Ss1.1-Tes1-TES01H020045.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTAGCCAGTCGGAGCGCGGCAGCCATGAGACCCGGGAACGCGAGCAATGGGTCTCATGTC AGAGCTGAAGCTCGCTGTGCCCTGGGGCCACATTGCCGCCAAAATCTGGGGCCCCCAGCA GGGCTCCCCAGTTCTCTGCCTTCACGGCTGGCTGGACAATGCTAACTCCTTCGACAGGCT CATCCCTCTTCTCCCGAAAGACTTTCACTACGTGGCCATGGATTTTGGGGGTCATGGGCT CTCGTCCCATTATAGCCCAGGTTTCCCGTATTACCACCAAAACTTTGTGACTGAGGTCCG AAGGGTCGTGGCAGCCCTGAAATGGAACCGTTTTTCCCTCCTGGGCCACAGTTTTGGTGG CACTGTGGGTGGAATGTTTTCCTGTATCTTCCCCGAGATGGTGGATAAACTTATCTTGCT GGACTCCTCACCATTTGTCCTGGACACTAATGAAGTAGAGAGCATGCTGAGCTACAAGCG GAGAGCCATAGAACACACGCTGCAGCTGGAGGCCTCCAACAAGCCGTCGAAAGTGGTCAG CCCGCAGGAGATGCTGCAGGGGCTGCTGAAGAACAACAGTCACGTGGGAGAGGAGTGTGG GGCGCTCCTCCTGCAGAGAGGAACCACGCCGGTGGCCGCAGGCCTGGTGATGAACAGAGA CCGGAGGATCTCTTGGCCGGAGCAGAGCTTCGAGTTCATCAGCAGGGAGCTGTTTGTACA CGCCATCAAGCAGCTGCAGGCCCGCGTCCTGCTCATCAAAGCAGCGCAAGGATTTTATAA CGTGAGGAGGGAGAACGACGCTGACAAGGAGCCCATGCAGTTCGTGACCAGCACACTGAG ATCTATTCTCCAAGAGCGGTTCCAGTACGTGGAAGTCCCAGGCAATCACTACGTGCATCT GAACCAGCCCCAGCACGTGGCCGGTGTCATCAGCTCCTTTTTACAGAGCAAGGCGATCCC CGCCCAGCTGTAGCCATGGCCTGCGGCTGAAGACCTGCCGCTTGGCACCGGACTCCCAGC TGGCAAGCCCAGGCCAGGCGTGGTCAGCGGAGGATCCTGCAGCAGTTGAGGGGGCGGGGG TGGGGTAAAGGGAACAGGACAAGATTCTGACCTTAACATCTGACCTCAAGACAGTGTCTG GATCGGGGGCATTATCTGTTCAGTGAGTGGGTGGGGGGGGTCAGACCCACCAACTTTTGT AGCCTTTTCTTGGTGCCCAACTGGATGAAAAATACAATGTTCCCTTATCCTCGCTGCTTC CAAGGCTGTTCCACTGCCAGCAGGGGCTTCTCGACGGGGGGAGGGGGCGACAGAGCAGAC ACAGCCCTGAGGAGAGCCCAGAGGCAGGCTGGGGACGAGCCCAGGGGAGGGAAGGCGCCA CCTCCGGGCCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTAGCCAGTCGGAGCGCGGCAGCCATGAGACCCGGGAACGCGAGCAATGGGTCTCATGTC AGAGCTGAAGCTCGCTGTGCCCTGGGGCCACATTGCCGCCAAAATCTGGGGCCCCCAGCA GGGCTCCCCAGTTCTCTGCCTTCACGGCTGGCTGGACAATGCTAACTCCTTCGACAGGCT CATCCCTCTTCTCCCGAAAGACTTTCACTACGTGGCCATGGATTTTGGGGGTCATGGGCT CTCGTCCCATTATAGCCCAGGTTTCCCGTATTACCACCAAAACTTTGTGACTGAGGTCCG AAGGGTCGTGGCAGCCCTGAAATGGAACCGTTTTTCCCTCCTGGGCCACAGTTTTGGTGG CACTGTGGGTGGAATGTTTTCCTGTATCTTCCCCGAGATGGTGGATAAACTTATCTTGCT GGACTCCTCACCATTTGTCCTGGACACTAATGAAGTAGAGAGCATGCTGAGCTACAAGCG GAGAGCCATAGAACACACGCTGCAGCTGGAGGCCTCCAACAAGCCGTCGAAAGTGGTCAG CCCGCAGGAGATGCTGCAGGGGCTGCTGAAGAACAACAGTCACGTGGGAGAGGAGTGTGG GGCGCTCCTCCTGCAGAGAGGAACCACGCCGGTGGCCGCAGGCCTGGTGATGAACAGAGA CCGGAGGATCTCTTGGCCGGAGCAGAGCTTCGAGTTCATCAGCAGGGAGCTGTTTGTACA CGCCATCAAGCAGCTGCAGGCCCGCGTCCTGCTCATCAAAGCAGCGCAAGGATTTTATAA CGTGAGGAGGGAGAACGACGCTGACAAGGAGCCCATGCAGTTCGTGACCAGCACACTGAG ATCTATTCTCCAAGAGCGGTTCCAGTACGTGGAAGTCCCAGGCAATCACTACGTGCATCT GAACCAGCCCCAGCACGTGGCCGGTGTCATCAGCTCCTTTTTACAGAGCAAGGCGATCCC CGCCCAGCTGTAGCCATGGCCTGCGGCTGAAGACCTGCCGCTTGGCACCGGACTCCCAGC TGGCAAGCCCAGGCCAGGCGTGGTCAGCGGAGGATCCTGCAGCAGTTGAGGGGGCGGGGG TGGGGTAAAGGGAACAGGACAAGATTCTGACCTTAACATCTGACCTCAAGACAGTGTCTG GATCGGGGGCATTATCTGTTCAGTGAGTGGGTGGGGGGGGTCAGACCCACCAACTTTTGT AGCCTTTTCTTGGTGCCCAACTGGATGAAAAATACAATGTTCCCTTATCCTCGCTGCTTC CAAGGCTGTTCCACTGCCAGCAGGGGCTTCTCGACGGGGGGAGGGGGCGACAGAGCAGAC ACAGCCCTGAGGAGAGCCCAGAGGCAGGCTGGGGACGAGCCCAGGGGAGGGAAGGCGCCA CCTCCGGGCCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 50-200, - strand, RNAz p=0.523065 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 50-200, - strand, RNAz p=0.523065 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 50-200, gnl|bosTau2|chr5 (71353941-71354091) | |
| 50-200, gnl|canFam2|chr10 (25991124-25990948) | |
| 50-200, gnl|echTel1|scaffold_258172 (150-325) | |
| 50-200, gnl|fr1|chrUn (91881664-91881480) | |
| 50-200, gnl|galGal2|chr1 (45939390-45939200) | |
| 50-200, gnl|hg17|chr22 (41222103-41222298) | |
| 50-200, gnl|Hg17|chr22 (41275441-41275591) | |
| 50-200, gnl|mm7|chr15 (83186016-83186209) | |
| 50-200, gnl|Mm7|chr15 (83186040-83186190) | |
| 50-200, gnl|oryCun1|scaffold_103769 (8124-7954) | |
| 50-200, gnl|panTro1|chr23 (41482398-41482591) | |
| 50-200, gnl|rheMac2|chr10 (86471199-86471394) | |
| 50-200, gnl|rn3|chr7 (121162338-121162531) | |
| 50-200, gnl|tetNig1|chr18 (3543842-3543691) | |
| 50-200, gnl|xenTro1|scaffold_44 (58023-57826) | |
| 441-562, gnl|bosTau2|chr5 (71357212-71357333) | |
| 441-562, gnl|canFam2|chr10 (25987794-25987454) | |
| 441-562, gnl|echTel1|scaffold_258172 (3858-4130) | |
| 441-562, gnl|hg17|chr22 (41225488-41225783) | |
| 441-562, gnl|Hg17|chr22 (41278841-41278962) | |
| 441-562, gnl|mm7|chr15 (83188661-83189028) | |
| 441-562, gnl|Mm7|chr15 (83188695-83188819) | |
| 441-562, gnl|oryCun1|scaffold_103769 (5599-5341) | |
| 441-562, gnl|panTro1|chr23 (41485771-41486067) | |
| 441-562, gnl|rheMac2|chr10 (86474582-86474877) | |
| 441-562, gnl|rn3|chr7 (121165016-121165379) | |
| 855-1042, gnl|bosTau2|chr5 (71372645-71372835) | |
| 855-1042, gnl|Hg17|chr22 (41294438-41294647) | |
| 855-1042, gnl|Mm7|chr15 (83200652-83200843) | |
| 1076-1390, gnl|bosTau2|chr5 (71372899-71373222) | |
| 1076-1390, gnl|Hg17|chr22 (41294684-41295012) | |
| 1076-1390, gnl|Mm7|chr15 (83200901-83201185) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 50-200, gnl|bosTau2|chr5 (71353941-71354091) | |
| 50-200, gnl|canFam2|chr10 (25991124-25990948) | |
| 50-200, gnl|echTel1|scaffold_258172 (150-325) | |
| 50-200, gnl|fr1|chrUn (91881664-91881480) | |
| 50-200, gnl|galGal2|chr1 (45939390-45939200) | |
| 50-200, gnl|hg17|chr22 (41222103-41222298) | |
| 50-200, gnl|Hg17|chr22 (41275441-41275591) | |
| 50-200, gnl|mm7|chr15 (83186016-83186209) | |
| 50-200, gnl|Mm7|chr15 (83186040-83186190) | |
| 50-200, gnl|oryCun1|scaffold_103769 (8124-7954) | |
| 50-200, gnl|panTro1|chr23 (41482398-41482591) | |
| 50-200, gnl|rheMac2|chr10 (86471199-86471394) | |
| 50-200, gnl|rn3|chr7 (121162338-121162531) | |
| 50-200, gnl|tetNig1|chr18 (3543842-3543691) | |
| 50-200, gnl|xenTro1|scaffold_44 (58023-57826) | |
| 441-562, gnl|bosTau2|chr5 (71357212-71357333) | |
| 441-562, gnl|canFam2|chr10 (25987794-25987454) | |
| 441-562, gnl|echTel1|scaffold_258172 (3858-4130) | |
| 441-562, gnl|hg17|chr22 (41225488-41225783) | |
| 441-562, gnl|Hg17|chr22 (41278841-41278962) | |
| 441-562, gnl|mm7|chr15 (83188661-83189028) | |
| 441-562, gnl|Mm7|chr15 (83188695-83188819) | |
| 441-562, gnl|oryCun1|scaffold_103769 (5599-5341) | |
| 441-562, gnl|panTro1|chr23 (41485771-41486067) | |
| 441-562, gnl|rheMac2|chr10 (86474582-86474877) | |
| 441-562, gnl|rn3|chr7 (121165016-121165379) | |
| 855-1042, gnl|bosTau2|chr5 (71372645-71372835) | |
| 855-1042, gnl|Hg17|chr22 (41294438-41294647) | |
| 855-1042, gnl|Mm7|chr15 (83200652-83200843) | |
| 1076-1390, gnl|bosTau2|chr5 (71372899-71373222) | |
| 1076-1390, gnl|Hg17|chr22 (41294684-41295012) | |
| 1076-1390, gnl|Mm7|chr15 (83200901-83201185) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| nlu (0.383362) | |
| cki (0.330469) | |
| jej (0.296765) | |
| ecc (0.23007) | |
| fli (0.202881) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.383362) | |
| cki (0.330469) | |
| jej (0.296765) | |
| ecc (0.23007) | |
| fli (0.202881) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) |