Non-Coding RNA Search

Ss1.1-Tes1-TES01H010019.5

Sequence:


               
               CCCTCAGGAAGTGACGACAGAAGTGCCCTTGACCGGTGGGGCGGGCCGTGCTGTGCGTCG
CTTCGCTCTCGTTGCTGGGAGATGGCTCAGCGTCTTCTCCTGAGGAGGTTCCTGGCCTCT
GTAGTCTCCAGGAAGCCCTCTCATAGTCGGTGGGCACCCCTCGCTTCCAGAGCCCTGCAG
ACCCCACAGCTCAGCCTTAGTAACCTGACAGGAACACCCAGCCAAGCCCGGTCATTATAC
ACTACCCGGGTCTGTACAACAACCTTTAACATCCAGGATGGACCTGACTTTCAAGACCGA
GTTGTCAACAGTGAGACGCCAGTGGTTGTGGATTTCCATGCACAGTGGTGTGGTCCCTGC
AAGATCCTGGGGCCAAGGTTAGAGAAGGTGGTGGCCAAGCAGCATGGAAAGGTGGTGATG
GCCAAGGTGGATATCGACGACCACACAGACCTCGCCATCGAGTACGAGGTGTCGGCGGTG
CCCACTGTGCTGGCCATCAAAAATGGGGACGTGGTGGACAAGTTTGTGGGCATCAAGGAT
GAGGACCAGCTGGAGGCCTTTCTGAAGAAGCTGATTGGCTGACAAGCAGGGAAGAGTCCT
GACTGCCCCGGCCTGCCATGGTCCCGGGGGACCCCGTAGAACTCACAGCCCTTCTGTGCC
AGCCCTTCCCGCCTCGTCCCTCTGACTGGCCCCCATGGGCCCGTGCTTTGGAGACCAGGC
CTCCAAACACGGGACCCTCAAGCGCTCCCAGCCTGGCTAGCTGCCAGGCTGGCCGCCCCA
GGAGCCAGGACAGCCGTCTTCCCACCCGCTCTGCTCCCTCCAGGATGCTTGGACAGAGCC
GCGGGGCCAGCCTGTGGTACCACCTTGGTCCCATCTCCCTGATCCCTTCTGATCTGAACC
CTGGTGCCTGGCTCATCTGCCTCCTGCGTTTTTCTTTCCTGCTGCTGTTTTGTAAAAAAG
AAAGAAGGAAACTAGAAACCCGAACAAGTGAGAGTAACATACAGTTCTCTCATTTTGTGC
AGGTCCTTAATAAAGAACTTTTGTGATCCCTCTACCTCCCACTGTGAAGACCAGACCCTG
GGCCCTGAGCTAAATTACCCTCTGTCCACACCCCCTTTCCCGCCAGAGAGCCACCTTCCT
CCCAGGCACAAGGGCAGCGAACGTGCGTCGCGCTGGGGGCATCCTGCACACCTTTGACTC
TGGAAGGTTCGAGACACTACCTTCCCTCCCCATTAGCCAGCCCTTTCTCTGAGTAGCAGG
CTTCACTGTGAAAAGACTGGACCAATAAAACGAGGGTGTGCACTGTCNAAAGGGGGGGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCAGGAAGTGACGACAGAAGTGCCCTTGACCGGTGGGGCGGGCCGTGCTGTGCGTCG
CTTCGCTCTCGTTGCTGGGAGATGGCTCAGCGTCTTCTCCTGAGGAGGTTCCTGGCCTCT
GTAGTCTCCAGGAAGCCCTCTCATAGTCGGTGGGCACCCCTCGCTTCCAGAGCCCTGCAG
ACCCCACAGCTCAGCCTTAGTAACCTGACAGGAACACCCAGCCAAGCCCGGTCATTATAC
ACTACCCGGGTCTGTACAACAACCTTTAACATCCAGGATGGACCTGACTTTCAAGACCGA
GTTGTCAACAGTGAGACGCCAGTGGTTGTGGATTTCCATGCACAGTGGTGTGGTCCCTGC
AAGATCCTGGGGCCAAGGTTAGAGAAGGTGGTGGCCAAGCAGCATGGAAAGGTGGTGATG
GCCAAGGTGGATATCGACGACCACACAGACCTCGCCATCGAGTACGAGGTGTCGGCGGTG
CCCACTGTGCTGGCCATCAAAAATGGGGACGTGGTGGACAAGTTTGTGGGCATCAAGGAT
GAGGACCAGCTGGAGGCCTTTCTGAAGAAGCTGATTGGCTGACAAGCAGGGAAGAGTCCT
GACTGCCCCGGCCTGCCATGGTCCCGGGGGACCCCGTAGAACTCACAGCCCTTCTGTGCC
AGCCCTTCCCGCCTCGTCCCTCTGACTGGCCCCCATGGGCCCGTGCTTTGGAGACCAGGC
CTCCAAACACGGGACCCTCAAGCGCTCCCAGCCTGGCTAGCTGCCAGGCTGGCCGCCCCA
GGAGCCAGGACAGCCGTCTTCCCACCCGCTCTGCTCCCTCCAGGATGCTTGGACAGAGCC
GCGGGGCCAGCCTGTGGTACCACCTTGGTCCCATCTCCCTGATCCCTTCTGATCTGAACC
CTGGTGCCTGGCTCATCTGCCTCCTGCGTTTTTCTTTCCTGCTGCTGTTTTGTAAAAAAG
AAAGAAGGAAACTAGAAACCCGAACAAGTGAGAGTAACATACAGTTCTCTCATTTTGTGC
AGGTCCTTAATAAAGAACTTTTGTGATCCCTCTACCTCCCACTGTGAAGACCAGACCCTG
GGCCCTGAGCTAAATTACCCTCTGTCCACACCCCCTTTCCCGCCAGAGAGCCACCTTCCT
CCCAGGCACAAGGGCAGCGAACGTGCGTCGCGCTGGGGGCATCCTGCACACCTTTGACTC
TGGAAGGTTCGAGACACTACCTTCCCTCCCCATTAGCCAGCCCTTTCTCTGAGTAGCAGG
CTTCACTGTGAAAAGACTGGACCAATAAAACGAGGGTGTGCACTGTCNAAAGGGGGGGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|56202618|emb|CAI19226.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56202618|emb|CAI19226.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               32-191, - strand, RNAz p=0.961169
               

               
               231-348, - strand, RNAz p=0.514942

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               32-191, - strand, RNAz p=0.961169
               

               
               231-348, - strand, RNAz p=0.514942

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               32-732, gnl|bosTau2|chr3 (77325268-77324559)
               

               
               32-732, gnl|Hg17|chr1 (84263399-84264047)
               

               
               32-732, gnl|Mm7|chr15 (78010918-77998539)
               


               
               822-1311, gnl|bosTau2|chr3 (77324443-77323945)
               

               
               822-1311, gnl|Hg17|chr1 (84264174-84264676)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-732, gnl|bosTau2|chr3 (77325268-77324559)
               

               
               32-732, gnl|Hg17|chr1 (84263399-84264047)
               

               
               32-732, gnl|Mm7|chr15 (78010918-77998539)
               


               
               822-1311, gnl|bosTau2|chr3 (77324443-77323945)
               

               
               822-1311, gnl|Hg17|chr1 (84264174-84264676)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               cli (0.611247)
               

               
               mas (0.42061)
               

               
               amn (0.417711)
               

               
               ldo (0.291008)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.611247)
               

               
               mas (0.42061)
               

               
               amn (0.417711)
               

               
               ldo (0.291008)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	32-191, - strand, RNAz p=0.961169
	231-348, - strand, RNAz p=0.514942

	32-732, gnl\|bosTau2\|chr3 (77325268-77324559)
	32-732, gnl\|Hg17\|chr1 (84263399-84264047)
	32-732, gnl\|Mm7\|chr15 (78010918-77998539)

	822-1311, gnl\|bosTau2\|chr3 (77324443-77323945)
	822-1311, gnl\|Hg17\|chr1 (84264174-84264676)

	cli (0.611247)
	mas (0.42061)
	amn (0.417711)
	ldo (0.291008)
	lnt (0.284616)
	fce (0.271592)
	cov (0.264306)
	eep (0.245128)
	fli (0.202881)
	jej (0.197844)
	nlu (0.191681)
	fty (0.17584)
	mcp (0.170648)
	eye (0.170503)
	cag (0.151194)
	hyp (0.142837)
	pla (0.133672)
	ese (0.126502)
	cly (0.120642)
	eru (0.120048)
	ecc (0.115035)
	nbm (0.0993246)