCAGCTGGGACCCCAGGCCTGCCCCTCAGCATAT GCTCCCCACACACTTGTTAAGCAACATGACTTTGATGATAAATGATTTTCCTTCTCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 147-1726, + strand, RNAz p=0.922085 | |
| 1190-1290, - strand, RNAz p=0.644591 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 147-1726, + strand, RNAz p=0.922085 | |
| 1190-1290, - strand, RNAz p=0.644591 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_000120, + |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 147-336, gnl|bosTau2|chr16 (17207784-17207973) | |
| 147-336, gnl|Hg17|chr1 (222323158-222323347) | |
| 147-336, gnl|Mm7|chr1 (180981638-180981449) | |
| 517-747, gnl|bosTau2|chr16 (17216544-17216774) | |
| 517-747, gnl|canFam2|chr7 (41942526-41942268) | |
| 517-747, gnl|danRer3|chr20 (30267342-30267103) | |
| 517-747, gnl|dasNov1|scaffold_58930 (3394-3152) | |
| 517-747, gnl|echTel1|scaffold_265963 (3824-4068) | |
| 517-747, gnl|fr1|chrUn (117780524-117780310) | |
| 517-747, gnl|galGal2|chr3 (13579826-13579588) | |
| 517-747, gnl|hg17|chr1 (222333078-222333326) | |
| 517-747, gnl|Hg17|chr1 (222333088-222333318) | |
| 517-747, gnl|mm7|chr1 (180975837-180975591) | |
| 517-747, gnl|Mm7|chr1 (180975827-180975597) | |
| 517-747, gnl|monDom2|scaffold_13 (33409501-33409751) | |
| 517-747, gnl|oryCun1|scaffold_212702 (5660-5907) | |
| 517-747, gnl|panTro1|chr1 (206147425-206147673) | |
| 517-747, gnl|rheMac2|chr1 (144557972-144557725) | |
| 517-747, gnl|rn3|chr13 (96918233-96917982) | |
| 517-747, gnl|tetNig1|chrUn_random (144759234-144759450) | |
| 517-747, gnl|xenTro1|scaffold_215 (1610025-1609779) | |
| 872-1083, gnl|bosTau2|chr16 (17217925-17218136) | |
| 872-1083, gnl|Hg17|chr1 (222334260-222334474) | |
| 872-1083, gnl|Mm7|chr1 (180973741-180973527) | |
| 1190-1290, gnl|bosTau2|chr16 (17224568-17224668) | |
| 1190-1290, gnl|canFam2|chr7 (41936452-41936345) | |
| 1190-1290, gnl|danRer3|chr20 (30264950-30264855) | |
| 1190-1290, gnl|echTel1|scaffold_258991 (8859-8750) | |
| 1190-1290, gnl|fr1|chrUn (117779340-117779240) | |
| 1190-1290, gnl|galGal2|chr3 (13574482-13574378) | |
| 1190-1290, gnl|hg17|chr1 (222338921-222339028) | |
| 1190-1290, gnl|Hg17|chr1 (222338932-222339032) | |
| 1190-1290, gnl|loxAfr1|scaffold_40641 (8524-8418) | |
| 1190-1290, gnl|mm7|chr1 (180970179-180970075) | |
| 1190-1290, gnl|Mm7|chr1 (180970169-180970069) | |
| 1190-1290, gnl|monDom2|scaffold_13 (33418491-33418598) | |
| 1190-1290, gnl|panTro1|chr1 (206153359-206153465) | |
| 1190-1290, gnl|rheMac2|chr1 (144552162-144552055) | |
| 1190-1290, gnl|rn3|chr13 (96912892-96912788) | |
| 1190-1290, gnl|tetNig1|chr17 (2837535-2837436) | |
| 1190-1290, gnl|xenTro1|scaffold_215 (1606535-1606429) | |
| 1322-1795, gnl|bosTau2|chr16 (17225305-17225801) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 147-336, gnl|bosTau2|chr16 (17207784-17207973) | |
| 147-336, gnl|Hg17|chr1 (222323158-222323347) | |
| 147-336, gnl|Mm7|chr1 (180981638-180981449) | |
| 517-747, gnl|bosTau2|chr16 (17216544-17216774) | |
| 517-747, gnl|canFam2|chr7 (41942526-41942268) | |
| 517-747, gnl|danRer3|chr20 (30267342-30267103) | |
| 517-747, gnl|dasNov1|scaffold_58930 (3394-3152) | |
| 517-747, gnl|echTel1|scaffold_265963 (3824-4068) | |
| 517-747, gnl|fr1|chrUn (117780524-117780310) | |
| 517-747, gnl|galGal2|chr3 (13579826-13579588) | |
| 517-747, gnl|hg17|chr1 (222333078-222333326) | |
| 517-747, gnl|Hg17|chr1 (222333088-222333318) | |
| 517-747, gnl|mm7|chr1 (180975837-180975591) | |
| 517-747, gnl|Mm7|chr1 (180975827-180975597) | |
| 517-747, gnl|monDom2|scaffold_13 (33409501-33409751) | |
| 517-747, gnl|oryCun1|scaffold_212702 (5660-5907) | |
| 517-747, gnl|panTro1|chr1 (206147425-206147673) | |
| 517-747, gnl|rheMac2|chr1 (144557972-144557725) | |
| 517-747, gnl|rn3|chr13 (96918233-96917982) | |
| 517-747, gnl|tetNig1|chrUn_random (144759234-144759450) | |
| 517-747, gnl|xenTro1|scaffold_215 (1610025-1609779) | |
| 872-1083, gnl|bosTau2|chr16 (17217925-17218136) | |
| 872-1083, gnl|Hg17|chr1 (222334260-222334474) | |
| 872-1083, gnl|Mm7|chr1 (180973741-180973527) | |
| 1190-1290, gnl|bosTau2|chr16 (17224568-17224668) | |
| 1190-1290, gnl|canFam2|chr7 (41936452-41936345) | |
| 1190-1290, gnl|danRer3|chr20 (30264950-30264855) | |
| 1190-1290, gnl|echTel1|scaffold_258991 (8859-8750) | |
| 1190-1290, gnl|fr1|chrUn (117779340-117779240) | |
| 1190-1290, gnl|galGal2|chr3 (13574482-13574378) | |
| 1190-1290, gnl|hg17|chr1 (222338921-222339028) | |
| 1190-1290, gnl|Hg17|chr1 (222338932-222339032) | |
| 1190-1290, gnl|loxAfr1|scaffold_40641 (8524-8418) | |
| 1190-1290, gnl|mm7|chr1 (180970179-180970075) | |
| 1190-1290, gnl|Mm7|chr1 (180970169-180970069) | |
| 1190-1290, gnl|monDom2|scaffold_13 (33418491-33418598) | |
| 1190-1290, gnl|panTro1|chr1 (206153359-206153465) | |
| 1190-1290, gnl|rheMac2|chr1 (144552162-144552055) | |
| 1190-1290, gnl|rn3|chr13 (96912892-96912788) | |
| 1190-1290, gnl|tetNig1|chr17 (2837535-2837436) | |
| 1190-1290, gnl|xenTro1|scaffold_215 (1606535-1606429) | |
| 1322-1795, gnl|bosTau2|chr16 (17225305-17225801) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| cli (1.68093) | |
| cov (0.925069) | |
| fhi (0.508733) | |
| nmm (0.398406) | |
| fbs (0.350693) | |
| pty (0.285429) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| ese (0.253004) | |
| mas (0.210305) | |
| fli (0.202881) | |
| jej (0.197844) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| sin (0.174948) | |
| csp (0.161186) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| cly (0.120642) | |
| cty (0.10408) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (1.68093) | |
| cov (0.925069) | |
| fhi (0.508733) | |
| nmm (0.398406) | |
| fbs (0.350693) | |
| pty (0.285429) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| ese (0.253004) | |
| mas (0.210305) | |
| fli (0.202881) | |
| jej (0.197844) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| sin (0.174948) | |
| csp (0.161186) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| cly (0.120642) | |
| cty (0.10408) |