Non-Coding RNA Search

Ss1.1-Tes1-TES01H010002.5

Sequence:


               
               ATTTTCAGTTGTAGAGAAAAGTTCTTGCCCAGATCCCCACTCATCCTTCAGCTCACCCCT
TCGCTCACAGGGACCAGGAGAAAGCATGAGCCATGGATGCTAAGGGTGAACTTCTGATGG
GAGACTGAGGCCAGGTCAGGGAGAGAGAATTCAGTGTGGCAGCACGGGAGGGACCAGAAG
ACCTGGATCTCCACCCAGCCTTAAGACTTGTGAACCCCGTGACTGTAGATGAGTTGACCG
ACCTCTCCAAGCCTCAGGAGCCTCTGTAAATTAGGGTTCCTGCCTCCTGGGGCTGGTGTG
GAAATTCACTGAGATAACACTTACAAGTGCCTTGCACAGTGCCTGGCGCACGGGTGCTCA
TCCCACCTCCCCTGGCTCTCGCCTTTGGGTGGGGAAGGCACCGCGCTACACTACACGGGG
AGCCCCTCTGCTCCCAAGGCCGGGGTGGGCCTGAGTGAGGGGCAGATTCTTGCCCCGCCA
GAGCTGGACCAATGACTTTATGAAAAACCCAGCCTGTGATTTTTTCAATCTAAGCATTAA
AAGCCCCTAAACCCTTGTGTGTGGGCCCTTTTTTCCCTCCTGTGCGTCAGCAATTGGAAG
GTGGTAGTTCACATGTTCCCCTCTTAGCTTCTTCCCTGTTTGCAGAGAAGGGTCCTCTTG
GGTAGCTGGGGAATGGTGGGAACAGTCTCTCATCGTCTGAGCAAAGCTGCAGGGTCTCTG
TGAGGGGCCTGTCCGGTGGTTTGCGTGCTGCTCAGGGCACTGTGGAGAGTAGGGCGCCGG
TAGATGGGAGCCTGGCCTTTCCAGCTAACTCGGTTCTTCTGTCTGCCGAATGGCTGGGTG
GTGCATCCCTTTAGCAAAGGCTGGGGAAGTGAATCCACAGGAGAGCAGAGACCACCCTAA
TAAGGAACATATGGGACAGGTCATCTCCAGCTCTCAAAATGTGTACGATTTTTAGTCTAA
GTGTTCCCTCTCCCGTTGTATAATAATTTGAGGGGCCTTTGTCCTTGGTTCTTGGGAGGG
AACCTCTAAATCCTCAGGATTTCCCAAGGGATAGGAGTTTCTTACTCATGGTGGGACCCT
TGGACCACACTTGCCTTTATGCTGAAATTTGACTCAGGAGGGCTGACCATGCCTGAAAGA
CCAGCCAGGTGATATCAGCCTGACCTTCACGGGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTCAGTTGTAGAGAAAAGTTCTTGCCCAGATCCCCACTCATCCTTCAGCTCACCCCT
TCGCTCACAGGGACCAGGAGAAAGCATGAGCCATGGATGCTAAGGGTGAACTTCTGATGG
GAGACTGAGGCCAGGTCAGGGAGAGAGAATTCAGTGTGGCAGCACGGGAGGGACCAGAAG
ACCTGGATCTCCACCCAGCCTTAAGACTTGTGAACCCCGTGACTGTAGATGAGTTGACCG
ACCTCTCCAAGCCTCAGGAGCCTCTGTAAATTAGGGTTCCTGCCTCCTGGGGCTGGTGTG
GAAATTCACTGAGATAACACTTACAAGTGCCTTGCACAGTGCCTGGCGCACGGGTGCTCA
TCCCACCTCCCCTGGCTCTCGCCTTTGGGTGGGGAAGGCACCGCGCTACACTACACGGGG
AGCCCCTCTGCTCCCAAGGCCGGGGTGGGCCTGAGTGAGGGGCAGATTCTTGCCCCGCCA
GAGCTGGACCAATGACTTTATGAAAAACCCAGCCTGTGATTTTTTCAATCTAAGCATTAA
AAGCCCCTAAACCCTTGTGTGTGGGCCCTTTTTTCCCTCCTGTGCGTCAGCAATTGGAAG
GTGGTAGTTCACATGTTCCCCTCTTAGCTTCTTCCCTGTTTGCAGAGAAGGGTCCTCTTG
GGTAGCTGGGGAATGGTGGGAACAGTCTCTCATCGTCTGAGCAAAGCTGCAGGGTCTCTG
TGAGGGGCCTGTCCGGTGGTTTGCGTGCTGCTCAGGGCACTGTGGAGAGTAGGGCGCCGG
TAGATGGGAGCCTGGCCTTTCCAGCTAACTCGGTTCTTCTGTCTGCCGAATGGCTGGGTG
GTGCATCCCTTTAGCAAAGGCTGGGGAAGTGAATCCACAGGAGAGCAGAGACCACCCTAA
TAAGGAACATATGGGACAGGTCATCTCCAGCTCTCAAAATGTGTACGATTTTTAGTCTAA
GTGTTCCCTCTCCCGTTGTATAATAATTTGAGGGGCCTTTGTCCTTGGTTCTTGGGAGGG
AACCTCTAAATCCTCAGGATTTCCCAAGGGATAGGAGTTTCTTACTCATGGTGGGACCCT
TGGACCACACTTGCCTTTATGCTGAAATTTGACTCAGGAGGGCTGACCATGCCTGAAAGA
CCAGCCAGGTGATATCAGCCTGACCTTCACGGGGGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               242-430, + strand, RNAz p=0.893374

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               242-430, + strand, RNAz p=0.893374

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               291-386, + strand, RNAmicro p=0.93361

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               291-386, + strand, RNAmicro p=0.93361

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of BC000417, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC000417, +

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               44-447, gnl|bosTau2|chr5 (16611968-16612372)
               

               
               44-447, gnl|Hg17|chr12 (52861725-52861324)
               


               
               450-1158, gnl|bosTau2|chr5 (16612408-16613092)
               

               
               450-1158, gnl|Hg17|chr12 (52861295-52860190)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-447, gnl|bosTau2|chr5 (16611968-16612372)
               

               
               44-447, gnl|Hg17|chr12 (52861725-52861324)
               


               
               450-1158, gnl|bosTau2|chr5 (16612408-16613092)
               

               
               450-1158, gnl|Hg17|chr12 (52861295-52860190)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               pgl (0.236967)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

	44-447, gnl\|bosTau2\|chr5 (16611968-16612372)
	44-447, gnl\|Hg17\|chr12 (52861725-52861324)

	450-1158, gnl\|bosTau2\|chr5 (16612408-16613092)
	450-1158, gnl\|Hg17\|chr12 (52861295-52860190)

	pgl (0.236967)
	col (0.195008)
	fbs (0.175346)
	cje (0.165235)
	ese (0.126502)
	ebs (0.118301)