Ss1.1-Tes1-TES01H020056.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGACCACCCGAAAGAACCACGGGCCGCGCCTGGGGCTGCTGCTGCGCACCTGGATCTCC CGGGCCCGACAGCAGACATTCATCTTTACTGATGGGGACGACCCCGAGTTGCAGCTCCAG GGTGGCAGCCACGTTGTCAACACCAACTGCTCAGCCGTGCACACCCGCCAGGCTCTGTGC TGCAAGATGGCAGTGGAATATGACAAGTTCATCGAGTCTGGACGCAAGTGGTTCTGCCAC GTGGATGACGACAACTACGTGAACCCCGATGGCCTGCTGCACCTGCTGTCCAGCTTCTCG CCCAGCCAAGACGTCTACCTGGGGCGGCCCAGCCTGGACCACCCCATCGAGGCTACCGAG AGGGTCCAGGGAGGTGGAACCGTGACCTCGGTCAAGTTCTGGTTCGCTACTGGGGGGGCC GGGTTCTGCCTGAGCAGAGGCCTTGCCCTCAAGATGAGCCCCTGGGCCAGCCTGGGCAGC TTCATGAGCACAGCTGAGCGGGTGCGGCTGCCAGACGACTGCACCGTGGGCTACATCGTG GAGGGGCTGCTGGGCGCGCGCCTGTTGCGCAGCCCCCTCTTCCACTCCCACCTGGAGAAC CTCCCGAGGCTGCCGCCCGACACCCTGCTCCAGCAGGTCACTTTGAGCTATGGGGGCCCT GAGAACCCGCACAACGTGGTGAACGTGGCCGGGGGCTTCAGCCTGCAGCAGGATCCCACG CGGTTTCAGTCCGTCCACTGCCTCCTCTATCCGGACACGGACTGGTGTCCCGGGCAGAAG CAGAGCGACCTCGCCCCGCGGTGACCCTCAGCCCCTGGCCCAGAGGCGGCTCCGGCTCTG CCCCGCGGTGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGACCACCCGAAAGAACCACGGGCCGCGCCTGGGGCTGCTGCTGCGCACCTGGATCTCC CGGGCCCGACAGCAGACATTCATCTTTACTGATGGGGACGACCCCGAGTTGCAGCTCCAG GGTGGCAGCCACGTTGTCAACACCAACTGCTCAGCCGTGCACACCCGCCAGGCTCTGTGC TGCAAGATGGCAGTGGAATATGACAAGTTCATCGAGTCTGGACGCAAGTGGTTCTGCCAC GTGGATGACGACAACTACGTGAACCCCGATGGCCTGCTGCACCTGCTGTCCAGCTTCTCG CCCAGCCAAGACGTCTACCTGGGGCGGCCCAGCCTGGACCACCCCATCGAGGCTACCGAG AGGGTCCAGGGAGGTGGAACCGTGACCTCGGTCAAGTTCTGGTTCGCTACTGGGGGGGCC GGGTTCTGCCTGAGCAGAGGCCTTGCCCTCAAGATGAGCCCCTGGGCCAGCCTGGGCAGC TTCATGAGCACAGCTGAGCGGGTGCGGCTGCCAGACGACTGCACCGTGGGCTACATCGTG GAGGGGCTGCTGGGCGCGCGCCTGTTGCGCAGCCCCCTCTTCCACTCCCACCTGGAGAAC CTCCCGAGGCTGCCGCCCGACACCCTGCTCCAGCAGGTCACTTTGAGCTATGGGGGCCCT GAGAACCCGCACAACGTGGTGAACGTGGCCGGGGGCTTCAGCCTGCAGCAGGATCCCACG CGGTTTCAGTCCGTCCACTGCCTCCTCTATCCGGACACGGACTGGTGTCCCGGGCAGAAG CAGAGCGACCTCGCCCCGCGGTGACCCTCAGCCCCTGGCCCAGAGGCGGCTCCGGCTCTG CCCCGCGGTGCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 225-384, gnl|bosTau2|chr19 (45603177-45603018) | |
| 225-384, gnl|canFam2|chr9 (3268684-3268516) | |
| 225-384, gnl|danRer3|chr19 (63529334-63529173) | |
| 225-384, gnl|dasNov1|scaffold_69638 (3692-3831) | |
| 225-384, gnl|echTel1|scaffold_59384 (911-1082) | |
| 225-384, gnl|fr1|chrUn (22599608-22599774) | |
| 225-384, gnl|galGal2|chr14 (5388529-5388331) | |
| 225-384, gnl|hg17|chr17 (77601560-77601728) | |
| 225-384, gnl|Hg17|chr17 (77601723-77601564) | |
| 225-384, gnl|loxAfr1|scaffold_71876 (3503-3357) | |
| 225-384, gnl|mm7|chr11 (120892045-120892213) | |
| 225-384, gnl|Mm7|chr11 (120892207-120892049) | |
| 225-384, gnl|monDom2|scaffold_18 (15553136-15553305) | |
| 225-384, gnl|oryCun1|scaffold_137302 (566-402) | |
| 225-384, gnl|panTro1|chr19 (81365779-81365947) | |
| 225-384, gnl|rheMac2|chr16 (77515981-77516149) | |
| 225-384, gnl|rn3|chr12 (14530377-14530550) | |
| 225-384, gnl|tetNig1|chrUn_random (91582075-91582241) | |
| 225-384, gnl|xenTro1|scaffold_2821 (18484-18619) | |
| 467-638, gnl|bosTau2|chr19 (45602542-45602371) | |
| 467-638, gnl|canFam2|chr9 (3269145-3268961) | |
| 467-638, gnl|danRer3|chr19 (63532441-63532265) | |
| 467-638, gnl|dasNov1|scaffold_18426 (7988-7852) | |
| 467-638, gnl|echTel1|scaffold_59384 (279-467) | |
| 467-638, gnl|fr1|chrUn (22599179-22599355) | |
| 467-638, gnl|galGal2|chr18 (4783023-4782841) | |
| 467-638, gnl|hg17|chr17 (77600839-77601015) | |
| 467-638, gnl|Hg17|chr17 (77601011-77600840) | |
| 467-638, gnl|loxAfr1|scaffold_71876 (4073-3892) | |
| 467-638, gnl|mm7|chr11 (120891425-120891602) | |
| 467-638, gnl|Mm7|chr11 (120891597-120891426) | |
| 467-638, gnl|monDom2|scaffold_18 (15551884-15552068) | |
| 467-638, gnl|oryCun1|scaffold_137302 (1163-987) | |
| 467-638, gnl|panTro1|chr19 (81365058-81365234) | |
| 467-638, gnl|rheMac2|chr16 (77515270-77515446) | |
| 467-638, gnl|rn3|chr12 (14529677-14529864) | |
| 467-638, gnl|tetNig1|chrUn_random (91581535-91581708) | |
| 467-638, gnl|xenTro1|scaffold_413 (842347-842530) | |
| 714-815, gnl|bosTau2|chr19 (45601659-45601557) | |
| 714-815, gnl|Hg17|chr17 (77600017-77599872) | |
| 714-815, gnl|Mm7|chr11 (120890956-120890856) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 225-384, gnl|bosTau2|chr19 (45603177-45603018) | |
| 225-384, gnl|canFam2|chr9 (3268684-3268516) | |
| 225-384, gnl|danRer3|chr19 (63529334-63529173) | |
| 225-384, gnl|dasNov1|scaffold_69638 (3692-3831) | |
| 225-384, gnl|echTel1|scaffold_59384 (911-1082) | |
| 225-384, gnl|fr1|chrUn (22599608-22599774) | |
| 225-384, gnl|galGal2|chr14 (5388529-5388331) | |
| 225-384, gnl|hg17|chr17 (77601560-77601728) | |
| 225-384, gnl|Hg17|chr17 (77601723-77601564) | |
| 225-384, gnl|loxAfr1|scaffold_71876 (3503-3357) | |
| 225-384, gnl|mm7|chr11 (120892045-120892213) | |
| 225-384, gnl|Mm7|chr11 (120892207-120892049) | |
| 225-384, gnl|monDom2|scaffold_18 (15553136-15553305) | |
| 225-384, gnl|oryCun1|scaffold_137302 (566-402) | |
| 225-384, gnl|panTro1|chr19 (81365779-81365947) | |
| 225-384, gnl|rheMac2|chr16 (77515981-77516149) | |
| 225-384, gnl|rn3|chr12 (14530377-14530550) | |
| 225-384, gnl|tetNig1|chrUn_random (91582075-91582241) | |
| 225-384, gnl|xenTro1|scaffold_2821 (18484-18619) | |
| 467-638, gnl|bosTau2|chr19 (45602542-45602371) | |
| 467-638, gnl|canFam2|chr9 (3269145-3268961) | |
| 467-638, gnl|danRer3|chr19 (63532441-63532265) | |
| 467-638, gnl|dasNov1|scaffold_18426 (7988-7852) | |
| 467-638, gnl|echTel1|scaffold_59384 (279-467) | |
| 467-638, gnl|fr1|chrUn (22599179-22599355) | |
| 467-638, gnl|galGal2|chr18 (4783023-4782841) | |
| 467-638, gnl|hg17|chr17 (77600839-77601015) | |
| 467-638, gnl|Hg17|chr17 (77601011-77600840) | |
| 467-638, gnl|loxAfr1|scaffold_71876 (4073-3892) | |
| 467-638, gnl|mm7|chr11 (120891425-120891602) | |
| 467-638, gnl|Mm7|chr11 (120891597-120891426) | |
| 467-638, gnl|monDom2|scaffold_18 (15551884-15552068) | |
| 467-638, gnl|oryCun1|scaffold_137302 (1163-987) | |
| 467-638, gnl|panTro1|chr19 (81365058-81365234) | |
| 467-638, gnl|rheMac2|chr16 (77515270-77515446) | |
| 467-638, gnl|rn3|chr12 (14529677-14529864) | |
| 467-638, gnl|tetNig1|chrUn_random (91581535-91581708) | |
| 467-638, gnl|xenTro1|scaffold_413 (842347-842530) | |
| 714-815, gnl|bosTau2|chr19 (45601659-45601557) | |
| 714-815, gnl|Hg17|chr17 (77600017-77599872) | |
| 714-815, gnl|Mm7|chr11 (120890956-120890856) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.957167) | |
| cty (0.20816) | |
| ctl (0.153069) |