Ss1.1-Tes1-TES01G110044.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGTGCCGGAAGGATGGCCGCTCAACGAGTATTCCCACTTTCCTGTGTGGTGCAGCAGT ATGCCTGGGGGAAGATGGGTTCCAACAGTGAAGTGGCTAGGCTGCTGGCTAGCAGTGATG CACTGGCTCAGATCTCAGAGGACAAGCCATATGCAGAGCTGTGGATGGGGACCCACCCCA GGGGAGATTCCAAGATCCTTGACAACCGCATCTCACAGAAGACCCTAGGCCAGTGGATTG CTGAGAACCAGGAGTGCTTGGGTTCGAAGGTCAAGGACACCTTCAGTGGCAAGCTGCCCT TCCTCTTCAAAGTGCTGTCAGTTGAAACGGCCTTGTCCATCCAGGCACACCCTAACAAGG AGCTGGCAGAGAAGCTGCACCTGCAGGCTCCACAGCACTACCCTGATGCCAACCATAAGC CAGAGATAGCCATTGCCCTCACCTCCTTCCAGGGCTTATGTGGCTTCCGGCCAGTTGAAG AGATTGTGACCTTTCTGACGAAGGTGCCCGAGTTCCAGTTTCTAATTGGAGACAGTGCAG CAACACAGCTGAAGCAGAGCATAAGCCATGACTCCCAGGCTGTGGCCTCTGCTCTGCGGA GCTGTTTCTCCCATCTGATGAATAGCGAAAAGAAGGTAGTGGTGGAGCAGCTCAACCTGT TGGTGAAGCGGATCTCCCAACAAGTGGCTGCTGGAAACAACATGGAAGACATCTGTGGGG AGCTCTTGCTGCAGCTGCACCAGCAGTACCCAGGTGATATTGGGTGCTTTGCCATCTACT TCTTGAACCTGCTTACCCTGAAGCCAGGGGAGGCCATGTTTCTGGAGGCCAACGTGCCCC ATGCCTACCTGAAAGGAGACTGCGTGGAATGCATGGCATGTTCAGACAACACGGTGCGTG CTGGCCTGACACCCAAGTTCATCGATGTGTCGACTCTGTGTGAAATGCTCAGCTATACCC CCAGCCCCAGCCAGGACAGGCTCTTCCCTCCAACACAGAGTCAAGAAGACCCTTACCTCG TTATCTATGACCCCCCTGTGCCAGACTTCACTGTTATGAAGATGGAGGTACCTGGCTCCG TTCCTGAATACAAGGTCTTGGCACTAGACTCTGCCAGCATTCTCTTGATGGTTCAGGGAA CAGTGACAGCCAGCACCCCCACAGCCCAGGCAACTATCCCCCTGCAGCGTGGCGGGGTGC TCTTCATTGGGGCCAATGAGAGTGTGTCACTGAAGCTCACTATGCCTGAGGACCTGCTGA TGTTCCGTGCCTGCTGTCTACTGTAGAGACCACAGCCGTCCTGGCTTTCCTCTGCCAGTC ACCCTACCTCCTGGCCAGCCTCACCTCTTCAGACCCAGCCCAAATCCCTTCCCTGCTCTG AGTTCTTTGGGTATACCCTGCAAGAGCAGGGTAGAGGAGTAAGCTTCAAAGTACTGATTC CTGAGCAGCCCTAGCCTGAACCGTCTTCTTCTGGGGGCAGAATCTGAGGACTAAGGGCTG ACACTTCCCTTGTATTCTAGCTACCCTTGAGCTGGGCTCCCCTCAATGCAGGAAGCAGTA GCTCTGTTCCAGCCTGTAGCATTAGGCAGGATGGTGAAACCTGTGATTAGCTCAGCATCA GTCAGAGCAAGACAATTAATTTCTAAGAACAGGGTTCTGGCCCTGGGACTGCCTATTTCC TCAGCTGCAGAGAAGGAGGGGAAGGGGAGGCCTGGGGACTAACGTTGCTTACTCTGGCTC TGTCAAAGCAATTAAAGATCACTTGTGTTGAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGTGCCGGAAGGATGGCCGCTCAACGAGTATTCCCACTTTCCTGTGTGGTGCAGCAGT ATGCCTGGGGGAAGATGGGTTCCAACAGTGAAGTGGCTAGGCTGCTGGCTAGCAGTGATG CACTGGCTCAGATCTCAGAGGACAAGCCATATGCAGAGCTGTGGATGGGGACCCACCCCA GGGGAGATTCCAAGATCCTTGACAACCGCATCTCACAGAAGACCCTAGGCCAGTGGATTG CTGAGAACCAGGAGTGCTTGGGTTCGAAGGTCAAGGACACCTTCAGTGGCAAGCTGCCCT TCCTCTTCAAAGTGCTGTCAGTTGAAACGGCCTTGTCCATCCAGGCACACCCTAACAAGG AGCTGGCAGAGAAGCTGCACCTGCAGGCTCCACAGCACTACCCTGATGCCAACCATAAGC CAGAGATAGCCATTGCCCTCACCTCCTTCCAGGGCTTATGTGGCTTCCGGCCAGTTGAAG AGATTGTGACCTTTCTGACGAAGGTGCCCGAGTTCCAGTTTCTAATTGGAGACAGTGCAG CAACACAGCTGAAGCAGAGCATAAGCCATGACTCCCAGGCTGTGGCCTCTGCTCTGCGGA GCTGTTTCTCCCATCTGATGAATAGCGAAAAGAAGGTAGTGGTGGAGCAGCTCAACCTGT TGGTGAAGCGGATCTCCCAACAAGTGGCTGCTGGAAACAACATGGAAGACATCTGTGGGG AGCTCTTGCTGCAGCTGCACCAGCAGTACCCAGGTGATATTGGGTGCTTTGCCATCTACT TCTTGAACCTGCTTACCCTGAAGCCAGGGGAGGCCATGTTTCTGGAGGCCAACGTGCCCC ATGCCTACCTGAAAGGAGACTGCGTGGAATGCATGGCATGTTCAGACAACACGGTGCGTG CTGGCCTGACACCCAAGTTCATCGATGTGTCGACTCTGTGTGAAATGCTCAGCTATACCC CCAGCCCCAGCCAGGACAGGCTCTTCCCTCCAACACAGAGTCAAGAAGACCCTTACCTCG TTATCTATGACCCCCCTGTGCCAGACTTCACTGTTATGAAGATGGAGGTACCTGGCTCCG TTCCTGAATACAAGGTCTTGGCACTAGACTCTGCCAGCATTCTCTTGATGGTTCAGGGAA CAGTGACAGCCAGCACCCCCACAGCCCAGGCAACTATCCCCCTGCAGCGTGGCGGGGTGC TCTTCATTGGGGCCAATGAGAGTGTGTCACTGAAGCTCACTATGCCTGAGGACCTGCTGA TGTTCCGTGCCTGCTGTCTACTGTAGAGACCACAGCCGTCCTGGCTTTCCTCTGCCAGTC ACCCTACCTCCTGGCCAGCCTCACCTCTTCAGACCCAGCCCAAATCCCTTCCCTGCTCTG AGTTCTTTGGGTATACCCTGCAAGAGCAGGGTAGAGGAGTAAGCTTCAAAGTACTGATTC CTGAGCAGCCCTAGCCTGAACCGTCTTCTTCTGGGGGCAGAATCTGAGGACTAAGGGCTG ACACTTCCCTTGTATTCTAGCTACCCTTGAGCTGGGCTCCCCTCAATGCAGGAAGCAGTA GCTCTGTTCCAGCCTGTAGCATTAGGCAGGATGGTGAAACCTGTGATTAGCTCAGCATCA GTCAGAGCAAGACAATTAATTTCTAAGAACAGGGTTCTGGCCCTGGGACTGCCTATTTCC TCAGCTGCAGAGAAGGAGGGGAAGGGGAGGCCTGGGGACTAACGTTGCTTACTCTGGCTC TGTCAAAGCAATTAAAGATCACTTGTGTTGAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 526-1419, + strand, RNAz p=0.940247 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 526-1419, + strand, RNAz p=0.940247 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 157-360, gnl|bosTau2|chr21 (23060993-23061196) | |
| 157-360, gnl|Hg17|chr15 (72970771-72970974) | |
| 157-360, gnl|Mm7|chr9 (57578441-57578238) | |
| 487-690, gnl|bosTau2|chr21 (23062684-23062887) | |
| 487-690, gnl|canFam2|chr30 (40933582-40933793) | |
| 487-690, gnl|dasNov1|scaffold_5247 (15634-15420) | |
| 487-690, gnl|echTel1|scaffold_304640 (80333-80511) | |
| 487-690, gnl|fr1|chrUn (111078740-111078535) | |
| 487-690, gnl|galGal2|chr10 (324942-325147) | |
| 487-690, gnl|hg17|chr15 (72972512-72972727) | |
| 487-690, gnl|Hg17|chr15 (72972518-72972724) | |
| 487-690, gnl|mm7|chr9 (57576398-57576184) | |
| 487-690, gnl|Mm7|chr9 (57576390-57576187) | |
| 487-690, gnl|monDom2|scaffold_41 (2602956-2602741) | |
| 487-690, gnl|oryCun1|scaffold_97997 (71-290) | |
| 487-690, gnl|panTro1|chr16_random (22101280-22101495) | |
| 487-690, gnl|rheMac2|chr7 (53708978-53709193) | |
| 487-690, gnl|rn3|chr8 (61322058-61321844) | |
| 487-690, gnl|tetNig1|chrUn_random (25907929-25908126) | |
| 487-690, gnl|xenTro1|scaffold_287 (1166110-1165911) | |
| 1066-1657, gnl|bosTau2|chr21 (23065633-23066235) | |
| 1066-1657, gnl|Hg17|chr15 (72976904-72977503) | |
| 1066-1657, gnl|Mm7|chr9 (57572606-57572025) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 157-360, gnl|bosTau2|chr21 (23060993-23061196) | |
| 157-360, gnl|Hg17|chr15 (72970771-72970974) | |
| 157-360, gnl|Mm7|chr9 (57578441-57578238) | |
| 487-690, gnl|bosTau2|chr21 (23062684-23062887) | |
| 487-690, gnl|canFam2|chr30 (40933582-40933793) | |
| 487-690, gnl|dasNov1|scaffold_5247 (15634-15420) | |
| 487-690, gnl|echTel1|scaffold_304640 (80333-80511) | |
| 487-690, gnl|fr1|chrUn (111078740-111078535) | |
| 487-690, gnl|galGal2|chr10 (324942-325147) | |
| 487-690, gnl|hg17|chr15 (72972512-72972727) | |
| 487-690, gnl|Hg17|chr15 (72972518-72972724) | |
| 487-690, gnl|mm7|chr9 (57576398-57576184) | |
| 487-690, gnl|Mm7|chr9 (57576390-57576187) | |
| 487-690, gnl|monDom2|scaffold_41 (2602956-2602741) | |
| 487-690, gnl|oryCun1|scaffold_97997 (71-290) | |
| 487-690, gnl|panTro1|chr16_random (22101280-22101495) | |
| 487-690, gnl|rheMac2|chr7 (53708978-53709193) | |
| 487-690, gnl|rn3|chr8 (61322058-61321844) | |
| 487-690, gnl|tetNig1|chrUn_random (25907929-25908126) | |
| 487-690, gnl|xenTro1|scaffold_287 (1166110-1165911) | |
| 1066-1657, gnl|bosTau2|chr21 (23065633-23066235) | |
| 1066-1657, gnl|Hg17|chr15 (72976904-72977503) | |
| 1066-1657, gnl|Mm7|chr9 (57572606-57572025) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cty (0.41632) | |
| cga (0.279096) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| spl (0.143184) | |
| pla (0.133672) | |
| cly (0.120642) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.41632) | |
| cga (0.279096) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| spl (0.143184) | |
| pla (0.133672) | |
| cly (0.120642) |