Ss1.1-Tes1-TES01H010041.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTCACAGTCAGAGGTACAGTTTATTGAGCACCCAGATTGGAGGGCAGGC CGGCCCGGGGAGGGCCTCAGAAGTGCAGCACCTTGGCACCGTCGGCTGCCTGGGAGAGGA AGAAGGTGGCGGCACCGCTGTACTGCTCCTGGATGTGCTGCATCACGAGGGAAGCGGCAG AGGCCTCCAGCAAGGTCACCGTGCAGCCACCAAAGCCACCACCTGTCATGCGGCTGCCAT AAACCCCGGGCGCAGAGAGGGCGGCCTCCACCAGCTGATCCAGCTCAGGACAGCTCACCT CGTAGTCGTCCCTGAGCGAGTGGTGACTCTCCACCATGAGGCGGCCAAAGGCTCTGTAGT CGCCACGGCTCAGGGCGGCCGCCGCCTGGGCTGTGCGCTGGATCTCACCCACGACGTGTC GCGCCCGCCGGAAGGCCTCCCCACTCACCAGCTCCCTGCCAGCTTCTAGCTCCTCCCGCT GCACCTCCCGAAGGCTCTCCTTGCCCAGCGCCCGGGCCACTTCCTCACACTGCCGCCGCC GCAGGGGGTACTCGCTGGAGCCCAGTGAATGGCGGACATTGGAGTTGGTGATGAGTACTG CCAGCTTGGGGTCCGACAGCGGCACGAGGCTTGTCTCCAGGGACCTGCAGTCAATGAGCA GCGCGTGGCCTTTCTGCCCCAGCAGTGCGATGAGCTGGTCCATGATGCCACAGGGCACCC CTGCGAAGCTGTGCTCGGCCCGCTGACACACCTGGGCCCGGGCAGCTATTGTCCCCGAGT CTGGGCAGAGCTGCTGCAGGAAGGTATACGTGGCCACTTCCAGGGATGCTGAGCTGGACA GCCCACCCCCTAGTGGCACTGAGCTGACCACCACTGCACTGAAGCCAGGGAGGGGGGCAG CTGGATAGTGCTGGATCACTCCCTTCACATAGTTGGCCCAGTGCGGGGTCCCAGGCTCCA GCGGCCGCTTGTCTGTGGGCAGGGGAAACTGCAGCCGCCGGGGCTCATCGGCATCCTCAG AGGTGGTAAGGAGGGAGACAAGCCCATCCGTCCGGGGGCTGCCCACGAGCACAGTCACAA GCTCCAGAGCCATGGGCAGCACCAGGCCCTGGTTGTAGTCCGTGTGCTCCCCAATGAGGT TGACGCGGCCCGGCGCCGACACGGCCAGCTCGGGCTCGGCCCCGAACTCCTCCAGGAAGG CTCTCCGGGCCCTGGCCAGCAGCTCCTCGGCCCGGGGCTGTTCCGAAGCGGCCATGACTC TCGCCCTGCAGCTCTGTCCGGCGCAGTCGGGTCGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTCACAGTCAGAGGTACAGTTTATTGAGCACCCAGATTGGAGGGCAGGC CGGCCCGGGGAGGGCCTCAGAAGTGCAGCACCTTGGCACCGTCGGCTGCCTGGGAGAGGA AGAAGGTGGCGGCACCGCTGTACTGCTCCTGGATGTGCTGCATCACGAGGGAAGCGGCAG AGGCCTCCAGCAAGGTCACCGTGCAGCCACCAAAGCCACCACCTGTCATGCGGCTGCCAT AAACCCCGGGCGCAGAGAGGGCGGCCTCCACCAGCTGATCCAGCTCAGGACAGCTCACCT CGTAGTCGTCCCTGAGCGAGTGGTGACTCTCCACCATGAGGCGGCCAAAGGCTCTGTAGT CGCCACGGCTCAGGGCGGCCGCCGCCTGGGCTGTGCGCTGGATCTCACCCACGACGTGTC GCGCCCGCCGGAAGGCCTCCCCACTCACCAGCTCCCTGCCAGCTTCTAGCTCCTCCCGCT GCACCTCCCGAAGGCTCTCCTTGCCCAGCGCCCGGGCCACTTCCTCACACTGCCGCCGCC GCAGGGGGTACTCGCTGGAGCCCAGTGAATGGCGGACATTGGAGTTGGTGATGAGTACTG CCAGCTTGGGGTCCGACAGCGGCACGAGGCTTGTCTCCAGGGACCTGCAGTCAATGAGCA GCGCGTGGCCTTTCTGCCCCAGCAGTGCGATGAGCTGGTCCATGATGCCACAGGGCACCC CTGCGAAGCTGTGCTCGGCCCGCTGACACACCTGGGCCCGGGCAGCTATTGTCCCCGAGT CTGGGCAGAGCTGCTGCAGGAAGGTATACGTGGCCACTTCCAGGGATGCTGAGCTGGACA GCCCACCCCCTAGTGGCACTGAGCTGACCACCACTGCACTGAAGCCAGGGAGGGGGGCAG CTGGATAGTGCTGGATCACTCCCTTCACATAGTTGGCCCAGTGCGGGGTCCCAGGCTCCA GCGGCCGCTTGTCTGTGGGCAGGGGAAACTGCAGCCGCCGGGGCTCATCGGCATCCTCAG AGGTGGTAAGGAGGGAGACAAGCCCATCCGTCCGGGGGCTGCCCACGAGCACAGTCACAA GCTCCAGAGCCATGGGCAGCACCAGGCCCTGGTTGTAGTCCGTGTGCTCCCCAATGAGGT TGACGCGGCCCGGCGCCGACACGGCCAGCTCGGGCTCGGCCCCGAACTCCTCCAGGAAGG CTCTCCGGGCCCTGGCCAGCAGCTCCTCGGCCCGGGGCTGTTCCGAAGCGGCCATGACTC TCGCCCTGCAGCTCTGTCCGGCGCAGTCGGGTCGGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 148-314, gnl|bosTau2|chr19 (47351281-47351115) | |
| 148-314, gnl|Hg17|chr17 (71265885-71266051) | |
| 148-314, gnl|Mm7|chr11 (116117847-116118013) | |
| 460-647, gnl|bosTau2|chr19 (47346593-47346406) | |
| 460-647, gnl|Hg17|chr17 (71270386-71270564) | |
| 460-647, gnl|Mm7|chr11 (116118972-116119150) | |
| 781-903, gnl|bosTau2|chr19 (47345968-47345846) | |
| 781-903, gnl|canFam2|chr9 (7818142-7817994) | |
| 781-903, gnl|danRer3|chr12 (31237800-31237945) | |
| 781-903, gnl|fr1|chrUn (145783251-145783127) | |
| 781-903, gnl|galGal2|chr18 (4520637-4520495) | |
| 781-903, gnl|hg17|chr17 (71270988-71271141) | |
| 781-903, gnl|Hg17|chr17 (71270996-71271118) | |
| 781-903, gnl|loxAfr1|scaffold_211759 (695-846) | |
| 781-903, gnl|mm7|chr11 (116119600-116119744) | |
| 781-903, gnl|Mm7|chr11 (116119608-116119730) | |
| 781-903, gnl|monDom2|scaffold_18 (33499738-33499894) | |
| 781-903, gnl|oryCun1|scaffold_162483 (25677-25528) | |
| 781-903, gnl|panTro1|chr19 (74628403-74628556) | |
| 781-903, gnl|rheMac2|chr16 (71076911-71077064) | |
| 781-903, gnl|rn3|chr10 (106133292-106133424) | |
| 781-903, gnl|tetNig1|chrUn_random (41756630-41756788) | |
| 781-903, gnl|xenTro1|scaffold_632 (552710-552839) | |
| 1090-1296, gnl|bosTau2|chr19 (47344497-47344291) | |
| 1090-1296, gnl|canFam2|chr9 (7816527-7816380) | |
| 1090-1296, gnl|danRer3|chr12 (31242803-31242949) | |
| 1090-1296, gnl|echTel1|scaffold_112329 (629-482) | |
| 1090-1296, gnl|fr1|chrUn (145782269-145782121) | |
| 1090-1296, gnl|galGal2|chr18 (4519931-4519776) | |
| 1090-1296, gnl|hg17|chr17 (71272644-71272791) | |
| 1090-1296, gnl|Hg17|chr17 (71272647-71272861) | |
| 1090-1296, gnl|mm7|chr11 (116121555-116121702) | |
| 1090-1296, gnl|Mm7|chr11 (116121558-116121754) | |
| 1090-1296, gnl|monDom2|scaffold_18 (33501564-33501711) | |
| 1090-1296, gnl|oryCun1|scaffold_162483 (24218-24071) | |
| 1090-1296, gnl|panTro1|chr19 (74630062-74630209) | |
| 1090-1296, gnl|rheMac2|chr16 (71078566-71078713) | |
| 1090-1296, gnl|rn3|chr10 (106135260-106135407) | |
| 1090-1296, gnl|tetNig1|chrUn_random (41757379-41757524) | |
| 1090-1296, gnl|xenTro1|scaffold_632 (554551-554701) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 148-314, gnl|bosTau2|chr19 (47351281-47351115) | |
| 148-314, gnl|Hg17|chr17 (71265885-71266051) | |
| 148-314, gnl|Mm7|chr11 (116117847-116118013) | |
| 460-647, gnl|bosTau2|chr19 (47346593-47346406) | |
| 460-647, gnl|Hg17|chr17 (71270386-71270564) | |
| 460-647, gnl|Mm7|chr11 (116118972-116119150) | |
| 781-903, gnl|bosTau2|chr19 (47345968-47345846) | |
| 781-903, gnl|canFam2|chr9 (7818142-7817994) | |
| 781-903, gnl|danRer3|chr12 (31237800-31237945) | |
| 781-903, gnl|fr1|chrUn (145783251-145783127) | |
| 781-903, gnl|galGal2|chr18 (4520637-4520495) | |
| 781-903, gnl|hg17|chr17 (71270988-71271141) | |
| 781-903, gnl|Hg17|chr17 (71270996-71271118) | |
| 781-903, gnl|loxAfr1|scaffold_211759 (695-846) | |
| 781-903, gnl|mm7|chr11 (116119600-116119744) | |
| 781-903, gnl|Mm7|chr11 (116119608-116119730) | |
| 781-903, gnl|monDom2|scaffold_18 (33499738-33499894) | |
| 781-903, gnl|oryCun1|scaffold_162483 (25677-25528) | |
| 781-903, gnl|panTro1|chr19 (74628403-74628556) | |
| 781-903, gnl|rheMac2|chr16 (71076911-71077064) | |
| 781-903, gnl|rn3|chr10 (106133292-106133424) | |
| 781-903, gnl|tetNig1|chrUn_random (41756630-41756788) | |
| 781-903, gnl|xenTro1|scaffold_632 (552710-552839) | |
| 1090-1296, gnl|bosTau2|chr19 (47344497-47344291) | |
| 1090-1296, gnl|canFam2|chr9 (7816527-7816380) | |
| 1090-1296, gnl|danRer3|chr12 (31242803-31242949) | |
| 1090-1296, gnl|echTel1|scaffold_112329 (629-482) | |
| 1090-1296, gnl|fr1|chrUn (145782269-145782121) | |
| 1090-1296, gnl|galGal2|chr18 (4519931-4519776) | |
| 1090-1296, gnl|hg17|chr17 (71272644-71272791) | |
| 1090-1296, gnl|Hg17|chr17 (71272647-71272861) | |
| 1090-1296, gnl|mm7|chr11 (116121555-116121702) | |
| 1090-1296, gnl|Mm7|chr11 (116121558-116121754) | |
| 1090-1296, gnl|monDom2|scaffold_18 (33501564-33501711) | |
| 1090-1296, gnl|oryCun1|scaffold_162483 (24218-24071) | |
| 1090-1296, gnl|panTro1|chr19 (74630062-74630209) | |
| 1090-1296, gnl|rheMac2|chr16 (71078566-71078713) | |
| 1090-1296, gnl|rn3|chr10 (106135260-106135407) | |
| 1090-1296, gnl|tetNig1|chrUn_random (41757379-41757524) | |
| 1090-1296, gnl|xenTro1|scaffold_632 (554551-554701) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| elu (0.385356) | |
| fli (0.202881) | |
| jej (0.197844) | |
| col (0.195008) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| eru (0.120048) | |
| jca (0.11396) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| fli (0.202881) | |
| jej (0.197844) | |
| col (0.195008) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| eru (0.120048) | |
| jca (0.11396) |