Ss1.1-Tes1-TES01H010047.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGTGGATTGTGGGAGAAGATGGCGGCGGCCGTTCACCCCCGGGTTGTCCGGGCCGTGCC AATGTCACGTTCTTGTCTTGCTGCAGTAGCCACATCAGTGTCTTATGGCCCGCCCCAGCG CCAGCTTCATCACGCGCTCATCCCTCATGGGAAAGGTGGGCGTTCCTCAGTCAGTGGGAT TGTGGCCACTGTGTTTGGAGCAACAGGATTCCTGGGCCGCTATGTTGTCAACCACCTTGG TCGCATGGGGTCACAGGTGATCGTACCCTACCGGTGTGAGCCGTATGATACCATGCATCT CCGGCCCATGGGTGACCTGGGCCAGATTATCTTTATGGAATGGAACGGGAAAGACAAGGA CTCTATCCGGAAGGTGGTGGAACACAGCAATGTGGTCATCAACCTTGTTGGGCGAGAATG GGAGACCAAAAATTTTGATTTTGAGGATGTTTTCGTAAAGATTCCCCACGCAATTGCTCA AGTGTCCAAGGAAGCCGGAGTTGAAAAACTTATTCACATTTCTCACCTGAATGCTGATAT TAAAAGCCCCTCTAGGTATCTGAGAAGTAAGGCCGTTGGGGAGAAAGAGGTGAGAGCTGC CTTTCCAGAAGCCACTATCATAAAGCCATCGGACATCTTTGGAAGAGAGGACAGATTCCT CAATTATTTTGCAAGTATGCGCTGGTTTGGTGGTGTCCCTCTTATTTCCTTGGGCAAGGA GACAGTGAAACAACCAGTATATATTGTGGATGTATCCAAAGGAATTATTAATGCAATTAA GGATCCAGATGCCAAAGGGAAAACGTTTGCCTTTGTTGGGCCCAATCGGTACATTCTCTT TGACCTGGTGCAGTATATCTTTGCCGTGGCCTACAGACCCTTCCTCCCTTACCCTTTGCC ACATTTTGCCTATCGATGGGTAGGTCGACTCTTTGAAGTGAGTCCGTTCGAGCCCTGGAC CACGAGGGATAAGGTGGAACGGGTTCACATGTCAGACATGACACTGCCTCACCTGCCCGG CTTGGAAGACCTTGGCATTCAGGCCACACCCCTGGAGCTCAAGGCCATCGAGGTGCTGCG GCGTCACCGCACATACCGCTGGCTGACTTCAGAGATGGAAGATGTGAAACCAGCCAAGAC AGTTAATATTTAGAGGCCCCTGAGCTGCCTGTGGTTTTGGTGTCATTTGGGTCACCTGGC TAGTGACCAAGCCACCTATGTTAGAGCATTCTGTACATATTGAGAAGAGCCCTCTATTAA AACATCGGAGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGTGGATTGTGGGAGAAGATGGCGGCGGCCGTTCACCCCCGGGTTGTCCGGGCCGTGCC AATGTCACGTTCTTGTCTTGCTGCAGTAGCCACATCAGTGTCTTATGGCCCGCCCCAGCG CCAGCTTCATCACGCGCTCATCCCTCATGGGAAAGGTGGGCGTTCCTCAGTCAGTGGGAT TGTGGCCACTGTGTTTGGAGCAACAGGATTCCTGGGCCGCTATGTTGTCAACCACCTTGG TCGCATGGGGTCACAGGTGATCGTACCCTACCGGTGTGAGCCGTATGATACCATGCATCT CCGGCCCATGGGTGACCTGGGCCAGATTATCTTTATGGAATGGAACGGGAAAGACAAGGA CTCTATCCGGAAGGTGGTGGAACACAGCAATGTGGTCATCAACCTTGTTGGGCGAGAATG GGAGACCAAAAATTTTGATTTTGAGGATGTTTTCGTAAAGATTCCCCACGCAATTGCTCA AGTGTCCAAGGAAGCCGGAGTTGAAAAACTTATTCACATTTCTCACCTGAATGCTGATAT TAAAAGCCCCTCTAGGTATCTGAGAAGTAAGGCCGTTGGGGAGAAAGAGGTGAGAGCTGC CTTTCCAGAAGCCACTATCATAAAGCCATCGGACATCTTTGGAAGAGAGGACAGATTCCT CAATTATTTTGCAAGTATGCGCTGGTTTGGTGGTGTCCCTCTTATTTCCTTGGGCAAGGA GACAGTGAAACAACCAGTATATATTGTGGATGTATCCAAAGGAATTATTAATGCAATTAA GGATCCAGATGCCAAAGGGAAAACGTTTGCCTTTGTTGGGCCCAATCGGTACATTCTCTT TGACCTGGTGCAGTATATCTTTGCCGTGGCCTACAGACCCTTCCTCCCTTACCCTTTGCC ACATTTTGCCTATCGATGGGTAGGTCGACTCTTTGAAGTGAGTCCGTTCGAGCCCTGGAC CACGAGGGATAAGGTGGAACGGGTTCACATGTCAGACATGACACTGCCTCACCTGCCCGG CTTGGAAGACCTTGGCATTCAGGCCACACCCCTGGAGCTCAAGGCCATCGAGGTGCTGCG GCGTCACCGCACATACCGCTGGCTGACTTCAGAGATGGAAGATGTGAAACCAGCCAAGAC AGTTAATATTTAGAGGCCCCTGAGCTGCCTGTGGTTTTGGTGTCATTTGGGTCACCTGGC TAGTGACCAAGCCACCTATGTTAGAGCATTCTGTACATATTGAGAAGAGCCCTCTATTAA AACATCGGAGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 69-241, gnl|bosTau2|chr5 (63768833-63769005) | |
| 69-241, gnl|canFam2|chr27 (43240599-43240716) | |
| 69-241, gnl|danRer3|chrUn (9217441-9217558) | |
| 69-241, gnl|dasNov1|scaffold_43436 (7696-7579) | |
| 69-241, gnl|echTel1|scaffold_206777 (3060-3181) | |
| 69-241, gnl|fr1|chrUn (243917788-243917905) | |
| 69-241, gnl|Hg17|chr12 (4633719-4633891) | |
| 69-241, gnl|hg17|chr22 (34618732-34618850) | |
| 69-241, gnl|mm7|chr6 (126869847-126869964) | |
| 69-241, gnl|Mm7|chr6 (126870017-126869845) | |
| 69-241, gnl|monDom2|scaffold_1 (157132608-157132491) | |
| 69-241, gnl|oryCun1|scaffold_214747 (28434-28551) | |
| 69-241, gnl|panTro1|chr23 (34738344-34738462) | |
| 69-241, gnl|rheMac2|chr10 (79826154-79826267) | |
| 69-241, gnl|rn3|chr4 (163478394-163478511) | |
| 69-241, gnl|tetNig1|chr13 (1600773-1600656) | |
| 426-572, gnl|bosTau2|chr5 (63772960-63773106) | |
| 426-572, gnl|canFam2|chr27 (43235722-43235865) | |
| 426-572, gnl|canFam2|chr27 (43235902-43235719) | |
| 426-572, gnl|danRer3|chrUn (9217109-9217252) | |
| 426-572, gnl|danRer3|chrUn (177998855-177999046) | |
| 426-572, gnl|dasNov1|scaffold_64346 (8841-8982) | |
| 426-572, gnl|dasNov1|scaffold_64346 (9024-8816) | |
| 426-572, gnl|echTel1|scaffold_206777 (2742-2883) | |
| 426-572, gnl|echTel1|scaffold_285266 (87202-87002) | |
| 426-572, gnl|fr1|chrUn (243916803-243916944) | |
| 426-572, gnl|fr1|chrUn (243916969-243916800) | |
| 426-572, gnl|hg17|chr12 (4638426-4638629) | |
| 426-572, gnl|Hg17|chr12 (4638459-4638605) | |
| 426-572, gnl|hg17|chr22 (34618400-34618543) | |
| 426-572, gnl|loxAfr1|scaffold_198616 (36-179) | |
| 426-572, gnl|loxAfr1|scaffold_198616 (213-14) | |
| 426-572, gnl|mm7|chr6 (126865713-126865864) | |
| 426-572, gnl|mm7|chr6 (126865905-126865692) | |
| 426-572, gnl|Mm7|chr6 (126865866-126865712) | |
| 426-572, gnl|monDom2|scaffold_1 (157132940-157132797) | |
| 426-572, gnl|monDom2|scaffold_31 (20949054-20948851) | |
| 426-572, gnl|oryCun1|scaffold_214747 (22641-22784) | |
| 426-572, gnl|oryCun1|scaffold_214747 (22812-22622) | |
| 426-572, gnl|panTro1|chr10 (4902329-4902532) | |
| 426-572, gnl|panTro1|chr23 (34738012-34738155) | |
| 426-572, gnl|rheMac2|chr10 (79825822-79825965) | |
| 426-572, gnl|rheMac2|chr11 (4763233-4763436) | |
| 426-572, gnl|rn3|chr4 (163474107-163474250) | |
| 426-572, gnl|rn3|chr4 (163474292-163474086) | |
| 426-572, gnl|tetNig1|chr13 (1601511-1601370) | |
| 426-572, gnl|tetNig1|chr13 (1601330-1601515) | |
| 426-572, gnl|xenTro1|scaffold_10 (1160959-1161138) | |
| 819-922, gnl|bosTau2|chr5 (63779619-63779722) | |
| 819-922, gnl|canFam2|chr27 (43217448-43217316) | |
| 819-922, gnl|echTel1|scaffold_285266 (72531-72399) | |
| 819-922, gnl|fr1|chrUn (243915849-243915728) | |
| 819-922, gnl|hg17|chr12 (4661612-4661745) | |
| 819-922, gnl|Hg17|chr12 (4661631-4661734) | |
| 819-922, gnl|loxAfr1|scaffold_109248 (8149-8283) | |
| 819-922, gnl|mm7|chr6 (126852707-126852577) | |
| 819-922, gnl|Mm7|chr6 (126852689-126852586) | |
| 819-922, gnl|monDom2|scaffold_31 (20938682-20938550) | |
| 819-922, gnl|oryCun1|scaffold_214747 (1385-1251) | |
| 819-922, gnl|panTro1|chr10 (4925642-4925775) | |
| 819-922, gnl|rheMac2|chr11 (4786986-4787111) | |
| 819-922, gnl|rn3|chr4 (163461895-163461765) | |
| 819-922, gnl|tetNig1|chr13 (1602387-1602505) | |
| 984-1263, gnl|bosTau2|chr5 (63784240-63784514) | |
| 984-1263, gnl|Hg17|chr12 (4666366-4666647) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 69-241, gnl|bosTau2|chr5 (63768833-63769005) | |
| 69-241, gnl|canFam2|chr27 (43240599-43240716) | |
| 69-241, gnl|danRer3|chrUn (9217441-9217558) | |
| 69-241, gnl|dasNov1|scaffold_43436 (7696-7579) | |
| 69-241, gnl|echTel1|scaffold_206777 (3060-3181) | |
| 69-241, gnl|fr1|chrUn (243917788-243917905) | |
| 69-241, gnl|Hg17|chr12 (4633719-4633891) | |
| 69-241, gnl|hg17|chr22 (34618732-34618850) | |
| 69-241, gnl|mm7|chr6 (126869847-126869964) | |
| 69-241, gnl|Mm7|chr6 (126870017-126869845) | |
| 69-241, gnl|monDom2|scaffold_1 (157132608-157132491) | |
| 69-241, gnl|oryCun1|scaffold_214747 (28434-28551) | |
| 69-241, gnl|panTro1|chr23 (34738344-34738462) | |
| 69-241, gnl|rheMac2|chr10 (79826154-79826267) | |
| 69-241, gnl|rn3|chr4 (163478394-163478511) | |
| 69-241, gnl|tetNig1|chr13 (1600773-1600656) | |
| 426-572, gnl|bosTau2|chr5 (63772960-63773106) | |
| 426-572, gnl|canFam2|chr27 (43235722-43235865) | |
| 426-572, gnl|canFam2|chr27 (43235902-43235719) | |
| 426-572, gnl|danRer3|chrUn (9217109-9217252) | |
| 426-572, gnl|danRer3|chrUn (177998855-177999046) | |
| 426-572, gnl|dasNov1|scaffold_64346 (8841-8982) | |
| 426-572, gnl|dasNov1|scaffold_64346 (9024-8816) | |
| 426-572, gnl|echTel1|scaffold_206777 (2742-2883) | |
| 426-572, gnl|echTel1|scaffold_285266 (87202-87002) | |
| 426-572, gnl|fr1|chrUn (243916803-243916944) | |
| 426-572, gnl|fr1|chrUn (243916969-243916800) | |
| 426-572, gnl|hg17|chr12 (4638426-4638629) | |
| 426-572, gnl|Hg17|chr12 (4638459-4638605) | |
| 426-572, gnl|hg17|chr22 (34618400-34618543) | |
| 426-572, gnl|loxAfr1|scaffold_198616 (36-179) | |
| 426-572, gnl|loxAfr1|scaffold_198616 (213-14) | |
| 426-572, gnl|mm7|chr6 (126865713-126865864) | |
| 426-572, gnl|mm7|chr6 (126865905-126865692) | |
| 426-572, gnl|Mm7|chr6 (126865866-126865712) | |
| 426-572, gnl|monDom2|scaffold_1 (157132940-157132797) | |
| 426-572, gnl|monDom2|scaffold_31 (20949054-20948851) | |
| 426-572, gnl|oryCun1|scaffold_214747 (22641-22784) | |
| 426-572, gnl|oryCun1|scaffold_214747 (22812-22622) | |
| 426-572, gnl|panTro1|chr10 (4902329-4902532) | |
| 426-572, gnl|panTro1|chr23 (34738012-34738155) | |
| 426-572, gnl|rheMac2|chr10 (79825822-79825965) | |
| 426-572, gnl|rheMac2|chr11 (4763233-4763436) | |
| 426-572, gnl|rn3|chr4 (163474107-163474250) | |
| 426-572, gnl|rn3|chr4 (163474292-163474086) | |
| 426-572, gnl|tetNig1|chr13 (1601511-1601370) | |
| 426-572, gnl|tetNig1|chr13 (1601330-1601515) | |
| 426-572, gnl|xenTro1|scaffold_10 (1160959-1161138) | |
| 819-922, gnl|bosTau2|chr5 (63779619-63779722) | |
| 819-922, gnl|canFam2|chr27 (43217448-43217316) | |
| 819-922, gnl|echTel1|scaffold_285266 (72531-72399) | |
| 819-922, gnl|fr1|chrUn (243915849-243915728) | |
| 819-922, gnl|hg17|chr12 (4661612-4661745) | |
| 819-922, gnl|Hg17|chr12 (4661631-4661734) | |
| 819-922, gnl|loxAfr1|scaffold_109248 (8149-8283) | |
| 819-922, gnl|mm7|chr6 (126852707-126852577) | |
| 819-922, gnl|Mm7|chr6 (126852689-126852586) | |
| 819-922, gnl|monDom2|scaffold_31 (20938682-20938550) | |
| 819-922, gnl|oryCun1|scaffold_214747 (1385-1251) | |
| 819-922, gnl|panTro1|chr10 (4925642-4925775) | |
| 819-922, gnl|rheMac2|chr11 (4786986-4787111) | |
| 819-922, gnl|rn3|chr4 (163461895-163461765) | |
| 819-922, gnl|tetNig1|chr13 (1602387-1602505) | |
| 984-1263, gnl|bosTau2|chr5 (63784240-63784514) | |
| 984-1263, gnl|Hg17|chr12 (4666366-4666647) |
| Expressed library(ies): 38 entry(ies) | More info |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
| hlv (0.835538) | |
| eep (0.490256) | |
| nms (0.427716) | |
| hea (0.408998) | |
| ssp (0.406559) | |
| cov (0.396458) | |
| elu (0.385356) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| cli (0.305623) | |
| ste (0.270416) | |
| sug (0.254582) | |
| jca (0.22792) | |
| mas (0.210305) | |
| tes (0.207814) | |
| ton (0.1755) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cje (0.165235) | |
| csp (0.161186) | |
| ctl (0.153069) | |
| lun (0.150489) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| tra (0.123092) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cbl (0.114797) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.835538) | |
| eep (0.490256) | |
| nms (0.427716) | |
| hea (0.408998) | |
| ssp (0.406559) | |
| cov (0.396458) | |
| elu (0.385356) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| cli (0.305623) | |
| ste (0.270416) | |
| sug (0.254582) | |
| jca (0.22792) | |
| mas (0.210305) | |
| tes (0.207814) | |
| ton (0.1755) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cje (0.165235) | |
| csp (0.161186) | |
| ctl (0.153069) | |
| lun (0.150489) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| tra (0.123092) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cbl (0.114797) | |
| jej (0.0989218) | |
| eje (0.0988338) |