Non-Coding RNA Search

Ss1.1-Tes1-TES01H010046.5

Sequence:


               
               TGGAAAGGGGTTGGCGCGGGACTGTGGATCTGTGCTGGATGCAGGCGCGGGTCATGTGAC
CGGAAGGGCTCCTGACGGACGCCGTCCCTGCTCGGCGCGGCCTGAGCGCCCGGCCCTACC
CCCGCCATGGGGTGCTGCTACAGCAGCGAGAACGAGGACTCGGACCAGGACCGAGAGGAG
CGGAAGCTGCTGCTGGACCCTAGCAGCCCCCCAACCAAAGCCCTCAATGGAGCCGAGCCC
AACTACCACAGCCTGCCTTCTGCTCGCACAGATGAGCAGGCGCTGCTCTCCTCCATCCTC
GCCAAGACAGCCAGCAACATCATCGACGTGTCTGCCGCCGACTCCCAGGGCATGGAGCAG
CACGAGTACATGGACCGGGCGAGGCAGTACAGCACCCGCCTGGCCGTGCTGAGCAGCAGC
CTGACCCATTGGAAGAAGCTGCCGCCGCTGCCGTCCCTCACCAGCCAGCCCCACCAAGTG
CTGGCCAGCGAGCCCATCCCCTTCTCCGACTTGCAGCAGGTCTCCAGGATAGCTGCTTAT
GCCTACAGTGCACTTTCTCAGATCCGCGTGGACGCAAAAGAGGAGCTGGTTGTACAGTTT
GGGATCCCGTGAAGAGGGGGCCTCCCCCCTGCCGCTGCACAGCTCTCCTCTCTTCACCCT
GCCTCCACCCCGCCTCCCCGGCCCCCAGCCTCACTGCGGCTTACACAGAACCCTAACCTG
CGACGAATCCCGGCACGTGGAGGAGGAGGAGGAGGAGAGCAAGGCTGGAAGCCTGAGCAA
GTGAGGATGGAGCGAGGGAGGGTGGCAGCTCCTGGGACTGGCCCTCGAAGCCCTGGCCAG
GGCGGGGTGGGGGGCACAGGGACAGGGCCTTCACCGTCGCTGGGAAGGTGGAGGTGCCAC
GGCGACAGCGGTCACAGGCCCCTGACAGGCCCCCTGCCCACCCTTTCTTGCCTCCCTCCT
GCCCCCTCTCCCGGACTTGGTGCTCACGTGCACCTCAAGGGCATGTGACCAGGGTCTGGA
CGAGCTTGAATTTGAATGAATTGAGTTTGTATTTCTAGCACCCTGGGTTTTTACATGTTT
GGGGTTTTTCGATTTTGTTTTGGTTTGTCACCCTCGATAAAGGAAGTGTATCCACCTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAAAGGGGTTGGCGCGGGACTGTGGATCTGTGCTGGATGCAGGCGCGGGTCATGTGAC
CGGAAGGGCTCCTGACGGACGCCGTCCCTGCTCGGCGCGGCCTGAGCGCCCGGCCCTACC
CCCGCCATGGGGTGCTGCTACAGCAGCGAGAACGAGGACTCGGACCAGGACCGAGAGGAG
CGGAAGCTGCTGCTGGACCCTAGCAGCCCCCCAACCAAAGCCCTCAATGGAGCCGAGCCC
AACTACCACAGCCTGCCTTCTGCTCGCACAGATGAGCAGGCGCTGCTCTCCTCCATCCTC
GCCAAGACAGCCAGCAACATCATCGACGTGTCTGCCGCCGACTCCCAGGGCATGGAGCAG
CACGAGTACATGGACCGGGCGAGGCAGTACAGCACCCGCCTGGCCGTGCTGAGCAGCAGC
CTGACCCATTGGAAGAAGCTGCCGCCGCTGCCGTCCCTCACCAGCCAGCCCCACCAAGTG
CTGGCCAGCGAGCCCATCCCCTTCTCCGACTTGCAGCAGGTCTCCAGGATAGCTGCTTAT
GCCTACAGTGCACTTTCTCAGATCCGCGTGGACGCAAAAGAGGAGCTGGTTGTACAGTTT
GGGATCCCGTGAAGAGGGGGCCTCCCCCCTGCCGCTGCACAGCTCTCCTCTCTTCACCCT
GCCTCCACCCCGCCTCCCCGGCCCCCAGCCTCACTGCGGCTTACACAGAACCCTAACCTG
CGACGAATCCCGGCACGTGGAGGAGGAGGAGGAGGAGAGCAAGGCTGGAAGCCTGAGCAA
GTGAGGATGGAGCGAGGGAGGGTGGCAGCTCCTGGGACTGGCCCTCGAAGCCCTGGCCAG
GGCGGGGTGGGGGGCACAGGGACAGGGCCTTCACCGTCGCTGGGAAGGTGGAGGTGCCAC
GGCGACAGCGGTCACAGGCCCCTGACAGGCCCCCTGCCCACCCTTTCTTGCCTCCCTCCT
GCCCCCTCTCCCGGACTTGGTGCTCACGTGCACCTCAAGGGCATGTGACCAGGGTCTGGA
CGAGCTTGAATTTGAATGAATTGAGTTTGTATTTCTAGCACCCTGGGTTTTTACATGTTT
GGGGTTTTTCGATTTTGTTTTGGTTTGTCACCCTCGATAAAGGAAGTGTATCCACCTGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55636603|ref|XP_508619.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55636603|ref|XP_508619.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               596-713, - strand, RNAz p=0.985097
               

               
               794-1122, + strand, RNAz p=0.994106

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               596-713, - strand, RNAz p=0.985097
               

               
               794-1122, + strand, RNAz p=0.994106

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_017907, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017907, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               167-314, gnl|bosTau2|chr15 (29949280-29949427)
               

               
               167-314, gnl|canFam2|chr21 (28989252-28989080)
               

               
               167-314, gnl|danRer3|chrNA (234798207-234798344)
               

               
               167-314, gnl|echTel1|scaffold_313942 (70399-70574)
               

               
               167-314, gnl|fr1|chrUn (265386866-265386710)
               

               
               167-314, gnl|hg17|chr11 (71487801-71487973)
               

               
               167-314, gnl|Hg17|chr11 (71487952-71487805)
               

               
               167-314, gnl|loxAfr1|scaffold_12984 (26248-26420)
               

               
               167-314, gnl|mm7|chr7 (97956051-97955879)
               

               
               167-314, gnl|Mm7|chr7 (97955898-97956045)
               

               
               167-314, gnl|monDom2|scaffold_74 (6454279-6454113)
               

               
               167-314, gnl|oryCun1|scaffold_211552 (87132-86963)
               

               
               167-314, gnl|panTro1|chr9 (72756118-72756290)
               

               
               167-314, gnl|rheMac2|chr14 (70140692-70140864)
               

               
               167-314, gnl|rn3|chr1 (159450231-159450062)
               

               
               167-314, gnl|tetNig1|chrUn_random (89895697-89895853)
               

               
               167-314, gnl|xenTro1|scaffold_2049 (5803-5978)
               


               
               517-1138, gnl|bosTau2|chr15 (29950544-29951176)
               

               
               517-1138, gnl|Hg17|chr11 (71486611-71485986)
               

               
               517-1138, gnl|Mm7|chr7 (97957506-97958125)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               167-314, gnl|bosTau2|chr15 (29949280-29949427)
               

               
               167-314, gnl|canFam2|chr21 (28989252-28989080)
               

               
               167-314, gnl|danRer3|chrNA (234798207-234798344)
               

               
               167-314, gnl|echTel1|scaffold_313942 (70399-70574)
               

               
               167-314, gnl|fr1|chrUn (265386866-265386710)
               

               
               167-314, gnl|hg17|chr11 (71487801-71487973)
               

               
               167-314, gnl|Hg17|chr11 (71487952-71487805)
               

               
               167-314, gnl|loxAfr1|scaffold_12984 (26248-26420)
               

               
               167-314, gnl|mm7|chr7 (97956051-97955879)
               

               
               167-314, gnl|Mm7|chr7 (97955898-97956045)
               

               
               167-314, gnl|monDom2|scaffold_74 (6454279-6454113)
               

               
               167-314, gnl|oryCun1|scaffold_211552 (87132-86963)
               

               
               167-314, gnl|panTro1|chr9 (72756118-72756290)
               

               
               167-314, gnl|rheMac2|chr14 (70140692-70140864)
               

               
               167-314, gnl|rn3|chr1 (159450231-159450062)
               

               
               167-314, gnl|tetNig1|chrUn_random (89895697-89895853)
               

               
               167-314, gnl|xenTro1|scaffold_2049 (5803-5978)
               


               
               517-1138, gnl|bosTau2|chr15 (29950544-29951176)
               

               
               517-1138, gnl|Hg17|chr11 (71486611-71485986)
               

               
               517-1138, gnl|Mm7|chr7 (97957506-97958125)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               nlu (0.383362)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.383362)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	596-713, - strand, RNAz p=0.985097
	794-1122, + strand, RNAz p=0.994106

	167-314, gnl\|bosTau2\|chr15 (29949280-29949427)
	167-314, gnl\|canFam2\|chr21 (28989252-28989080)
	167-314, gnl\|danRer3\|chrNA (234798207-234798344)
	167-314, gnl\|echTel1\|scaffold_313942 (70399-70574)
	167-314, gnl\|fr1\|chrUn (265386866-265386710)
	167-314, gnl\|hg17\|chr11 (71487801-71487973)
	167-314, gnl\|Hg17\|chr11 (71487952-71487805)
	167-314, gnl\|loxAfr1\|scaffold_12984 (26248-26420)
	167-314, gnl\|mm7\|chr7 (97956051-97955879)
	167-314, gnl\|Mm7\|chr7 (97955898-97956045)
	167-314, gnl\|monDom2\|scaffold_74 (6454279-6454113)
	167-314, gnl\|oryCun1\|scaffold_211552 (87132-86963)
	167-314, gnl\|panTro1\|chr9 (72756118-72756290)
	167-314, gnl\|rheMac2\|chr14 (70140692-70140864)
	167-314, gnl\|rn3\|chr1 (159450231-159450062)
	167-314, gnl\|tetNig1\|chrUn_random (89895697-89895853)
	167-314, gnl\|xenTro1\|scaffold_2049 (5803-5978)

	517-1138, gnl\|bosTau2\|chr15 (29950544-29951176)
	517-1138, gnl\|Hg17\|chr11 (71486611-71485986)
	517-1138, gnl\|Mm7\|chr7 (97957506-97958125)

	nlu (0.383362)
	fty (0.17584)
	cli (0.152812)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	cst (0.140036)
	nca (0.136874)
	pla (0.133672)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	ebs (0.118301)
	jca (0.11396)
	jej (0.0989218)