Ss1.1-Tes1-TES01H030003.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAACATGGCGGCGCCCAGGGATGCTGAGGACGCCGGCGGCCGGTGAGAAGCTGCGTGTGT CCCGAGTGCGCGGCGAGGTCGCTACGTCCCGTGTGTCCTGCCCTCAGATCTTGCGCGGTC GTCCTCCCAGGTCCCCGCGCGATGTGGAGGACCTGCCTCCGGCTGCGGGACGGGGGACGC CGCCTCCTGAACCGGCCCCGGGGTGGCCTCATCGCCTCCGAGGGGCGGGGGCCCAGTCCC CCGACCCCCGCCCGGGCGTACGCGCCCCCGGCAGAGAGAAAGCGGTTTTATCAGAATGTC AGCATCACACAAGGGGAAGGTGGCTTTGAGATCAACCTGGACCACAGGAAGCTGAAGACG CCCCAGGCCAAGCTCTTCACCGTCCCCAGCGAGGCCCTGGCTGTCGCGGTGGCCACGGAG TGGGACTCCCAGCAGGACACCATCAAGCCCTACACCATGCACCTGACCACGCTGTGCAAC ACCTCCCTGGACAACCCGACCCAGCGAGACAAGGGCCAGCTGATCCGGGCGGCACTCAAG TTCCTGGACACCGACACCGTCTGCTACAGGGTGGAAGAGCCGGAGACGCTGGTGGAGCTG CAGAGGAACGAGTGGGACCCGGTGATCGCCTGGGCCGAGAGGAGGTACGGCGTGGAGATC AGCTCCTCCACCAGCATCCTGGGGCCCAGCATCCCCGCCCGGACTCGAGAGGCACTGGTC AGCCACCTGGCGTCTTATAACATGTGGGCCCTACAAGGGATCGAGTTTGTGGTGACCCAG CTCAAGTCCATGGTGCTGACCTTGGGCCTGATCGACCTGTACCTGACGGTGGAGCGGGCC GTGCTGCTGTCGCGCCTGGAGGAGGAGTACCAGATGCAGAAGTGGGGCAGCATCGAGTGG GCCCACGACTATGAGCTGCGGGAGCTGCGGGCGCGCACGGCCGCGGGCGCCCTCTTCGTC CACCTCTGCTCCGAGAGCACGACGGTCAAGCACAAGCTCCTGCAGGGGTGAGGCTGCGAG CTCGAGAGACTCCTGTCCTTACACGTCAGTCCCCTGGAAGTGCTGGGGCCCAGAGTCCGC GCCCCTCGTCCCGCCTCCCCGCAGGGCTCACTGCGCAGCCCTCAGCCCCAAGGCTTTTCT TTTTTCTTGGTTTTTAATCAAACGATCTTTCCAACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAACATGGCGGCGCCCAGGGATGCTGAGGACGCCGGCGGCCGGTGAGAAGCTGCGTGTGT CCCGAGTGCGCGGCGAGGTCGCTACGTCCCGTGTGTCCTGCCCTCAGATCTTGCGCGGTC GTCCTCCCAGGTCCCCGCGCGATGTGGAGGACCTGCCTCCGGCTGCGGGACGGGGGACGC CGCCTCCTGAACCGGCCCCGGGGTGGCCTCATCGCCTCCGAGGGGCGGGGGCCCAGTCCC CCGACCCCCGCCCGGGCGTACGCGCCCCCGGCAGAGAGAAAGCGGTTTTATCAGAATGTC AGCATCACACAAGGGGAAGGTGGCTTTGAGATCAACCTGGACCACAGGAAGCTGAAGACG CCCCAGGCCAAGCTCTTCACCGTCCCCAGCGAGGCCCTGGCTGTCGCGGTGGCCACGGAG TGGGACTCCCAGCAGGACACCATCAAGCCCTACACCATGCACCTGACCACGCTGTGCAAC ACCTCCCTGGACAACCCGACCCAGCGAGACAAGGGCCAGCTGATCCGGGCGGCACTCAAG TTCCTGGACACCGACACCGTCTGCTACAGGGTGGAAGAGCCGGAGACGCTGGTGGAGCTG CAGAGGAACGAGTGGGACCCGGTGATCGCCTGGGCCGAGAGGAGGTACGGCGTGGAGATC AGCTCCTCCACCAGCATCCTGGGGCCCAGCATCCCCGCCCGGACTCGAGAGGCACTGGTC AGCCACCTGGCGTCTTATAACATGTGGGCCCTACAAGGGATCGAGTTTGTGGTGACCCAG CTCAAGTCCATGGTGCTGACCTTGGGCCTGATCGACCTGTACCTGACGGTGGAGCGGGCC GTGCTGCTGTCGCGCCTGGAGGAGGAGTACCAGATGCAGAAGTGGGGCAGCATCGAGTGG GCCCACGACTATGAGCTGCGGGAGCTGCGGGCGCGCACGGCCGCGGGCGCCCTCTTCGTC CACCTCTGCTCCGAGAGCACGACGGTCAAGCACAAGCTCCTGCAGGGGTGAGGCTGCGAG CTCGAGAGACTCCTGTCCTTACACGTCAGTCCCCTGGAAGTGCTGGGGCCCAGAGTCCGC GCCCCTCGTCCCGCCTCCCCGCAGGGCTCACTGCGCAGCCCTCAGCCCCAAGGCTTTTCT TTTTTCTTGGTTTTTAATCAAACGATCTTTCCAACG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-274, gnl|bosTau2|chr19 (24500400-24500125) | |
| 1-274, gnl|Hg17|chr17 (17883202-17882920) | |
| 1-274, gnl|Mm7|chr11 (60498587-60498309) | |
| 317-465, gnl|bosTau2|chr19 (24494635-24494487) | |
| 317-465, gnl|canFam2|chr5 (44489253-44489068) | |
| 317-465, gnl|danRer3|chr12 (13152092-13152282) | |
| 317-465, gnl|dasNov1|scaffold_219239 (1636-1821) | |
| 317-465, gnl|echTel1|scaffold_18969 (2328-2513) | |
| 317-465, gnl|fr1|chrUn (64895890-64896053) | |
| 317-465, gnl|galGal2|chr14 (7058268-7058449) | |
| 317-465, gnl|hg17|chr17 (17872265-17872450) | |
| 317-465, gnl|Hg17|chr17 (17872419-17872271) | |
| 317-465, gnl|loxAfr1|scaffold_20140 (43044-43229) | |
| 317-465, gnl|mm7|chr11 (60490812-60490996) | |
| 317-465, gnl|Mm7|chr11 (60490966-60490818) | |
| 317-465, gnl|monDom2|scaffold_55 (12551433-12551249) | |
| 317-465, gnl|oryCun1|scaffold_202213 (42921-43106) | |
| 317-465, gnl|panTro1|chr19 (18280324-18280509) | |
| 317-465, gnl|rheMac2|chr16 (17944877-17945062) | |
| 317-465, gnl|rn3|chr10 (46689978-46690162) | |
| 317-465, gnl|tetNig1|chr2 (3671581-3671397) | |
| 317-465, gnl|xenTro1|scaffold_142 (458215-458057) | |
| 643-758, gnl|bosTau2|chr19 (24490567-24490452) | |
| 643-758, gnl|Hg17|chr17 (17865898-17865783) | |
| 643-758, gnl|Mm7|chr11 (60486052-60485937) | |
| 871-1011, gnl|bosTau2|chr19 (24489240-24489100) | |
| 871-1011, gnl|canFam2|chr5 (44497754-44497598) | |
| 871-1011, gnl|danRer3|chr12 (13149252-13149394) | |
| 871-1011, gnl|dasNov1|scaffold_48212 (566-410) | |
| 871-1011, gnl|echTel1|scaffold_301438 (138199-138077) | |
| 871-1011, gnl|fr1|chrUn (64894178-64894332) | |
| 871-1011, gnl|galGal2|chr14 (7055310-7055466) | |
| 871-1011, gnl|hg17|chr17 (17862589-17862745) | |
| 871-1011, gnl|Hg17|chr17 (17862728-17862588) | |
| 871-1011, gnl|loxAfr1|scaffold_20140 (35352-35508) | |
| 871-1011, gnl|mm7|chr11 (60482960-60483116) | |
| 871-1011, gnl|Mm7|chr11 (60483099-60482959) | |
| 871-1011, gnl|monDom2|scaffold_55 (12559789-12559645) | |
| 871-1011, gnl|oryCun1|scaffold_80607 (11401-11245) | |
| 871-1011, gnl|panTro1|chr19 (18270693-18270849) | |
| 871-1011, gnl|rheMac2|chr16 (17934380-17934536) | |
| 871-1011, gnl|rn3|chr10 (46683006-46683162) | |
| 871-1011, gnl|tetNig1|chr2 (3673121-3672967) | |
| 871-1011, gnl|xenTro1|scaffold_142 (461606-461454) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-274, gnl|bosTau2|chr19 (24500400-24500125) | |
| 1-274, gnl|Hg17|chr17 (17883202-17882920) | |
| 1-274, gnl|Mm7|chr11 (60498587-60498309) | |
| 317-465, gnl|bosTau2|chr19 (24494635-24494487) | |
| 317-465, gnl|canFam2|chr5 (44489253-44489068) | |
| 317-465, gnl|danRer3|chr12 (13152092-13152282) | |
| 317-465, gnl|dasNov1|scaffold_219239 (1636-1821) | |
| 317-465, gnl|echTel1|scaffold_18969 (2328-2513) | |
| 317-465, gnl|fr1|chrUn (64895890-64896053) | |
| 317-465, gnl|galGal2|chr14 (7058268-7058449) | |
| 317-465, gnl|hg17|chr17 (17872265-17872450) | |
| 317-465, gnl|Hg17|chr17 (17872419-17872271) | |
| 317-465, gnl|loxAfr1|scaffold_20140 (43044-43229) | |
| 317-465, gnl|mm7|chr11 (60490812-60490996) | |
| 317-465, gnl|Mm7|chr11 (60490966-60490818) | |
| 317-465, gnl|monDom2|scaffold_55 (12551433-12551249) | |
| 317-465, gnl|oryCun1|scaffold_202213 (42921-43106) | |
| 317-465, gnl|panTro1|chr19 (18280324-18280509) | |
| 317-465, gnl|rheMac2|chr16 (17944877-17945062) | |
| 317-465, gnl|rn3|chr10 (46689978-46690162) | |
| 317-465, gnl|tetNig1|chr2 (3671581-3671397) | |
| 317-465, gnl|xenTro1|scaffold_142 (458215-458057) | |
| 643-758, gnl|bosTau2|chr19 (24490567-24490452) | |
| 643-758, gnl|Hg17|chr17 (17865898-17865783) | |
| 643-758, gnl|Mm7|chr11 (60486052-60485937) | |
| 871-1011, gnl|bosTau2|chr19 (24489240-24489100) | |
| 871-1011, gnl|canFam2|chr5 (44497754-44497598) | |
| 871-1011, gnl|danRer3|chr12 (13149252-13149394) | |
| 871-1011, gnl|dasNov1|scaffold_48212 (566-410) | |
| 871-1011, gnl|echTel1|scaffold_301438 (138199-138077) | |
| 871-1011, gnl|fr1|chrUn (64894178-64894332) | |
| 871-1011, gnl|galGal2|chr14 (7055310-7055466) | |
| 871-1011, gnl|hg17|chr17 (17862589-17862745) | |
| 871-1011, gnl|Hg17|chr17 (17862728-17862588) | |
| 871-1011, gnl|loxAfr1|scaffold_20140 (35352-35508) | |
| 871-1011, gnl|mm7|chr11 (60482960-60483116) | |
| 871-1011, gnl|Mm7|chr11 (60483099-60482959) | |
| 871-1011, gnl|monDom2|scaffold_55 (12559789-12559645) | |
| 871-1011, gnl|oryCun1|scaffold_80607 (11401-11245) | |
| 871-1011, gnl|panTro1|chr19 (18270693-18270849) | |
| 871-1011, gnl|rheMac2|chr16 (17934380-17934536) | |
| 871-1011, gnl|rn3|chr10 (46683006-46683162) | |
| 871-1011, gnl|tetNig1|chr2 (3673121-3672967) | |
| 871-1011, gnl|xenTro1|scaffold_142 (461606-461454) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| fcc (0.197785) | |
| ton (0.1755) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| jej (0.0989218) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| ton (0.1755) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| jej (0.0989218) |