Ss1.1-Tes1-TES01G120066.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACCGGGTTTGCCGGCCCGGGGCAGTGACAGGGATCCTTGTGTGTGGTTACGGTTTCGG CTTCCCCGTGGCAGGGAGAGGGGTCTGGGGTCCTCTGGCGGCCACAGGACCGACGTCAGC CGCGGCCGGAACCACAGTCGAAGGCCGGGCGCGGCATGTCCCGGGTGCCTCGACGCAGGC AGTGAGGCGCGCGGCAAGCGGGATGGGTCGACGCCGGGCGCCAGAGCTGTACCGGGCCCC GTTCCCGTTGTACGCGCTTCAGGTTGAGCCGAGCGCGGGGCTGCTCATCGCGGCGGGCGG AGGAGGTGCTGCCAAGACCGGTATAAAGAACGGCGTGCACTTTCTGAAGCTAGAGCGGAT TCATGGGCACCTCAGTGCCTCTCTGCTCCACTCCCATGACACGGAGACTCGCGCCACCAT GAACTTGGCGCTGGCTGGCAACATCCTTGCTGCAGGGCAGGATGCCCGCTGTCAGCTCTT GCGCTTCCAGACCCAACAGCAGAAGGGCAAAAACAAGGCAGAGAAGGCAGCTTCCAAGGA GCAGGGGCCTCGACAGAGGAAAGGGGCTGCCCCAGCAGAGAAGAAGTCTGGAGCTGAAAC CCACCAGGAGGGGTTAGAATTCAGCGTAGAGAATTTGCAGGCCGTGCAGACAGACTTCAG CCCTGACCCACTGCAGAAAGTTGTACGCTTCAACCATGATGCTACCCTGCTTGCCACTGG AGGGACAGATGGCTACGTTCGTGTCTGGAAGGTCCCCACCTTGGAGAAAGTTTTGGAGTT CCGGGCCCATGAAGGAGAGATTGAGGACCTGGCTGTGGGGCCCGACGGCAAGTTGGTTAC TGTGGGCCGGGACCTTAAGGCCTCTGTGTGGCAGAAGGATCAGCTGGTGACCCAGCTGCA CTGGCAAGAGAACGGACCCACCTTTTCTAACACGCCTTACCGCTACCAGGCCTGCAGGTT CGGGCCAGTTCCAGACCAGCCTGCCGGGCTGCGGCTCTTCACAGTGCAGATTCCCCACAA GCGTCTGCGCCAGCCCCCACCCTGCTACCTCACAGCCTGGGATGGCTCCACGTTCTTACC CCTTCGGACCAGGTCCTGTGGCCATGAAGTCATCTCCTGCCTCAGTGTCAGTGAATCGGG CACCTTCCTGGGCCTGGGCACGGTCACTGGCTCTGTTGCCATCTACATAGCTTTCTCCCT CCAGCGCCTGTACTATGTGAAGGAGGCCCATGGCATTGTGGTGACGGATGTGGCCTTTCT ACCTGAGAAGGGGCGTGGTCCAGAGCTCCTTGGGTCCCACGAAACTGCTCTGTTCTCTGT GGCTGTGGATAGTCGTTGCCAGCTACACCTGCTGCCCTCACGACGGAGTGTTCCTGTGTG GCTGCTGCTGCTGCTGTGTGTCGGGCTTATTGTTATGACCATCCTGCTGCTCCAGAGTGC CTTTCCAGGTTTTCTTTAGCCTCCTTGCTCCCAGAGAACCAGGGGCCTGGGCACTGCCAC CTCTAGACCAGAGTGGAGGCCTGGACCCCACTGCTCACTCCACTGGGGCCCACAGCTGAG GTTGCCTCTGATGAGACTACTGGGCAATGCCTGCCCTTCCCAGTTAAAGTTTGGCTGTGG CCTCGTGCGACCCTGAGTTCTGGGAACCTTGTATTCATCATCTGTGGATCCGCCCAGGAC CGTGGTGTCCTTCTTCCCTCTACCTACCAGAGGCTCCAAGGTGGGGCTTGTCCTTCCCCC AGAAATATGTGAAGATGCCCAAGAACTTGGAGGCACTGCTGTCCTTCCTGCCGAAAGCCG TTTTCTCCTGCTCCCCGCACAGCCTCGTGGCCGGCTGCTCTCCACAGGAGCCCCTCCCAT TTGCTGGGGCAGCCCCTGGCCTGGGACTTGCTCTTAGGGAAGAAAGGAGTCAGAGGAAGA CCGAAGCAGTACTCTTTGCATTCAGCTGGGCAGCGCCAAGCCAGCCGAGCTCAATATGCA GTATGTTCCTGGACAGGCTAGCTTAGCCTTGAGCCAAGGGAAAATGAACCTCAGCCCATT TGGCAGGAAACGGTAATATTTAATAAACAAGGGAAAACTGAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACCGGGTTTGCCGGCCCGGGGCAGTGACAGGGATCCTTGTGTGTGGTTACGGTTTCGG CTTCCCCGTGGCAGGGAGAGGGGTCTGGGGTCCTCTGGCGGCCACAGGACCGACGTCAGC CGCGGCCGGAACCACAGTCGAAGGCCGGGCGCGGCATGTCCCGGGTGCCTCGACGCAGGC AGTGAGGCGCGCGGCAAGCGGGATGGGTCGACGCCGGGCGCCAGAGCTGTACCGGGCCCC GTTCCCGTTGTACGCGCTTCAGGTTGAGCCGAGCGCGGGGCTGCTCATCGCGGCGGGCGG AGGAGGTGCTGCCAAGACCGGTATAAAGAACGGCGTGCACTTTCTGAAGCTAGAGCGGAT TCATGGGCACCTCAGTGCCTCTCTGCTCCACTCCCATGACACGGAGACTCGCGCCACCAT GAACTTGGCGCTGGCTGGCAACATCCTTGCTGCAGGGCAGGATGCCCGCTGTCAGCTCTT GCGCTTCCAGACCCAACAGCAGAAGGGCAAAAACAAGGCAGAGAAGGCAGCTTCCAAGGA GCAGGGGCCTCGACAGAGGAAAGGGGCTGCCCCAGCAGAGAAGAAGTCTGGAGCTGAAAC CCACCAGGAGGGGTTAGAATTCAGCGTAGAGAATTTGCAGGCCGTGCAGACAGACTTCAG CCCTGACCCACTGCAGAAAGTTGTACGCTTCAACCATGATGCTACCCTGCTTGCCACTGG AGGGACAGATGGCTACGTTCGTGTCTGGAAGGTCCCCACCTTGGAGAAAGTTTTGGAGTT CCGGGCCCATGAAGGAGAGATTGAGGACCTGGCTGTGGGGCCCGACGGCAAGTTGGTTAC TGTGGGCCGGGACCTTAAGGCCTCTGTGTGGCAGAAGGATCAGCTGGTGACCCAGCTGCA CTGGCAAGAGAACGGACCCACCTTTTCTAACACGCCTTACCGCTACCAGGCCTGCAGGTT CGGGCCAGTTCCAGACCAGCCTGCCGGGCTGCGGCTCTTCACAGTGCAGATTCCCCACAA GCGTCTGCGCCAGCCCCCACCCTGCTACCTCACAGCCTGGGATGGCTCCACGTTCTTACC CCTTCGGACCAGGTCCTGTGGCCATGAAGTCATCTCCTGCCTCAGTGTCAGTGAATCGGG CACCTTCCTGGGCCTGGGCACGGTCACTGGCTCTGTTGCCATCTACATAGCTTTCTCCCT CCAGCGCCTGTACTATGTGAAGGAGGCCCATGGCATTGTGGTGACGGATGTGGCCTTTCT ACCTGAGAAGGGGCGTGGTCCAGAGCTCCTTGGGTCCCACGAAACTGCTCTGTTCTCTGT GGCTGTGGATAGTCGTTGCCAGCTACACCTGCTGCCCTCACGACGGAGTGTTCCTGTGTG GCTGCTGCTGCTGCTGTGTGTCGGGCTTATTGTTATGACCATCCTGCTGCTCCAGAGTGC CTTTCCAGGTTTTCTTTAGCCTCCTTGCTCCCAGAGAACCAGGGGCCTGGGCACTGCCAC CTCTAGACCAGAGTGGAGGCCTGGACCCCACTGCTCACTCCACTGGGGCCCACAGCTGAG GTTGCCTCTGATGAGACTACTGGGCAATGCCTGCCCTTCCCAGTTAAAGTTTGGCTGTGG CCTCGTGCGACCCTGAGTTCTGGGAACCTTGTATTCATCATCTGTGGATCCGCCCAGGAC CGTGGTGTCCTTCTTCCCTCTACCTACCAGAGGCTCCAAGGTGGGGCTTGTCCTTCCCCC AGAAATATGTGAAGATGCCCAAGAACTTGGAGGCACTGCTGTCCTTCCTGCCGAAAGCCG TTTTCTCCTGCTCCCCGCACAGCCTCGTGGCCGGCTGCTCTCCACAGGAGCCCCTCCCAT TTGCTGGGGCAGCCCCTGGCCTGGGACTTGCTCTTAGGGAAGAAAGGAGTCAGAGGAAGA CCGAAGCAGTACTCTTTGCATTCAGCTGGGCAGCGCCAAGCCAGCCGAGCTCAATATGCA GTATGTTCCTGGACAGGCTAGCTTAGCCTTGAGCCAAGGGAAAATGAACCTCAGCCCATT TGGCAGGAAACGGTAATATTTAATAAACAAGGGAAAACTGAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 567-1545, - strand, RNAz p=0.925306 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 567-1545, - strand, RNAz p=0.925306 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-337, gnl|bosTau2|chr11 (52306037-52305700) | |
| 1-337, gnl|Hg17|chr2 (27269141-27268806) | |
| 1-337, gnl|Mm7|chr5 (29992802-29992487) | |
| 527-753, gnl|bosTau2|chr11 (52304519-52304293) | |
| 527-753, gnl|canFam2|chr17 (24099023-24099182) | |
| 527-753, gnl|dasNov1|scaffold_15300 (6093-5934) | |
| 527-753, gnl|echTel1|scaffold_311276 (16308-16148) | |
| 527-753, gnl|fr1|chrUn (223833433-223833250) | |
| 527-753, gnl|hg17|chr2 (27267634-27267793) | |
| 527-753, gnl|Hg17|chr2 (27267860-27267634) | |
| 527-753, gnl|loxAfr1|scaffold_20376 (3865-4024) | |
| 527-753, gnl|mm7|chr5 (29991230-29991389) | |
| 527-753, gnl|Mm7|chr5 (29991456-29991230) | |
| 527-753, gnl|monDom2|scaffold_1 (149158630-149158471) | |
| 527-753, gnl|oryCun1|scaffold_189177 (15540-15701) | |
| 527-753, gnl|panTro1|chr12 (28206256-28206415) | |
| 527-753, gnl|rheMac2|chr13 (27085587-27085746) | |
| 527-753, gnl|rn3|chr6 (25406239-25406080) | |
| 527-753, gnl|tetNig1|chrUn_random (32301033-32300857) | |
| 527-753, gnl|xenTro1|scaffold_6236 (2252-2094) | |
| 946-1131, gnl|bosTau2|chr11 (52303625-52303440) | |
| 946-1131, gnl|canFam2|chr17 (24098172-24098351) | |
| 946-1131, gnl|danRer3|chrNA (53875548-53875381) | |
| 946-1131, gnl|dasNov1|scaffold_15300 (6959-6780) | |
| 946-1131, gnl|echTel1|scaffold_103623 (2287-2466) | |
| 946-1131, gnl|fr1|chrUn (223834195-223834016) | |
| 946-1131, gnl|galGal2|chrUn (82517221-82517400) | |
| 946-1131, gnl|hg17|chr2 (27266747-27266926) | |
| 946-1131, gnl|Hg17|chr2 (27266934-27266749) | |
| 946-1131, gnl|loxAfr1|scaffold_2034 (741-562) | |
| 946-1131, gnl|mm7|chr5 (29990402-29990581) | |
| 946-1131, gnl|Mm7|chr5 (29990589-29990404) | |
| 946-1131, gnl|monDom2|scaffold_1 (149159579-149159400) | |
| 946-1131, gnl|oryCun1|scaffold_189177 (14734-14913) | |
| 946-1131, gnl|panTro1|chr12 (28205369-28205548) | |
| 946-1131, gnl|rheMac2|chr13 (27084700-27084879) | |
| 946-1131, gnl|rn3|chr6 (25407067-25406888) | |
| 946-1131, gnl|tetNig1|chrUn_random (32302064-32301885) | |
| 946-1131, gnl|xenTro1|scaffold_6236 (4770-4591) | |
| 1348-1689, gnl|bosTau2|chr11 (52302729-52302388) | |
| 1348-1689, gnl|Hg17|chr2 (27266043-27265701) | |
| 1348-1689, gnl|Mm7|chr5 (29988270-29987960) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-337, gnl|bosTau2|chr11 (52306037-52305700) | |
| 1-337, gnl|Hg17|chr2 (27269141-27268806) | |
| 1-337, gnl|Mm7|chr5 (29992802-29992487) | |
| 527-753, gnl|bosTau2|chr11 (52304519-52304293) | |
| 527-753, gnl|canFam2|chr17 (24099023-24099182) | |
| 527-753, gnl|dasNov1|scaffold_15300 (6093-5934) | |
| 527-753, gnl|echTel1|scaffold_311276 (16308-16148) | |
| 527-753, gnl|fr1|chrUn (223833433-223833250) | |
| 527-753, gnl|hg17|chr2 (27267634-27267793) | |
| 527-753, gnl|Hg17|chr2 (27267860-27267634) | |
| 527-753, gnl|loxAfr1|scaffold_20376 (3865-4024) | |
| 527-753, gnl|mm7|chr5 (29991230-29991389) | |
| 527-753, gnl|Mm7|chr5 (29991456-29991230) | |
| 527-753, gnl|monDom2|scaffold_1 (149158630-149158471) | |
| 527-753, gnl|oryCun1|scaffold_189177 (15540-15701) | |
| 527-753, gnl|panTro1|chr12 (28206256-28206415) | |
| 527-753, gnl|rheMac2|chr13 (27085587-27085746) | |
| 527-753, gnl|rn3|chr6 (25406239-25406080) | |
| 527-753, gnl|tetNig1|chrUn_random (32301033-32300857) | |
| 527-753, gnl|xenTro1|scaffold_6236 (2252-2094) | |
| 946-1131, gnl|bosTau2|chr11 (52303625-52303440) | |
| 946-1131, gnl|canFam2|chr17 (24098172-24098351) | |
| 946-1131, gnl|danRer3|chrNA (53875548-53875381) | |
| 946-1131, gnl|dasNov1|scaffold_15300 (6959-6780) | |
| 946-1131, gnl|echTel1|scaffold_103623 (2287-2466) | |
| 946-1131, gnl|fr1|chrUn (223834195-223834016) | |
| 946-1131, gnl|galGal2|chrUn (82517221-82517400) | |
| 946-1131, gnl|hg17|chr2 (27266747-27266926) | |
| 946-1131, gnl|Hg17|chr2 (27266934-27266749) | |
| 946-1131, gnl|loxAfr1|scaffold_2034 (741-562) | |
| 946-1131, gnl|mm7|chr5 (29990402-29990581) | |
| 946-1131, gnl|Mm7|chr5 (29990589-29990404) | |
| 946-1131, gnl|monDom2|scaffold_1 (149159579-149159400) | |
| 946-1131, gnl|oryCun1|scaffold_189177 (14734-14913) | |
| 946-1131, gnl|panTro1|chr12 (28205369-28205548) | |
| 946-1131, gnl|rheMac2|chr13 (27084700-27084879) | |
| 946-1131, gnl|rn3|chr6 (25407067-25406888) | |
| 946-1131, gnl|tetNig1|chrUn_random (32302064-32301885) | |
| 946-1131, gnl|xenTro1|scaffold_6236 (4770-4591) | |
| 1348-1689, gnl|bosTau2|chr11 (52302729-52302388) | |
| 1348-1689, gnl|Hg17|chr2 (27266043-27265701) | |
| 1348-1689, gnl|Mm7|chr5 (29988270-29987960) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| nms (0.213858) | |
| jej (0.197844) | |
| nje (0.16592) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) | |
| jej (0.197844) | |
| nje (0.16592) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| eje (0.0988338) |