Non-Coding RNA Search

Ss1.1-Tes1-TES01G120018.5

Sequence:


               
               TTTTTTGAAAAGTAAACTGGTTTAATTCTAAACAGTACCAGAGCTGGGTGCTGGAGGGGC
TGACCCTGAACCCACCATAGCTCTTAGCAGGCAGCATGGAACTCTGACTTCCCACCCACA
GGCCAGGCTTCTTCTCATCTGAGGGCCTGCCTGTGCTAGGGGGGCCCAGGACCCTCAGGG
TGGGCGGGCCCACCCCTCCCCTGAGTCACCAGTGCCTCGGTACCCACCTCCCCACCGACC
AGCAGTGACACGGCACCCTCCACGCGGCCTGTGGCTGCCAGGGCCACCACTGCCTGTTCT
GTGGGGAAGCCCATGCGCTCCAGCTGCTGCAGCCGCAGAGAGGAGACGGAGGACTTAGGC
AGCCAAAGTGGGGCCTCGGGACCCTGGGCTGGCCCCTCAAGGAGCGAGGCCTGAATCCCC
TCCTGCAGCATCTGCTCATCCAGGGCTGCCCACAGTGGGGTCCCTGGGGGGAAGCTGGGC
CCAGACCAGGCCAGTCCTGCCTCTGAGGAACCCTCCCAGTGCGGCTGCACCAGCCTCAGG
CCTGGTGGGAGCGGGGCTGAGCCTTCACTGTGGGACCACAGGCTAGCGGAGGCCATGTAA
GGAGGTCCAGGTGTGGGAGGCCTTGTTCCAGCAGGATGGGTGACAGGCAGCTCAGCCAGG
CTGCCTGGGGTAGGAAGGAGGCGGAGGGGCCAACTCCCTGCCAGGGCCCTGCACAGGACG
CCCTCCTGCAGCGCCTGCAGCCGCCGCTCAGAAAGCTCCAGCCACTGGAAGGCCCCGGCT
GCATAAGCCACGCCGGCAAGGAGACCACAGAAGAGCTGCAGGAAGGGTGGCTCGGAGCTT
AGCAGTGGCGTCAGGGCGAGGAGCAGCCAGGGCAGGAGCCAGGGTGGCATTGCCCCTCGG
GGCTGCCTAAGGCGGTAACACTGCCCTGCCAGCATGGCCAGGTGGACAGGCATGTATCCA
CAGCCCCCGGCGGCCCTGGACAACCCAAGGCCTGCCAGCAGCACAGCCATTAGCCCACAG
GCCAGGGCAAGCAGGGTGGAGGCATGCAGGAACCGCAGTGTGCCCAGATGGCACTCCTGC
CGCCAGCCCAGCGTGGTCAGGAGCAGCAGGCTCAGGAGCAGACTGGGCAGGGCCGTGTGG
CCCAGGGCATGTGTCAGCAGCCGGTGTGCCTGCCAAGGGTCCAGCAGCAGCTCTGGGGCC
AGGACAAGGCTGGGGCCAGCCCCCAGCAGCCACAGGCTGCTTATTAGAAGCATCAGGATG
GAGGAAGCGAGAGGCAGCGCCGGAGATGGTAGGCCAGGTGGGCCTCTGGCATGCATAACT
TGGCTGAAGGTGGTCAAAGGTGGTCTTGGGGCTGTGTGTGCGGAGCGCGCCCCCCGCCCC
CAGAAGGCCGGGTGGGGCCCTCGGCTGGGAGTCGGTGCTCCAGCTTCCCGCCGAAGCCCG
AGCGCCCCGAGCCCATTCTACTCGCACTCGGGCGCGTGACCCTGGTCGACCGGTCGGCGC
GCCACCCACTCCTCCGCCGCCCGCCGATTAGTCAGCAGTTGTTCTAGGCCCGGGTCCCTT
CCCCCAGCCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTGAAAAGTAAACTGGTTTAATTCTAAACAGTACCAGAGCTGGGTGCTGGAGGGGC
TGACCCTGAACCCACCATAGCTCTTAGCAGGCAGCATGGAACTCTGACTTCCCACCCACA
GGCCAGGCTTCTTCTCATCTGAGGGCCTGCCTGTGCTAGGGGGGCCCAGGACCCTCAGGG
TGGGCGGGCCCACCCCTCCCCTGAGTCACCAGTGCCTCGGTACCCACCTCCCCACCGACC
AGCAGTGACACGGCACCCTCCACGCGGCCTGTGGCTGCCAGGGCCACCACTGCCTGTTCT
GTGGGGAAGCCCATGCGCTCCAGCTGCTGCAGCCGCAGAGAGGAGACGGAGGACTTAGGC
AGCCAAAGTGGGGCCTCGGGACCCTGGGCTGGCCCCTCAAGGAGCGAGGCCTGAATCCCC
TCCTGCAGCATCTGCTCATCCAGGGCTGCCCACAGTGGGGTCCCTGGGGGGAAGCTGGGC
CCAGACCAGGCCAGTCCTGCCTCTGAGGAACCCTCCCAGTGCGGCTGCACCAGCCTCAGG
CCTGGTGGGAGCGGGGCTGAGCCTTCACTGTGGGACCACAGGCTAGCGGAGGCCATGTAA
GGAGGTCCAGGTGTGGGAGGCCTTGTTCCAGCAGGATGGGTGACAGGCAGCTCAGCCAGG
CTGCCTGGGGTAGGAAGGAGGCGGAGGGGCCAACTCCCTGCCAGGGCCCTGCACAGGACG
CCCTCCTGCAGCGCCTGCAGCCGCCGCTCAGAAAGCTCCAGCCACTGGAAGGCCCCGGCT
GCATAAGCCACGCCGGCAAGGAGACCACAGAAGAGCTGCAGGAAGGGTGGCTCGGAGCTT
AGCAGTGGCGTCAGGGCGAGGAGCAGCCAGGGCAGGAGCCAGGGTGGCATTGCCCCTCGG
GGCTGCCTAAGGCGGTAACACTGCCCTGCCAGCATGGCCAGGTGGACAGGCATGTATCCA
CAGCCCCCGGCGGCCCTGGACAACCCAAGGCCTGCCAGCAGCACAGCCATTAGCCCACAG
GCCAGGGCAAGCAGGGTGGAGGCATGCAGGAACCGCAGTGTGCCCAGATGGCACTCCTGC
CGCCAGCCCAGCGTGGTCAGGAGCAGCAGGCTCAGGAGCAGACTGGGCAGGGCCGTGTGG
CCCAGGGCATGTGTCAGCAGCCGGTGTGCCTGCCAAGGGTCCAGCAGCAGCTCTGGGGCC
AGGACAAGGCTGGGGCCAGCCCCCAGCAGCCACAGGCTGCTTATTAGAAGCATCAGGATG
GAGGAAGCGAGAGGCAGCGCCGGAGATGGTAGGCCAGGTGGGCCTCTGGCATGCATAACT
TGGCTGAAGGTGGTCAAAGGTGGTCTTGGGGCTGTGTGTGCGGAGCGCGCCCCCCGCCCC
CAGAAGGCCGGGTGGGGCCCTCGGCTGGGAGTCGGTGCTCCAGCTTCCCGCCGAAGCCCG
AGCGCCCCGAGCCCATTCTACTCGCACTCGGGCGCGTGACCCTGGTCGACCGGTCGGCGC
GCCACCCACTCCTCCGCCGCCCGCCGATTAGTCAGCAGTTGTTCTAGGCCCGGGTCCCTT
CCCCCAGCCCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61886189|ref|XP_582708.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61886189|ref|XP_582708.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               771-1169, + strand, RNAz p=0.945359

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               771-1169, + strand, RNAz p=0.945359

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               333-623, gnl|bosTau2|chr17 (39304036-39304326)
               

               
               333-623, gnl|Hg17|chr22 (27980868-27981158)
               

               
               333-623, gnl|Mm7|chr11 (5057721-5057434)
               


               
               771-1169, gnl|bosTau2|chr17 (39305419-39305821)
               

               
               771-1169, gnl|Hg17|chr22 (27984360-27984762)
               

               
               771-1169, gnl|Mm7|chr11 (5056425-5056023)
               


               
               1359-1565, gnl|bosTau2|chr17 (39308576-39308782)
               

               
               1359-1565, gnl|Hg17|chr22 (27988291-27988495)
               

               
               1359-1565, gnl|Mm7|chr11 (5051598-5051413)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               333-623, gnl|bosTau2|chr17 (39304036-39304326)
               

               
               333-623, gnl|Hg17|chr22 (27980868-27981158)
               

               
               333-623, gnl|Mm7|chr11 (5057721-5057434)
               


               
               771-1169, gnl|bosTau2|chr17 (39305419-39305821)
               

               
               771-1169, gnl|Hg17|chr22 (27984360-27984762)
               

               
               771-1169, gnl|Mm7|chr11 (5056425-5056023)
               


               
               1359-1565, gnl|bosTau2|chr17 (39308576-39308782)
               

               
               1359-1565, gnl|Hg17|chr22 (27988291-27988495)
               

               
               1359-1565, gnl|Mm7|chr11 (5051598-5051413)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               hyp (0.285673)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

	333-623, gnl\|bosTau2\|chr17 (39304036-39304326)
	333-623, gnl\|Hg17\|chr22 (27980868-27981158)
	333-623, gnl\|Mm7\|chr11 (5057721-5057434)

	771-1169, gnl\|bosTau2\|chr17 (39305419-39305821)
	771-1169, gnl\|Hg17\|chr22 (27984360-27984762)
	771-1169, gnl\|Mm7\|chr11 (5056425-5056023)

	1359-1565, gnl\|bosTau2\|chr17 (39308576-39308782)
	1359-1565, gnl\|Hg17\|chr22 (27988291-27988495)
	1359-1565, gnl\|Mm7\|chr11 (5051598-5051413)

	hyp (0.285673)
	nmm (0.132802)
	ese (0.126502)
	eep (0.122564)
	cty (0.10408)