Ss1.1-Tes1-TES01H010012.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAAAAGCTTGTTCGGCTCAGAGATCAGTTGTGCAGTGACCACACCATACCCCACTCTA AGCCACAGGACACAGAGGTGTCACAAGGCCAGGATCCAGAGAGGGCAGGGGAGGAGAGTG AGCTCGCAGCATGGAGCCGGTCCAGGACACCTACCGCCCGCCACTGGAGTACGTGAAGGG GGTCCCTCTCATCAAGTACTTTGCAGAGGCACTGGGGCCACTGGAGAGTTTCCAAGCTTG GCCCGATGACGTGCTGATCAGCACCTATCCCAAATCTGGTACCACCTGGGTGAGCGAGAT CCTGGACCTAATCTACCAGGGTGGTGACCTGCAGAAGTGTCAGAGAGCCCCCATCTTTGT GCGGGTGCCCTTCCTTGAGTTCAAAATCCCCAGGTGTCCCACAGGTTTTGAGCTGCTGAA AGATACACCAGCCCCACGGCTCCTCAAGACACACTTGCCCCTGGCCCTGCTACCCCAGAC TCTGCTGGACCAGAAGGTCAAGGTGGTCTACGTCGCCCGCAACGCAAAGGACGTGGCCGT CTCCTATTACCACTTCTACCGTATGGCCAAAGTGCACCCTAACCCTGGCACGTGGGACAG CTTCCTGGAAGACTTCATGGCCGGAGAAGTGTCCTACGGGTCCTGGTACCAGCACGTGCA GGAGTGGTGGGAGCTGCGTCACACCCACCCTGTCCTCTATCTCTTCTACGAGGACATGAA GGAGAACCCCAAGAGGGAGATTCAGAAGATCCTGGAGTTTGTGGGGCGCTCGCTGCCAGA GGAGACGGTGGAGGACATCGTCCAGCACACGTCCTTCCAGGAGATGAAGAACAACGCCAT GACCAACTACCGCACCCTCCCCTCCGACCTCCTGGACCACAGCATCTCGGCCTTCATGAG GAAAGGCATCACTGGAGATTGGAAAAGCACCTTCACAGTGGCCCAGAACGAGCGCTTTGA GGCCGACTATGCTGAGAAGATGGCAGGCTGTAACCTCCGCTTCCGCTCGGAGCTGTGAGT GGTGGCGTTCACGGAGGAGGGGTGTGAAGCAAGCCCGGCTGGAGCCTCAAGGATAAAATC TGGGAGTTTCCTGGCGGCTCAGCGGGGTAAAGATCATGTGTTGTCACTGCTGTGTGGCCT ATAAACTTCTGCATGCTGTTGCTGTGGCCCAAAAAGGTGAATAAATCAAATCTGATGTGT GTTCAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAAAAGCTTGTTCGGCTCAGAGATCAGTTGTGCAGTGACCACACCATACCCCACTCTA AGCCACAGGACACAGAGGTGTCACAAGGCCAGGATCCAGAGAGGGCAGGGGAGGAGAGTG AGCTCGCAGCATGGAGCCGGTCCAGGACACCTACCGCCCGCCACTGGAGTACGTGAAGGG GGTCCCTCTCATCAAGTACTTTGCAGAGGCACTGGGGCCACTGGAGAGTTTCCAAGCTTG GCCCGATGACGTGCTGATCAGCACCTATCCCAAATCTGGTACCACCTGGGTGAGCGAGAT CCTGGACCTAATCTACCAGGGTGGTGACCTGCAGAAGTGTCAGAGAGCCCCCATCTTTGT GCGGGTGCCCTTCCTTGAGTTCAAAATCCCCAGGTGTCCCACAGGTTTTGAGCTGCTGAA AGATACACCAGCCCCACGGCTCCTCAAGACACACTTGCCCCTGGCCCTGCTACCCCAGAC TCTGCTGGACCAGAAGGTCAAGGTGGTCTACGTCGCCCGCAACGCAAAGGACGTGGCCGT CTCCTATTACCACTTCTACCGTATGGCCAAAGTGCACCCTAACCCTGGCACGTGGGACAG CTTCCTGGAAGACTTCATGGCCGGAGAAGTGTCCTACGGGTCCTGGTACCAGCACGTGCA GGAGTGGTGGGAGCTGCGTCACACCCACCCTGTCCTCTATCTCTTCTACGAGGACATGAA GGAGAACCCCAAGAGGGAGATTCAGAAGATCCTGGAGTTTGTGGGGCGCTCGCTGCCAGA GGAGACGGTGGAGGACATCGTCCAGCACACGTCCTTCCAGGAGATGAAGAACAACGCCAT GACCAACTACCGCACCCTCCCCTCCGACCTCCTGGACCACAGCATCTCGGCCTTCATGAG GAAAGGCATCACTGGAGATTGGAAAAGCACCTTCACAGTGGCCCAGAACGAGCGCTTTGA GGCCGACTATGCTGAGAAGATGGCAGGCTGTAACCTCCGCTTCCGCTCGGAGCTGTGAGT GGTGGCGTTCACGGAGGAGGGGTGTGAAGCAAGCCCGGCTGGAGCCTCAAGGATAAAATC TGGGAGTTTCCTGGCGGCTCAGCGGGGTAAAGATCATGTGTTGTCACTGCTGTGTGGCCT ATAAACTTCTGCATGCTGTTGCTGTGGCCCAAAAAGGTGAATAAATCAAATCTGATGTGT GTTCAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 128-281, gnl|bosTau2|chr25 (25074687-25074534) | |
| 128-281, gnl|Hg17|chr16 (28514755-28514602) | |
| 128-281, gnl|Mm7|chr7 (122772140-122771999) | |
| 498-629, gnl|bosTau2|chr25 (25073607-25073476) | |
| 498-629, gnl|canFam2|chr6 (21190781-21190645) | |
| 498-629, gnl|danRer3|chr23 (42795860-42796000) | |
| 498-629, gnl|dasNov1|scaffold_87285 (2625-2483) | |
| 498-629, gnl|echTel1|scaffold_309115 (48998-48865) | |
| 498-629, gnl|fr1|chrUn (279651992-279651852) | |
| 498-629, gnl|galGal2|chr4 (52332212-52332347) | |
| 498-629, gnl|hg17|chr16 (28512265-28512407) | |
| 498-629, gnl|Hg17|chr16 (28512395-28512264) | |
| 498-629, gnl|loxAfr1|scaffold_1209 (12672-12913) | |
| 498-629, gnl|mm7|chr7 (122770830-122770972) | |
| 498-629, gnl|Mm7|chr7 (122770960-122770829) | |
| 498-629, gnl|monDom2|scaffold_5 (119567142-119567286) | |
| 498-629, gnl|oryCun1|scaffold_176737 (48577-48719) | |
| 498-629, gnl|panTro1|chr18 (29141312-29141170) | |
| 498-629, gnl|rheMac2|chr20 (28228198-28228056) | |
| 498-629, gnl|rn3|chr1 (185980435-185980577) | |
| 498-629, gnl|tetNig1|chr9 (6556924-6557055) | |
| 498-629, gnl|xenTro1|scaffold_1708 (82986-82846) | |
| 723-906, gnl|bosTau2|chr11 (31993071-31992888) | |
| 723-906, gnl|canFam2|chr10 (38736006-38735860) | |
| 723-906, gnl|dasNov1|scaffold_31217 (15243-15383) | |
| 723-906, gnl|echTel1|scaffold_286460 (1192-1338) | |
| 723-906, gnl|galGal2|chr1 (129284861-129285001) | |
| 723-906, gnl|hg17|chr2 (108339782-108339928) | |
| 723-906, gnl|Hg17|chr2 (108339797-108339980) | |
| 723-906, gnl|loxAfr1|scaffold_1067 (72504-72376) | |
| 723-906, gnl|mm7|chr17 (52119204-52119058) | |
| 723-906, gnl|Mm7|chr17 (52119187-52119004) | |
| 723-906, gnl|monDom2|scaffold_11 (27820407-27820553) | |
| 723-906, gnl|oryCun1|scaffold_115650 (2358-2213) | |
| 723-906, gnl|panTro1|chr12 (111430614-111430760) | |
| 723-906, gnl|rheMac2|chr13 (107982945-107983091) | |
| 723-906, gnl|rn3|chr9 (531256-531402) | |
| 723-906, gnl|tetNig1|chr2 (5450273-5450416) | |
| 723-906, gnl|xenTro1|scaffold_1833 (7478-7613) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 128-281, gnl|bosTau2|chr25 (25074687-25074534) | |
| 128-281, gnl|Hg17|chr16 (28514755-28514602) | |
| 128-281, gnl|Mm7|chr7 (122772140-122771999) | |
| 498-629, gnl|bosTau2|chr25 (25073607-25073476) | |
| 498-629, gnl|canFam2|chr6 (21190781-21190645) | |
| 498-629, gnl|danRer3|chr23 (42795860-42796000) | |
| 498-629, gnl|dasNov1|scaffold_87285 (2625-2483) | |
| 498-629, gnl|echTel1|scaffold_309115 (48998-48865) | |
| 498-629, gnl|fr1|chrUn (279651992-279651852) | |
| 498-629, gnl|galGal2|chr4 (52332212-52332347) | |
| 498-629, gnl|hg17|chr16 (28512265-28512407) | |
| 498-629, gnl|Hg17|chr16 (28512395-28512264) | |
| 498-629, gnl|loxAfr1|scaffold_1209 (12672-12913) | |
| 498-629, gnl|mm7|chr7 (122770830-122770972) | |
| 498-629, gnl|Mm7|chr7 (122770960-122770829) | |
| 498-629, gnl|monDom2|scaffold_5 (119567142-119567286) | |
| 498-629, gnl|oryCun1|scaffold_176737 (48577-48719) | |
| 498-629, gnl|panTro1|chr18 (29141312-29141170) | |
| 498-629, gnl|rheMac2|chr20 (28228198-28228056) | |
| 498-629, gnl|rn3|chr1 (185980435-185980577) | |
| 498-629, gnl|tetNig1|chr9 (6556924-6557055) | |
| 498-629, gnl|xenTro1|scaffold_1708 (82986-82846) | |
| 723-906, gnl|bosTau2|chr11 (31993071-31992888) | |
| 723-906, gnl|canFam2|chr10 (38736006-38735860) | |
| 723-906, gnl|dasNov1|scaffold_31217 (15243-15383) | |
| 723-906, gnl|echTel1|scaffold_286460 (1192-1338) | |
| 723-906, gnl|galGal2|chr1 (129284861-129285001) | |
| 723-906, gnl|hg17|chr2 (108339782-108339928) | |
| 723-906, gnl|Hg17|chr2 (108339797-108339980) | |
| 723-906, gnl|loxAfr1|scaffold_1067 (72504-72376) | |
| 723-906, gnl|mm7|chr17 (52119204-52119058) | |
| 723-906, gnl|Mm7|chr17 (52119187-52119004) | |
| 723-906, gnl|monDom2|scaffold_11 (27820407-27820553) | |
| 723-906, gnl|oryCun1|scaffold_115650 (2358-2213) | |
| 723-906, gnl|panTro1|chr12 (111430614-111430760) | |
| 723-906, gnl|rheMac2|chr13 (107982945-107983091) | |
| 723-906, gnl|rn3|chr9 (531256-531402) | |
| 723-906, gnl|tetNig1|chr2 (5450273-5450416) | |
| 723-906, gnl|xenTro1|scaffold_1833 (7478-7613) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| nms (0.641574) | |
| nlu (0.575043) | |
| cli (0.305623) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| cly (0.120642) | |
| jca (0.11396) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.641574) | |
| nlu (0.575043) | |
| cli (0.305623) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| cly (0.120642) | |
| jca (0.11396) |